[INFO] fetching crate segul 0.8.6...
[INFO] testing segul-0.8.6 against master#a77da2d454e6caa227a85b16410b95f93495e7e0 for pr-91031
[INFO] extracting crate segul 0.8.6 into /workspace/builds/worker-6/source
[INFO] validating manifest of crates.io crate segul 0.8.6 on toolchain a77da2d454e6caa227a85b16410b95f93495e7e0
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a77da2d454e6caa227a85b16410b95f93495e7e0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate segul 0.8.6
[INFO] finished tweaking crates.io crate segul 0.8.6
[INFO] tweaked toml for crates.io crate segul 0.8.6 written to /workspace/builds/worker-6/source/Cargo.toml
[INFO] crate crates.io crate segul 0.8.6 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a77da2d454e6caa227a85b16410b95f93495e7e0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+a77da2d454e6caa227a85b16410b95f93495e7e0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] ddf1c9be9d6de05126236ae98524f8e91d33124be0c9f3aaafaa00f87f0f37a1
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "ddf1c9be9d6de05126236ae98524f8e91d33124be0c9f3aaafaa00f87f0f37a1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "ddf1c9be9d6de05126236ae98524f8e91d33124be0c9f3aaafaa00f87f0f37a1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "ddf1c9be9d6de05126236ae98524f8e91d33124be0c9f3aaafaa00f87f0f37a1", kill_on_drop: false }`
[INFO] [stdout] ddf1c9be9d6de05126236ae98524f8e91d33124be0c9f3aaafaa00f87f0f37a1
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+a77da2d454e6caa227a85b16410b95f93495e7e0" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 71bf8e6bfa882b591731124586038d0bcc49230fe6a6b92a2c339d9b584de3a2
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "71bf8e6bfa882b591731124586038d0bcc49230fe6a6b92a2c339d9b584de3a2", kill_on_drop: false }`
[INFO] [stderr]    Compiling autocfg v1.0.1
[INFO] [stderr]    Compiling unicode-xid v0.2.2
[INFO] [stderr]    Compiling syn v1.0.74
[INFO] [stderr]    Compiling lazy_static v1.4.0
[INFO] [stderr]    Compiling ryu v1.0.5
[INFO] [stderr]    Compiling ppv-lite86 v0.2.10
[INFO] [stderr]    Compiling traitobject v0.1.0
[INFO] [stderr]    Compiling serde_json v1.0.66
[INFO] [stderr]    Compiling anyhow v1.0.42
[INFO] [stderr]    Compiling smallvec v1.6.1
[INFO] [stderr]    Compiling lexical-core v0.7.6
[INFO] [stderr]    Compiling log v0.4.14
[INFO] [stderr]    Compiling arrayvec v0.4.12
[INFO] [stderr]    Compiling itoa v0.4.7
[INFO] [stderr]    Compiling nodrop v0.1.14
[INFO] [stderr]    Compiling dtoa v0.4.8
[INFO] [stderr]    Compiling hashbrown v0.9.1
[INFO] [stderr]    Compiling number_prefix v0.4.0
[INFO] [stderr]    Compiling zeroize v1.4.1
[INFO] [stderr]    Compiling fnv v1.0.7
[INFO] [stderr]    Compiling arc-swap v0.4.8
[INFO] [stderr]    Compiling log-mdc v0.1.0
[INFO] [stderr]    Compiling ansi_term v0.12.1
[INFO] [stderr]    Compiling bytecount v0.6.2
[INFO] [stderr]    Compiling alphanumeric-sort v1.4.3
[INFO] [stderr]    Compiling instant v0.1.10
[INFO] [stderr]    Compiling ahash v0.7.4
[INFO] [stderr]    Compiling nom v6.2.1
[INFO] [stderr]    Compiling lock_api v0.4.4
[INFO] [stderr]    Compiling unsafe-any v0.4.2
[INFO] [stderr]    Compiling proc-macro2 v1.0.28
[INFO] [stderr]    Compiling crossbeam-utils v0.8.5
[INFO] [stderr]    Compiling getrandom v0.2.3
[INFO] [stderr]    Compiling terminal_size v0.1.17
[INFO] [stderr]    Compiling parking_lot_core v0.8.3
[INFO] [stderr]    Compiling time v0.1.43
[INFO] [stderr]    Compiling thread-id v3.3.0
[INFO] [stderr]    Compiling typemap v0.3.3
[INFO] [stderr]    Compiling clap v2.33.3
[INFO] [stderr]    Compiling regex v1.4.6
[INFO] [stderr]    Compiling rand_core v0.6.3
[INFO] [stderr]    Compiling crossbeam-channel v0.5.1
[INFO] [stderr]    Compiling num-traits v0.2.14
[INFO] [stderr]    Compiling memoffset v0.6.4
[INFO] [stderr]    Compiling num-integer v0.1.44
[INFO] [stderr]    Compiling indexmap v1.6.2
[INFO] [stderr]    Compiling rayon v1.5.1
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling parking_lot v0.11.1
[INFO] [stderr]    Compiling quote v1.0.9
[INFO] [stderr]    Compiling rand v0.8.4
[INFO] [stderr]    Compiling num-format v0.4.0
[INFO] [stderr]    Compiling crossbeam-epoch v0.9.5
[INFO] [stderr]    Compiling crossbeam-deque v0.8.1
[INFO] [stderr]    Compiling rayon-core v1.9.1
[INFO] [stderr]    Compiling tempfile v3.2.0
[INFO] [stderr]    Compiling ordered-float v2.7.0
[INFO] [stderr]    Compiling console v0.14.1
[INFO] [stderr]    Compiling chrono v0.4.19
[INFO] [stderr]    Compiling indicatif v0.16.2
[INFO] [stderr]    Compiling dialoguer v0.8.0
[INFO] [stderr]    Compiling serde_derive v1.0.127
[INFO] [stderr]    Compiling thiserror-impl v1.0.26
[INFO] [stderr]    Compiling derivative v2.2.0
[INFO] [stderr]    Compiling thiserror v1.0.26
[INFO] [stderr]    Compiling serde v1.0.127
[INFO] [stderr]    Compiling serde_yaml v0.8.17
[INFO] [stderr]    Compiling serde-value v0.7.0
[INFO] [stderr]    Compiling log4rs v1.0.0
[INFO] [stderr]    Compiling segul v0.8.6 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 1m 37s
[INFO] running `Command { std: "docker" "inspect" "71bf8e6bfa882b591731124586038d0bcc49230fe6a6b92a2c339d9b584de3a2", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "71bf8e6bfa882b591731124586038d0bcc49230fe6a6b92a2c339d9b584de3a2", kill_on_drop: false }`
[INFO] [stdout] 71bf8e6bfa882b591731124586038d0bcc49230fe6a6b92a2c339d9b584de3a2
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+a77da2d454e6caa227a85b16410b95f93495e7e0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 3cad1241424e6f449dc742602ac07a13c4e05a93ce196454511a271c700a2868
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "3cad1241424e6f449dc742602ac07a13c4e05a93ce196454511a271c700a2868", kill_on_drop: false }`
[INFO] [stderr]    Compiling segul v0.8.6 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 10.54s
[INFO] running `Command { std: "docker" "inspect" "3cad1241424e6f449dc742602ac07a13c4e05a93ce196454511a271c700a2868", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "3cad1241424e6f449dc742602ac07a13c4e05a93ce196454511a271c700a2868", kill_on_drop: false }`
[INFO] [stdout] 3cad1241424e6f449dc742602ac07a13c4e05a93ce196454511a271c700a2868
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+a77da2d454e6caa227a85b16410b95f93495e7e0" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 5d014d950a08c94d1b57863c6910ceb4415d292bf20799375f5cdb6677827c1b
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "5d014d950a08c94d1b57863c6910ceb4415d292bf20799375f5cdb6677827c1b", kill_on_drop: false }`
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 0.10s
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/segul-587d4379f34956fd)
[INFO] [stdout] 
[INFO] [stdout] running 60 tests
[INFO] [stdout] test helper::alphabet::test::test_check_valid_dna ... ok
[INFO] [stdout] test cli::filter::test::test_min_taxa ... ok
[INFO] [stdout] test core::msa::test::test_get_gaps ... ok
[INFO] [stdout] test core::extract::tests::test_match_id ... ok
[INFO] [stdout] test helper::alphabet::test::test_check_invalid_dna ... ok
[INFO] [stdout] test helper::stats::test::count_parsimony_gap_test ... ok
[INFO] [stdout] test cli::filter::test::test_min_taxa_output_dir ... ok
[INFO] [stdout] test helper::stats::test::count_parsimony_test ... ok
[INFO] [stdout] test helper::stats::test::count_variable_sites_test ... ok
[INFO] [stdout] test helper::stats::test::pattern_count_test ... ok
[INFO] [stdout] test helper::stats::test::get_site_stats_test ... ok
[INFO] [stdout] test helper::stats::test::dna_count_test ... ok
[INFO] [stdout] test helper::stats::test::filter_min_tax_test ... ok
[INFO] [stdout] test helper::utils::test::time_parsing_test ... ok
[INFO] [stdout] test parser::fasta::test::check_is_alignment_test ... ok
[INFO] [stdout] test parser::fasta::test::simple_aa_fas_test ... ok
[INFO] [stdout] test parser::fasta::test::read_fasta_simple_test ... ok
[INFO] [stdout] test core::filter::test::test_min_pinf ... ok
[INFO] [stdout] test parser::fasta::test::interleaved_fas_test ... ok
[INFO] [stdout] test parser::fasta::test::check_isnot_alignment_test ... ok
[INFO] [stdout] test helper::finder::test::get_files_test ... ok
[INFO] [stdout] test parser::nexus::test::test_nexus_parse_interleave ... ok
[INFO] [stdout] test helper::sequence::test::alignment_simple_test ... ok
[INFO] [stdout] test parser::nexus::test::test_nexus_parse_interleave_res ... ok
[INFO] [stdout] test core::msa::test::test_concat_partition ... ok
[INFO] [stdout] test parser::nexus::test::test_check_match_ntax ... ok
[INFO] [stdout] test core::msa::test::test_concat_check_result ... ok
[INFO] [stdout] test core::extract::tests::test_get_matrix_id ... ok
[INFO] [stdout] test parser::nexus::test::test_nexus_parse_ntax ... ok
[INFO] [stdout] test parser::nexus::test::test_nexus_parsing_object ... ok
[INFO] [stdout] test helper::finder::test::id_test ... ok
[INFO] [stdout] test parser::nexus::test::test_nexus_simple_aa ... ok
[INFO] [stdout] test core::msa::test::test_concat_nexus ... ok
[INFO] [stdout] test parser::nexus::test::test_nexus_sequence ... ok
[INFO] [stdout] test parser::nexus::test::test_nexus_reading_simple ... ok
[INFO] [stdout] test parser::nexus::test::test_nexus_reading_complete ... ok
[INFO] [stdout] test parser::nexus::test::test_regex_command ... ok
[INFO] [stdout] test parser::phylip::test::test_phylip_simple_aa ... ok
[INFO] [stdout] test parser::phylip::test::test_parse_phylip_header ... ok
[INFO] [stdout] test parser::phylip::test::test_parse_matrix_interleave_phylip ... ok
[INFO] [stdout] test parser::phylip::test::test_read_phylip_simple ... ok
[INFO] [stdout] test parser::phylip::test::test_read_int_phylip_whitespaces ... ok
[INFO] [stdout] test parser::phylip::test::test_read_interleave_phylip ... ok
[INFO] [stdout] test parser::phylip::test::test_read_interleave_phylip_id ... ok
[INFO] [stdout] test parser::nexus::test::test_nexus_reading_tabulated ... ok
[INFO] [stdout] test writer::sequences::test::test_matrix_int ... ok
[INFO] [stdout] test writer::sequences::test::test_chunk_seq ... ok
[INFO] [stdout] test writer::sequences::test::test_insert_whitespaces ... ok
[INFO] [stdout] test parser::phylip::test::test_read_phylip_whitespace ... ok
[INFO] [stdout] test core::extract::tests::test_get_matrix_re ... ok
[INFO] [stdout] test helper::finder::test::check_empty_files_test - should panic ... ok
[INFO] [stdout] test helper::alphabet::test::test_check_invalid_dna_panic - should panic ... ok
[INFO] [stdout] test parser::nexus::test::test_check_invalid_nexus - should panic ... ok
[INFO] [stdout] test core::msa::test::test_get_alignment_panic - should panic ... ok
[INFO] [stdout] test parser::nexus::test::test_nexus_duplicate_panic - should panic ... ok
[INFO] [stdout] test parser::nexus::test::test_check_match_ntax_panic - should panic ... ok
[INFO] [stdout] test parser::nexus::test::test_nexus_id_duplicate_panic - should panic ... ok
[INFO] [stdout] test parser::phylip::test::test_read_interleave_phylip_panic - should panic ... ok
[INFO] [stdout] test parser::phylip::test::test_read_phylip_invalid - should panic ... ok
[INFO] [stdout] test parser::nexus::test::test_nexus_space_panic - should panic ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 60 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.18s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "5d014d950a08c94d1b57863c6910ceb4415d292bf20799375f5cdb6677827c1b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "5d014d950a08c94d1b57863c6910ceb4415d292bf20799375f5cdb6677827c1b", kill_on_drop: false }`
[INFO] [stdout] 5d014d950a08c94d1b57863c6910ceb4415d292bf20799375f5cdb6677827c1b