[INFO] fetching crate openmm-sys 7.4.1... [INFO] testing openmm-sys-7.4.1 against master#a77da2d454e6caa227a85b16410b95f93495e7e0 for pr-91031 [INFO] extracting crate openmm-sys 7.4.1 into /workspace/builds/worker-4/source [INFO] validating manifest of crates.io crate openmm-sys 7.4.1 on toolchain a77da2d454e6caa227a85b16410b95f93495e7e0 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a77da2d454e6caa227a85b16410b95f93495e7e0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate openmm-sys 7.4.1 [INFO] finished tweaking crates.io crate openmm-sys 7.4.1 [INFO] tweaked toml for crates.io crate openmm-sys 7.4.1 written to /workspace/builds/worker-4/source/Cargo.toml [INFO] crate crates.io crate openmm-sys 7.4.1 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a77da2d454e6caa227a85b16410b95f93495e7e0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+a77da2d454e6caa227a85b16410b95f93495e7e0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] a38c4eace0e34b92f9ec8afc60d2bf3b4f4f3589f9cea2720949e9ac5cfa9fdd [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "a38c4eace0e34b92f9ec8afc60d2bf3b4f4f3589f9cea2720949e9ac5cfa9fdd", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "a38c4eace0e34b92f9ec8afc60d2bf3b4f4f3589f9cea2720949e9ac5cfa9fdd", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "a38c4eace0e34b92f9ec8afc60d2bf3b4f4f3589f9cea2720949e9ac5cfa9fdd", kill_on_drop: false }` [INFO] [stdout] a38c4eace0e34b92f9ec8afc60d2bf3b4f4f3589f9cea2720949e9ac5cfa9fdd [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+a77da2d454e6caa227a85b16410b95f93495e7e0" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] c252bfaedc14ece9c6cadfc0ba9b8ba11987d68d43de6b6de11b47db15a853bf [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "c252bfaedc14ece9c6cadfc0ba9b8ba11987d68d43de6b6de11b47db15a853bf", kill_on_drop: false }` [INFO] [stderr] Compiling cc v1.0.59 [INFO] [stderr] Compiling cmake v0.1.44 [INFO] [stderr] Compiling openmm-sys v7.4.1 (/opt/rustwide/workdir) [INFO] [stderr] The following warnings were emitted during compilation: [INFO] [stderr] [INFO] [stderr] warning: [OpenMM-sys] Dynamically linking against the OpenMM library. [INFO] [stderr] [INFO] [stderr] error: failed to run custom build command for `openmm-sys v7.4.1 (/opt/rustwide/workdir)` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/openmm-sys-69488f43d73918b3/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] cargo:warning=[OpenMM-sys] Dynamically linking against the OpenMM library. [INFO] [stderr] running: "cmake" "/opt/rustwide/workdir/openmm" "-DOPENMM_BUILD_PYTHON_WRAPPERS=OFF" "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/openmm-sys-fe891622825c4d48/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_ASM_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_ASM_COMPILER=/usr/bin/cc" "-DCMAKE_BUILD_TYPE=Release" [INFO] [stderr] -- Found PythonInterp: /usr/bin/python (found version "2.7.18") [INFO] [stderr] -- The C compiler identification is GNU 9.3.0 [INFO] [stderr] -- The CXX compiler identification is GNU 9.3.0 [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc -- works [INFO] [stderr] -- Detecting C compiler ABI info [INFO] [stderr] -- Detecting C compiler ABI info - done [INFO] [stderr] -- Detecting C compile features [INFO] [stderr] -- Detecting C compile features - done [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ -- works [INFO] [stderr] -- Detecting CXX compiler ABI info [INFO] [stderr] -- Detecting CXX compiler ABI info - done [INFO] [stderr] -- Detecting CXX compile features [INFO] [stderr] -- Detecting CXX compile features - done [INFO] [stderr] -- Configuring incomplete, errors occurred! [INFO] [stderr] See also "/opt/rustwide/target/debug/build/openmm-sys-fe891622825c4d48/out/build/CMakeFiles/CMakeOutput.log". [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] fatal: not a git repository (or any parent up to mount point /opt/rustwide) [INFO] [stderr] Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). [INFO] [stderr] CMake Deprecation Warning at CMakeLists.txt:25 (CMAKE_POLICY): [INFO] [stderr] The OLD behavior for policy CMP0042 will be removed from a future version [INFO] [stderr] of CMake. [INFO] [stderr] [INFO] [stderr] The cmake-policies(7) manual explains that the OLD behaviors of all [INFO] [stderr] policies are deprecated and that a policy should be set to OLD only under [INFO] [stderr] specific short-term circumstances. Projects should be ported to the NEW [INFO] [stderr] behavior and not rely on setting a policy to OLD. [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Error at /usr/share/cmake-3.16/Modules/FindPackageHandleStandardArgs.cmake:146 (message): [INFO] [stderr] Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) [INFO] [stderr] Call Stack (most recent call first): [INFO] [stderr] /usr/share/cmake-3.16/Modules/FindPackageHandleStandardArgs.cmake:393 (_FPHSA_FAILURE_MESSAGE) [INFO] [stderr] /usr/share/cmake-3.16/Modules/FindDoxygen.cmake:633 (find_package_handle_standard_args) [INFO] [stderr] wrappers/CMakeLists.txt:1 (find_package) [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] thread 'main' panicked at ' [INFO] [stderr] command did not execute successfully, got: exit status: 1 [INFO] [stderr] [INFO] [stderr] build script failed, must exit now', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.44/src/lib.rs:885:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55bc91b7c6fc - std::backtrace_rs::backtrace::libunwind::trace::h7630ba4cba718aa0 [INFO] [stderr] at /rustc/a77da2d454e6caa227a85b16410b95f93495e7e0/library/std/src/../../backtrace/src/backtrace/libunwind.rs:93:5 [INFO] [stderr] 1: 0x55bc91b7c6fc - std::backtrace_rs::backtrace::trace_unsynchronized::he7498e79c157f5ac [INFO] [stderr] at /rustc/a77da2d454e6caa227a85b16410b95f93495e7e0/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x55bc91b7c6fc - std::sys_common::backtrace::_print_fmt::hdaebadaee17bca49 [INFO] [stderr] at /rustc/a77da2d454e6caa227a85b16410b95f93495e7e0/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x55bc91b7c6fc - ::fmt::h82b0e3aaf8a96140 [INFO] [stderr] at /rustc/a77da2d454e6caa227a85b16410b95f93495e7e0/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x55bc91b9ccbc - core::fmt::write::h72801a82c94e6ff1 [INFO] [stderr] at /rustc/a77da2d454e6caa227a85b16410b95f93495e7e0/library/core/src/fmt/mod.rs:1149:17 [INFO] [stderr] 5: 0x55bc91b78975 - std::io::Write::write_fmt::hc2da38dc44811df8 [INFO] [stderr] at /rustc/a77da2d454e6caa227a85b16410b95f93495e7e0/library/std/src/io/mod.rs:1697:15 [INFO] [stderr] 6: 0x55bc91b7e490 - std::sys_common::backtrace::_print::h1c9a1d19c48821c1 [INFO] [stderr] at /rustc/a77da2d454e6caa227a85b16410b95f93495e7e0/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x55bc91b7e490 - std::sys_common::backtrace::print::h7ce8802039fa9d0e [INFO] [stderr] at /rustc/a77da2d454e6caa227a85b16410b95f93495e7e0/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x55bc91b7e490 - std::panicking::default_hook::{{closure}}::hb2a74a8c1499c326 [INFO] [stderr] at /rustc/a77da2d454e6caa227a85b16410b95f93495e7e0/library/std/src/panicking.rs:211:50 [INFO] [stderr] 9: 0x55bc91b7e03b - std::panicking::default_hook::hf4f180b00076f2b2 [INFO] [stderr] at /rustc/a77da2d454e6caa227a85b16410b95f93495e7e0/library/std/src/panicking.rs:228:9 [INFO] [stderr] 10: 0x55bc91b7eb44 - std::panicking::rust_panic_with_hook::he85ce8435493b711 [INFO] [stderr] at /rustc/a77da2d454e6caa227a85b16410b95f93495e7e0/library/std/src/panicking.rs:606:17 [INFO] [stderr] 11: 0x55bc91b7e620 - std::panicking::begin_panic_handler::{{closure}}::h31e15f69e6235bd2 [INFO] [stderr] at /rustc/a77da2d454e6caa227a85b16410b95f93495e7e0/library/std/src/panicking.rs:502:13 [INFO] [stderr] 12: 0x55bc91b7cbb4 - std::sys_common::backtrace::__rust_end_short_backtrace::hfce2fadb61aaa3ae [INFO] [stderr] at /rustc/a77da2d454e6caa227a85b16410b95f93495e7e0/library/std/src/sys_common/backtrace.rs:139:18 [INFO] [stderr] 13: 0x55bc91b7e589 - rust_begin_unwind [INFO] [stderr] at /rustc/a77da2d454e6caa227a85b16410b95f93495e7e0/library/std/src/panicking.rs:498:5 [INFO] [stderr] 14: 0x55bc91b07201 - core::panicking::panic_fmt::h7b8580d81fcbbacd [INFO] [stderr] at /rustc/a77da2d454e6caa227a85b16410b95f93495e7e0/library/core/src/panicking.rs:107:14 [INFO] [stderr] 15: 0x55bc91b152dc - cmake::fail::h64f3d4527b1b7e2a [INFO] [stderr] 16: 0x55bc91b14d2a - cmake::run::h3c59c5198fc488f4 [INFO] [stderr] 17: 0x55bc91b111c5 - cmake::Config::build::h5d5b566e5e0a18b7 [INFO] [stderr] 18: 0x55bc91b0a5b9 - build_script_build::main::h7272524aef602cff [INFO] [stderr] 19: 0x55bc91b0bb73 - core::ops::function::FnOnce::call_once::h01fa509463bd424d [INFO] [stderr] 20: 0x55bc91b0c209 - std::sys_common::backtrace::__rust_begin_short_backtrace::hef9ef8781e7cae65 [INFO] [stderr] 21: 0x55bc91b0ba79 - std::rt::lang_start::{{closure}}::h2ae3821f4f9b6965 [INFO] [stderr] 22: 0x55bc91b7bf41 - core::ops::function::impls:: for &F>::call_once::h0e73392810ecd318 [INFO] [stderr] at /rustc/a77da2d454e6caa227a85b16410b95f93495e7e0/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 23: 0x55bc91b7bf41 - std::panicking::try::do_call::h12dcb4a4f352a507 [INFO] [stderr] at /rustc/a77da2d454e6caa227a85b16410b95f93495e7e0/library/std/src/panicking.rs:406:40 [INFO] [stderr] 24: 0x55bc91b7bf41 - std::panicking::try::h0d978c76ab4a3863 [INFO] [stderr] at /rustc/a77da2d454e6caa227a85b16410b95f93495e7e0/library/std/src/panicking.rs:370:19 [INFO] [stderr] 25: 0x55bc91b7bf41 - std::panic::catch_unwind::hab40227675186980 [INFO] [stderr] at /rustc/a77da2d454e6caa227a85b16410b95f93495e7e0/library/std/src/panic.rs:133:14 [INFO] [stderr] 26: 0x55bc91b7bf41 - std::rt::lang_start_internal::{{closure}}::hc34786299e7d2cf7 [INFO] [stderr] at /rustc/a77da2d454e6caa227a85b16410b95f93495e7e0/library/std/src/rt.rs:128:48 [INFO] [stderr] 27: 0x55bc91b7bf41 - std::panicking::try::do_call::h38e7a9128f21d387 [INFO] [stderr] at /rustc/a77da2d454e6caa227a85b16410b95f93495e7e0/library/std/src/panicking.rs:406:40 [INFO] [stderr] 28: 0x55bc91b7bf41 - std::panicking::try::h32d4e72fd8922bce [INFO] [stderr] at /rustc/a77da2d454e6caa227a85b16410b95f93495e7e0/library/std/src/panicking.rs:370:19 [INFO] [stderr] 29: 0x55bc91b7bf41 - std::panic::catch_unwind::h9a345671d889d41f [INFO] [stderr] at /rustc/a77da2d454e6caa227a85b16410b95f93495e7e0/library/std/src/panic.rs:133:14 [INFO] [stderr] 30: 0x55bc91b7bf41 - std::rt::lang_start_internal::h9e691a4f557eb2a3 [INFO] [stderr] at /rustc/a77da2d454e6caa227a85b16410b95f93495e7e0/library/std/src/rt.rs:128:20 [INFO] [stderr] 31: 0x55bc91b0ba61 - std::rt::lang_start::h9efc1d146aac1fec [INFO] [stderr] 32: 0x55bc91b0b163 - main [INFO] [stderr] 33: 0x7f0ba4dcf0b3 - __libc_start_main [INFO] [stderr] 34: 0x55bc91b0791e - _start [INFO] [stderr] 35: 0x0 - [INFO] running `Command { std: "docker" "inspect" "c252bfaedc14ece9c6cadfc0ba9b8ba11987d68d43de6b6de11b47db15a853bf", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "c252bfaedc14ece9c6cadfc0ba9b8ba11987d68d43de6b6de11b47db15a853bf", kill_on_drop: false }` [INFO] [stdout] c252bfaedc14ece9c6cadfc0ba9b8ba11987d68d43de6b6de11b47db15a853bf