[INFO] fetching crate noodles-fasta 0.4.1... [INFO] testing noodles-fasta-0.4.1 against master#a77da2d454e6caa227a85b16410b95f93495e7e0 for pr-91031 [INFO] extracting crate noodles-fasta 0.4.1 into /workspace/builds/worker-18/source [INFO] validating manifest of crates.io crate noodles-fasta 0.4.1 on toolchain a77da2d454e6caa227a85b16410b95f93495e7e0 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a77da2d454e6caa227a85b16410b95f93495e7e0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate noodles-fasta 0.4.1 [INFO] finished tweaking crates.io crate noodles-fasta 0.4.1 [INFO] tweaked toml for crates.io crate noodles-fasta 0.4.1 written to /workspace/builds/worker-18/source/Cargo.toml [INFO] crate crates.io crate noodles-fasta 0.4.1 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a77da2d454e6caa227a85b16410b95f93495e7e0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-18/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-18/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+a77da2d454e6caa227a85b16410b95f93495e7e0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 26ac8c1ff71c09c985d92b8463d1f8c077f0b8a784bebe8b005873daccab6dc2 [INFO] running `Command { std: "docker" "start" "-a" "26ac8c1ff71c09c985d92b8463d1f8c077f0b8a784bebe8b005873daccab6dc2", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "26ac8c1ff71c09c985d92b8463d1f8c077f0b8a784bebe8b005873daccab6dc2", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "26ac8c1ff71c09c985d92b8463d1f8c077f0b8a784bebe8b005873daccab6dc2", kill_on_drop: false }` [INFO] [stdout] 26ac8c1ff71c09c985d92b8463d1f8c077f0b8a784bebe8b005873daccab6dc2 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-18/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-18/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+a77da2d454e6caa227a85b16410b95f93495e7e0" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 7fc0a57a63463b8e7ece0cc248b0cdabdc14fa49ebdc36b13060c2cf8044c534 [INFO] running `Command { std: "docker" "start" "-a" "7fc0a57a63463b8e7ece0cc248b0cdabdc14fa49ebdc36b13060c2cf8044c534", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.107 [INFO] [stderr] Compiling crc32fast v1.2.1 [INFO] [stderr] Compiling adler v1.0.2 [INFO] [stderr] Compiling hashbrown v0.11.2 [INFO] [stderr] Compiling byteorder v1.4.3 [INFO] [stderr] Compiling memchr v2.4.1 [INFO] [stderr] Compiling bitflags v1.3.2 [INFO] [stderr] Compiling miniz_oxide v0.4.4 [INFO] [stderr] Compiling indexmap v1.7.0 [INFO] [stderr] Compiling flate2 v1.0.22 [INFO] [stderr] Compiling noodles-bgzf v0.6.0 [INFO] [stderr] Compiling noodles-sam v0.8.0 [INFO] [stderr] Compiling noodles-core v0.3.1 [INFO] [stderr] Compiling noodles-fasta v0.4.1 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 5.52s [INFO] running `Command { std: "docker" "inspect" "7fc0a57a63463b8e7ece0cc248b0cdabdc14fa49ebdc36b13060c2cf8044c534", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "7fc0a57a63463b8e7ece0cc248b0cdabdc14fa49ebdc36b13060c2cf8044c534", kill_on_drop: false }` [INFO] [stdout] 7fc0a57a63463b8e7ece0cc248b0cdabdc14fa49ebdc36b13060c2cf8044c534 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-18/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-18/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+a77da2d454e6caa227a85b16410b95f93495e7e0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] f159815f35e41d731555ad1ac87ac1d29eda0441bc45ef11ee66aa70338438da [INFO] running `Command { std: "docker" "start" "-a" "f159815f35e41d731555ad1ac87ac1d29eda0441bc45ef11ee66aa70338438da", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling noodles-fasta v0.4.1 (/opt/rustwide/workdir) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.95s [INFO] running `Command { std: "docker" "inspect" "f159815f35e41d731555ad1ac87ac1d29eda0441bc45ef11ee66aa70338438da", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f159815f35e41d731555ad1ac87ac1d29eda0441bc45ef11ee66aa70338438da", kill_on_drop: false }` [INFO] [stdout] f159815f35e41d731555ad1ac87ac1d29eda0441bc45ef11ee66aa70338438da [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-18/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-18/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+a77da2d454e6caa227a85b16410b95f93495e7e0" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] fd5faff1cb0aa8e88303f98b2a1444251de7d1d3811abfc221a73d40597adbe0 [INFO] running `Command { std: "docker" "start" "-a" "fd5faff1cb0aa8e88303f98b2a1444251de7d1d3811abfc221a73d40597adbe0", kill_on_drop: false }` [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.05s [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/noodles_fasta-a65a04298a217e74) [INFO] [stdout] [INFO] [stdout] running 16 tests [INFO] [stdout] test fai::record::tests::test_from_str ... ok [INFO] [stdout] test indexer::tests::test_consume_sequence_line ... ok [INFO] [stdout] test indexer::tests::test_index_record ... ok [INFO] [stdout] test indexer::tests::test_index_record_with_empty_seqeunce ... ok [INFO] [stdout] test indexer::tests::test_index_record_with_invalid_line_bases ... ok [INFO] [stdout] test indexer::tests::test_index_record_with_invalid_line_width ... ok [INFO] [stdout] test indexer::tests::test_len_with_right_trim ... ok [INFO] [stdout] test reader::tests::test_interval_to_slice_range ... ok [INFO] [stdout] test reader::tests::test_read_definition ... ok [INFO] [stdout] test reader::tests::test_read_line ... ok [INFO] [stdout] test reader::tests::test_read_sequence ... ok [INFO] [stdout] test reader::tests::test_read_sequence_after_seek ... ok [INFO] [stdout] test record::definition::tests::test_fmt ... ok [INFO] [stdout] test writer::tests::test_write_record_sequence ... ok [INFO] [stdout] test reader::tests::test_read_sequence_with_crlf ... ok [INFO] [stdout] test record::definition::tests::test_from_str ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 16 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Doc-tests noodles-fasta [INFO] [stdout] [INFO] [stdout] running 29 tests [INFO] [stdout] test src/lib.rs - index (line 75) - compile ... ok [INFO] [stdout] test src/reader.rs - reader::Reader>::seek (line 231) - compile ... ok [INFO] [stdout] test src/fai.rs - fai::read (line 25) - compile ... ok [INFO] [stdout] test src/lib.rs - (line 35) - compile ... ok [INFO] [stdout] test src/fai/reader.rs - fai::reader::Reader::read_index (line 33) ... FAILED [INFO] [stdout] test src/reader.rs - reader::Reader::records (line 112) ... FAILED [INFO] [stdout] test src/reader.rs - reader::Reader::query (line 173) ... FAILED [INFO] [stdout] test src/fai/writer.rs - fai::writer::Writer::write_index (line 43) ... FAILED [INFO] [stdout] test src/reader.rs - reader::Reader::read_definition (line 59) ... FAILED [INFO] [stdout] test src/reader.rs - reader::Reader::read_sequence (line 89) ... FAILED [INFO] [stdout] test src/fai/reader.rs - fai::reader::Reader::new (line 18) ... ok [INFO] [stdout] test src/reader.rs - reader::Reader::new (line 37) ... ok [INFO] [stdout] test src/writer.rs - writer::Writer::get_ref (line 35) ... ok [INFO] [stdout] test src/fai/writer.rs - fai::writer::Writer::get_ref (line 30) ... ok [INFO] [stdout] test src/fai/writer.rs - fai::writer::Writer::new (line 18) ... ok [INFO] [stdout] test src/writer.rs - writer::Writer::new (line 23) ... ok [INFO] [stdout] test src/writer.rs - writer::Writer::write_record (line 50) ... ok [INFO] [stdout] test src/record.rs - record::Record::description (line 88) ... ok [INFO] [stdout] test src/record.rs - record::Record::new (line 19) ... ok [INFO] [stdout] test src/record/definition.rs - record::definition::Definition::new (line 22) ... ok [INFO] [stdout] test src/record.rs - record::Record::reference_sequence_name (line 53) ... ok [INFO] [stdout] test src/record.rs - record::Record::name (line 71) ... ok [INFO] [stdout] test src/record.rs - record::Record::definition (line 36) ... ok [INFO] [stdout] test src/record/definition.rs - record::definition::Definition::description (line 61) ... ok [INFO] [stdout] test src/reader.rs - reader::Reader>::virtual_position (line 147) ... ok [INFO] [stdout] test src/reader.rs - reader::Reader::seek (line 260) ... ok [INFO] [stdout] test src/record.rs - record::Record::sequence (line 109) ... ok [INFO] [stdout] test src/record/definition.rs - record::definition::Definition::name (line 48) ... ok [INFO] [stdout] test src/record/definition.rs - record::definition::Definition::reference_sequence_name (line 34) ... ok [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] [INFO] [stdout] ---- src/fai/reader.rs - fai::reader::Reader::read_index (line 33) stdout ---- [INFO] [stdout] Couldn't compile the test. [INFO] [stdout] ---- src/reader.rs - reader::Reader::records (line 112) stdout ---- [INFO] [stdout] Couldn't compile the test. [INFO] [stdout] ---- src/reader.rs - reader::Reader::query (line 173) stdout ---- [INFO] [stdout] Couldn't compile the test. [INFO] [stdout] ---- src/fai/writer.rs - fai::writer::Writer::write_index (line 43) stdout ---- [INFO] [stdout] Couldn't compile the test. [INFO] [stdout] ---- src/reader.rs - reader::Reader::read_definition (line 59) stdout ---- [INFO] [stdout] Couldn't compile the test. [INFO] [stdout] ---- src/reader.rs - reader::Reader::read_sequence (line 89) stdout ---- [INFO] [stdout] Couldn't compile the test. [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] src/fai/reader.rs - fai::reader::Reader::read_index (line 33) [INFO] [stdout] src/fai/writer.rs - fai::writer::Writer::write_index (line 43) [INFO] [stdout] src/reader.rs - reader::Reader::query (line 173) [INFO] [stdout] src/reader.rs - reader::Reader::read_definition (line 59) [INFO] [stdout] src/reader.rs - reader::Reader::read_sequence (line 89) [INFO] [stdout] src/reader.rs - reader::Reader::records (line 112) [INFO] [stdout] [INFO] [stdout] test result: FAILED. 23 passed; 6 failed; 0 ignored; 0 measured; 0 filtered out; finished in 2.55s [INFO] [stdout] [INFO] [stderr] error: test failed, to rerun pass '--doc' [INFO] running `Command { std: "docker" "inspect" "fd5faff1cb0aa8e88303f98b2a1444251de7d1d3811abfc221a73d40597adbe0", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "fd5faff1cb0aa8e88303f98b2a1444251de7d1d3811abfc221a73d40597adbe0", kill_on_drop: false }` [INFO] [stdout] fd5faff1cb0aa8e88303f98b2a1444251de7d1d3811abfc221a73d40597adbe0