[INFO] cloning repository https://github.com/wwood/mfqe [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/wwood/mfqe" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fwwood%2Fmfqe", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fwwood%2Fmfqe'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 71f9bfe7689b8715194b8f0b2b38373b903e39f6 [INFO] testing wwood/mfqe against master#a77da2d454e6caa227a85b16410b95f93495e7e0 for pr-91031 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fwwood%2Fmfqe" "/workspace/builds/worker-12/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-12/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/wwood/mfqe on toolchain a77da2d454e6caa227a85b16410b95f93495e7e0 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a77da2d454e6caa227a85b16410b95f93495e7e0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/wwood/mfqe [INFO] finished tweaking git repo https://github.com/wwood/mfqe [INFO] tweaked toml for git repo https://github.com/wwood/mfqe written to /workspace/builds/worker-12/source/Cargo.toml [INFO] crate git repo https://github.com/wwood/mfqe already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a77da2d454e6caa227a85b16410b95f93495e7e0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+a77da2d454e6caa227a85b16410b95f93495e7e0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] d4648bbe3d4274984afe22c83e7a63d669326a66e629d8066d290c539406da12 [INFO] running `Command { std: "docker" "start" "-a" "d4648bbe3d4274984afe22c83e7a63d669326a66e629d8066d290c539406da12", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "d4648bbe3d4274984afe22c83e7a63d669326a66e629d8066d290c539406da12", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "d4648bbe3d4274984afe22c83e7a63d669326a66e629d8066d290c539406da12", kill_on_drop: false }` [INFO] [stdout] d4648bbe3d4274984afe22c83e7a63d669326a66e629d8066d290c539406da12 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+a77da2d454e6caa227a85b16410b95f93495e7e0" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 0e8066d1efd4840c201d7f2525962d0112efe52c9c3ed92243d87a7ba9c09567 [INFO] running `Command { std: "docker" "start" "-a" "0e8066d1efd4840c201d7f2525962d0112efe52c9c3ed92243d87a7ba9c09567", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling autocfg v1.0.1 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling const_fn v0.4.5 [INFO] [stderr] Compiling syn v1.0.58 [INFO] [stderr] Compiling serde v1.0.119 [INFO] [stderr] Compiling log v0.4.13 [INFO] [stderr] Compiling regex-syntax v0.6.22 [INFO] [stderr] Compiling cfg-if v0.1.10 [INFO] [stderr] Compiling adler v0.2.3 [INFO] [stderr] Compiling scoped_threadpool v0.1.9 [INFO] [stderr] Compiling humantime v2.0.1 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling buf_redux v0.8.4 [INFO] [stderr] Compiling clap v2.33.3 [INFO] [stderr] Compiling thread_local v1.1.0 [INFO] [stderr] Compiling crossbeam-utils v0.8.1 [INFO] [stderr] Compiling memoffset v0.6.1 [INFO] [stderr] Compiling miniz_oxide v0.4.3 [INFO] [stderr] Compiling crossbeam-epoch v0.9.1 [INFO] [stderr] Compiling crossbeam-queue v0.3.1 [INFO] [stderr] Compiling crossbeam-channel v0.5.0 [INFO] [stderr] Compiling regex v1.4.3 [INFO] [stderr] Compiling flate2 v1.0.19 [INFO] [stderr] Compiling crossbeam-deque v0.8.0 [INFO] [stderr] Compiling crossbeam v0.8.0 [INFO] [stderr] Compiling env_logger v0.8.2 [INFO] [stderr] Compiling serde_derive v1.0.119 [INFO] [stderr] Compiling seq_io v0.3.1 [INFO] [stderr] Compiling mfqe v0.5.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: multiple lines skipped by escaped newline [INFO] [stdout] --> src/main.rs:32:18 [INFO] [stdout] | [INFO] [stdout] 32 | \n\ [INFO] [stdout] | __________________^ [INFO] [stdout] 33 | | [INFO] [stdout] 34 | | Extract one or more sets of reads from a FASTQ (or \ [INFO] [stdout] | |_______________^ skipping everything up to and including this point [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: multiple lines skipped by escaped newline [INFO] [stdout] --> src/main.rs:35:63 [INFO] [stdout] | [INFO] [stdout] 35 | FASTA) file by specifying their read names.\n\n\ [INFO] [stdout] | _______________________________________________________________^ [INFO] [stdout] 36 | | [INFO] [stdout] 37 | | Read name files are uncompressed text files with read names \ [INFO] [stdout] | |_______________^ skipping everything up to and including this point [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: multiple lines skipped by escaped newline [INFO] [stdout] --> src/main.rs:38:37 [INFO] [stdout] | [INFO] [stdout] 38 | (without comments).\n\ [INFO] [stdout] | _____________________________________^ [INFO] [stdout] 39 | | [INFO] [stdout] 40 | | Output is gzip-compressed unless --output-uncompressed is specified, input is uncompressed.\n\ [INFO] [stdout] | |_______________^ skipping everything up to and including this point [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 3 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 1m 02s [INFO] running `Command { std: "docker" "inspect" "0e8066d1efd4840c201d7f2525962d0112efe52c9c3ed92243d87a7ba9c09567", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "0e8066d1efd4840c201d7f2525962d0112efe52c9c3ed92243d87a7ba9c09567", kill_on_drop: false }` [INFO] [stdout] 0e8066d1efd4840c201d7f2525962d0112efe52c9c3ed92243d87a7ba9c09567 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+a77da2d454e6caa227a85b16410b95f93495e7e0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 47d8ab249c065ac6a8bf0981267ef9329b7a8cc29692f0fdd8f3566a6195f138 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "47d8ab249c065ac6a8bf0981267ef9329b7a8cc29692f0fdd8f3566a6195f138", kill_on_drop: false }` [INFO] [stderr] Compiling getrandom v0.1.16 [INFO] [stderr] Compiling gimli v0.23.0 [INFO] [stderr] Compiling failure_derive v0.1.8 [INFO] [stderr] Compiling object v0.22.0 [INFO] [stderr] Compiling rustc-demangle v0.1.18 [INFO] [stderr] Compiling ppv-lite86 v0.2.10 [INFO] [stderr] Compiling environment v0.1.1 [INFO] [stderr] Compiling colored v1.9.3 [INFO] [stderr] Compiling serde_json v1.0.61 [INFO] [stderr] Compiling synstructure v0.12.4 [INFO] [stdout] warning: multiple lines skipped by escaped newline [INFO] [stdout] --> src/main.rs:32:18 [INFO] [stdout] | [INFO] [stdout] 32 | \n\ [INFO] [stdout] | __________________^ [INFO] [stdout] 33 | | [INFO] [stdout] 34 | | Extract one or more sets of reads from a FASTQ (or \ [INFO] [stdout] | |_______________^ skipping everything up to and including this point [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: multiple lines skipped by escaped newline [INFO] [stdout] --> src/main.rs:35:63 [INFO] [stdout] | [INFO] [stdout] 35 | FASTA) file by specifying their read names.\n\n\ [INFO] [stdout] | _______________________________________________________________^ [INFO] [stdout] 36 | | [INFO] [stdout] 37 | | Read name files are uncompressed text files with read names \ [INFO] [stdout] | |_______________^ skipping everything up to and including this point [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: multiple lines skipped by escaped newline [INFO] [stdout] --> src/main.rs:38:37 [INFO] [stdout] | [INFO] [stdout] 38 | (without comments).\n\ [INFO] [stdout] | _____________________________________^ [INFO] [stdout] 39 | | [INFO] [stdout] 40 | | Output is gzip-compressed unless --output-uncompressed is specified, input is uncompressed.\n\ [INFO] [stdout] | |_______________^ skipping everything up to and including this point [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 3 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Compiling rand_core v0.5.1 [INFO] [stderr] Compiling rand_chacha v0.2.2 [INFO] [stderr] Compiling rand v0.7.3 [INFO] [stderr] Compiling tempfile v3.1.0 [INFO] [stderr] Compiling addr2line v0.14.1 [INFO] [stderr] Compiling backtrace v0.3.55 [INFO] [stderr] Compiling failure v0.1.8 [INFO] [stderr] Compiling assert_cli v0.6.3 [INFO] [stderr] Compiling mfqe v0.5.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: multiple lines skipped by escaped newline [INFO] [stdout] --> src/main.rs:32:18 [INFO] [stdout] | [INFO] [stdout] 32 | \n\ [INFO] [stdout] | __________________^ [INFO] [stdout] 33 | | [INFO] [stdout] 34 | | Extract one or more sets of reads from a FASTQ (or \ [INFO] [stdout] | |_______________^ skipping everything up to and including this point [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: multiple lines skipped by escaped newline [INFO] [stdout] --> src/main.rs:35:63 [INFO] [stdout] | [INFO] [stdout] 35 | FASTA) file by specifying their read names.\n\n\ [INFO] [stdout] | _______________________________________________________________^ [INFO] [stdout] 36 | | [INFO] [stdout] 37 | | Read name files are uncompressed text files with read names \ [INFO] [stdout] | |_______________^ skipping everything up to and including this point [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: multiple lines skipped by escaped newline [INFO] [stdout] --> src/main.rs:38:37 [INFO] [stdout] | [INFO] [stdout] 38 | (without comments).\n\ [INFO] [stdout] | _____________________________________^ [INFO] [stdout] 39 | | [INFO] [stdout] 40 | | Output is gzip-compressed unless --output-uncompressed is specified, input is uncompressed.\n\ [INFO] [stdout] | |_______________^ skipping everything up to and including this point [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 3 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 20.41s [INFO] running `Command { std: "docker" "inspect" "47d8ab249c065ac6a8bf0981267ef9329b7a8cc29692f0fdd8f3566a6195f138", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "47d8ab249c065ac6a8bf0981267ef9329b7a8cc29692f0fdd8f3566a6195f138", kill_on_drop: false }` [INFO] [stdout] 47d8ab249c065ac6a8bf0981267ef9329b7a8cc29692f0fdd8f3566a6195f138 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+a77da2d454e6caa227a85b16410b95f93495e7e0" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 6a761a7bca11addcc39102190709f292020472fa0eb45d23ccae7074e56c94ad [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "6a761a7bca11addcc39102190709f292020472fa0eb45d23ccae7074e56c94ad", kill_on_drop: false }` [INFO] [stderr] warning: multiple lines skipped by escaped newline [INFO] [stderr] --> src/main.rs:32:18 [INFO] [stderr] | [INFO] [stderr] 32 | \n\ [INFO] [stderr] | __________________^ [INFO] [stderr] 33 | | [INFO] [stderr] 34 | | Extract one or more sets of reads from a FASTQ (or \ [INFO] [stderr] | |_______________^ skipping everything up to and including this point [INFO] [stderr] [INFO] [stderr] warning: multiple lines skipped by escaped newline [INFO] [stderr] --> src/main.rs:35:63 [INFO] [stderr] | [INFO] [stderr] 35 | FASTA) file by specifying their read names.\n\n\ [INFO] [stderr] | _______________________________________________________________^ [INFO] [stderr] 36 | | [INFO] [stderr] 37 | | Read name files are uncompressed text files with read names \ [INFO] [stderr] | |_______________^ skipping everything up to and including this point [INFO] [stderr] [INFO] [stderr] warning: multiple lines skipped by escaped newline [INFO] [stderr] --> src/main.rs:38:37 [INFO] [stderr] | [INFO] [stderr] 38 | (without comments).\n\ [INFO] [stderr] | _____________________________________^ [INFO] [stderr] 39 | | [INFO] [stderr] 40 | | Output is gzip-compressed unless --output-uncompressed is specified, input is uncompressed.\n\ [INFO] [stderr] | |_______________^ skipping everything up to and including this point [INFO] [stderr] [INFO] [stderr] warning: `mfqe` (bin "mfqe") generated 3 warnings [INFO] [stderr] warning: `mfqe` (bin "mfqe" test) generated 3 warnings (3 duplicates) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.08s [INFO] [stdout] [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/mfqe-0e96a8c5a2def569) [INFO] [stdout] running 0 tests [INFO] [stderr] Running tests/test_cmdline.rs (/opt/rustwide/target/debug/deps/test_cmdline-c346caff5792a19c) [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 6 tests [INFO] [stdout] test tests::test_fasta_by_stdin ... ok [INFO] [stdout] test tests::test_fastq_by_file_empty_lines_in_read_names ... ok [INFO] [stdout] test tests::test_fasta_by_file ... ok [INFO] [stdout] test tests::test_fastq_by_file ... ok [INFO] [stdout] test tests::test_define_sequence_names ... ok [INFO] [stdout] test tests::test_fastq_by_stdin ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 6 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.47s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "6a761a7bca11addcc39102190709f292020472fa0eb45d23ccae7074e56c94ad", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "6a761a7bca11addcc39102190709f292020472fa0eb45d23ccae7074e56c94ad", kill_on_drop: false }` [INFO] [stdout] 6a761a7bca11addcc39102190709f292020472fa0eb45d23ccae7074e56c94ad