[INFO] cloning repository https://github.com/tolkit/vcf2msa
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/tolkit/vcf2msa" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Ftolkit%2Fvcf2msa", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Ftolkit%2Fvcf2msa'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 809cb881b4b4e942de5fb7765cd6b7da8e05505d
[INFO] testing tolkit/vcf2msa against master#a77da2d454e6caa227a85b16410b95f93495e7e0 for pr-91031
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Ftolkit%2Fvcf2msa" "/workspace/builds/worker-9/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-9/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/tolkit/vcf2msa on toolchain a77da2d454e6caa227a85b16410b95f93495e7e0
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a77da2d454e6caa227a85b16410b95f93495e7e0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/tolkit/vcf2msa
[INFO] finished tweaking git repo https://github.com/tolkit/vcf2msa
[INFO] tweaked toml for git repo https://github.com/tolkit/vcf2msa written to /workspace/builds/worker-9/source/Cargo.toml
[INFO] crate git repo https://github.com/tolkit/vcf2msa already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a77da2d454e6caa227a85b16410b95f93495e7e0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+a77da2d454e6caa227a85b16410b95f93495e7e0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] b2b191aa73ae43e29d07a5e9e26083edf261d383869b9e494d78cb0a2d4956d8
[INFO] running `Command { std: "docker" "start" "-a" "b2b191aa73ae43e29d07a5e9e26083edf261d383869b9e494d78cb0a2d4956d8", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "b2b191aa73ae43e29d07a5e9e26083edf261d383869b9e494d78cb0a2d4956d8", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "b2b191aa73ae43e29d07a5e9e26083edf261d383869b9e494d78cb0a2d4956d8", kill_on_drop: false }`
[INFO] [stdout] b2b191aa73ae43e29d07a5e9e26083edf261d383869b9e494d78cb0a2d4956d8
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+a77da2d454e6caa227a85b16410b95f93495e7e0" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 8cc315f373ba8be275cc01e87c2aa01d03e370db9b8159e0ec409f22b9632fb3
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "8cc315f373ba8be275cc01e87c2aa01d03e370db9b8159e0ec409f22b9632fb3", kill_on_drop: false }`
[INFO] [stderr]    Compiling syn v1.0.77
[INFO] [stderr]    Compiling autocfg v1.0.1
[INFO] [stderr]    Compiling libc v0.2.103
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling pkg-config v0.3.20
[INFO] [stderr]    Compiling lazy_static v1.4.0
[INFO] [stderr]    Compiling typenum v1.14.0
[INFO] [stderr]    Compiling anyhow v1.0.44
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling bio v0.37.1
[INFO] [stderr]    Compiling ieee754 v0.2.6
[INFO] [stderr]    Compiling triple_accel v0.4.0
[INFO] [stderr]    Compiling linear-map v1.2.0
[INFO] [stderr]    Compiling ansi_term v0.11.0
[INFO] [stderr]    Compiling strsim v0.8.0
[INFO] [stderr]    Compiling bytecount v0.6.2
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling tinyvec v1.5.0
[INFO] [stderr]    Compiling aho-corasick v0.7.18
[INFO] [stderr]    Compiling csv-core v0.1.10
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling num-traits v0.2.14
[INFO] [stderr]    Compiling num-integer v0.1.44
[INFO] [stderr]    Compiling num-rational v0.4.0
[INFO] [stderr]    Compiling indexmap v1.7.0
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling regex v1.5.4
[INFO] [stderr]    Compiling unicode-normalization v0.1.19
[INFO] [stderr]    Compiling jobserver v0.1.24
[INFO] [stderr]    Compiling getrandom v0.2.3
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling rand_core v0.6.3
[INFO] [stderr]    Compiling petgraph v0.5.1
[INFO] [stderr]    Compiling cc v1.0.70
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling num-complex v0.4.0
[INFO] [stderr]    Compiling approx v0.5.0
[INFO] [stderr]    Compiling ordered-float v1.1.1
[INFO] [stderr]    Compiling itertools-num v0.1.3
[INFO] [stderr]    Compiling rand v0.8.4
[INFO] [stderr]    Compiling idna v0.2.3
[INFO] [stderr]    Compiling simba v0.5.1
[INFO] [stderr]    Compiling ndarray v0.15.3
[INFO] [stderr]    Compiling libz-sys v1.1.3
[INFO] [stderr]    Compiling hts-sys v1.11.1-fix2
[INFO] [stderr]    Compiling url v2.2.2
[INFO] [stderr]    Compiling rand_distr v0.4.2
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling serde_derive v1.0.130
[INFO] [stderr]    Compiling thiserror-impl v1.0.29
[INFO] [stderr]    Compiling nalgebra-macros v0.1.0
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling strum_macros v0.20.1
[INFO] [stderr]    Compiling enum-map-derive v0.6.0
[INFO] [stderr]    Compiling strum_macros v0.21.1
[INFO] [stderr]    Compiling getset v0.1.1
[INFO] [stderr]    Compiling enum-map v1.1.1
[INFO] [stderr]    Compiling thiserror v1.0.29
[INFO] [stderr]    Compiling bio-types v0.12.0
[INFO] [stderr]    Compiling rust-htslib v0.37.0
[INFO] [stderr]    Compiling nalgebra v0.27.1
[INFO] [stderr]    Compiling serde v1.0.130
[INFO] [stderr]    Compiling bstr v0.2.17
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling multimap v0.8.3
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling clap v2.33.3
[INFO] [stderr]    Compiling csv v1.1.6
[INFO] [stderr]    Compiling statrs v0.15.0
[INFO] [stderr]    Compiling vcf2msa v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 3m 01s
[INFO] running `Command { std: "docker" "inspect" "8cc315f373ba8be275cc01e87c2aa01d03e370db9b8159e0ec409f22b9632fb3", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "8cc315f373ba8be275cc01e87c2aa01d03e370db9b8159e0ec409f22b9632fb3", kill_on_drop: false }`
[INFO] [stdout] 8cc315f373ba8be275cc01e87c2aa01d03e370db9b8159e0ec409f22b9632fb3
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+a77da2d454e6caa227a85b16410b95f93495e7e0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] d6417cd3c636c8d49de5c1aba262b77eafd83eca2262747449045a605085973b
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "d6417cd3c636c8d49de5c1aba262b77eafd83eca2262747449045a605085973b", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]    Compiling vcf2msa v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 2.49s
[INFO] running `Command { std: "docker" "inspect" "d6417cd3c636c8d49de5c1aba262b77eafd83eca2262747449045a605085973b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "d6417cd3c636c8d49de5c1aba262b77eafd83eca2262747449045a605085973b", kill_on_drop: false }`
[INFO] [stdout] d6417cd3c636c8d49de5c1aba262b77eafd83eca2262747449045a605085973b
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+a77da2d454e6caa227a85b16410b95f93495e7e0" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] eb4fce96e8409b99399d0ce5d0912c9fe9c757667c6073fcbfb80fc42c3e8804
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "eb4fce96e8409b99399d0ce5d0912c9fe9c757667c6073fcbfb80fc42c3e8804", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 0.54s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/vcf2msa-39db7fb85b796b50)
[INFO] [stdout] running 0 tests
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/vcf2msa-717d62c07f120587)
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests vcf2msa
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "eb4fce96e8409b99399d0ce5d0912c9fe9c757667c6073fcbfb80fc42c3e8804", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "eb4fce96e8409b99399d0ce5d0912c9fe9c757667c6073fcbfb80fc42c3e8804", kill_on_drop: false }`
[INFO] [stdout] eb4fce96e8409b99399d0ce5d0912c9fe9c757667c6073fcbfb80fc42c3e8804