[INFO] cloning repository https://github.com/ryanobeirne/cgats [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/ryanobeirne/cgats" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fryanobeirne%2Fcgats", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fryanobeirne%2Fcgats'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 1aa6c30c8df9efb17841013de5793c89124d2ce8 [INFO] testing ryanobeirne/cgats against master#a77da2d454e6caa227a85b16410b95f93495e7e0 for pr-91031 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fryanobeirne%2Fcgats" "/workspace/builds/worker-94/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-94/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/ryanobeirne/cgats on toolchain a77da2d454e6caa227a85b16410b95f93495e7e0 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a77da2d454e6caa227a85b16410b95f93495e7e0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/ryanobeirne/cgats [INFO] removed 0 missing examples [INFO] finished tweaking git repo https://github.com/ryanobeirne/cgats [INFO] tweaked toml for git repo https://github.com/ryanobeirne/cgats written to /workspace/builds/worker-94/source/Cargo.toml [INFO] crate git repo https://github.com/ryanobeirne/cgats already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a77da2d454e6caa227a85b16410b95f93495e7e0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-94/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-94/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+a77da2d454e6caa227a85b16410b95f93495e7e0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 24fe42f80eae70fc9d091d2b36e9c649476cee0705fc65779b1da45b63fea292 [INFO] running `Command { std: "docker" "start" "-a" "24fe42f80eae70fc9d091d2b36e9c649476cee0705fc65779b1da45b63fea292", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "24fe42f80eae70fc9d091d2b36e9c649476cee0705fc65779b1da45b63fea292", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "24fe42f80eae70fc9d091d2b36e9c649476cee0705fc65779b1da45b63fea292", kill_on_drop: false }` [INFO] [stdout] 24fe42f80eae70fc9d091d2b36e9c649476cee0705fc65779b1da45b63fea292 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-94/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-94/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+a77da2d454e6caa227a85b16410b95f93495e7e0" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 26450e4af609ce39fcf0498db494a108afe2b06236678b01e448969716cda2eb [INFO] running `Command { std: "docker" "start" "-a" "26450e4af609ce39fcf0498db494a108afe2b06236678b01e448969716cda2eb", kill_on_drop: false }` [INFO] [stderr] Compiling autocfg v0.1.2 [INFO] [stderr] Compiling rand_core v0.4.0 [INFO] [stderr] Compiling libc v0.2.53 [INFO] [stderr] Compiling num-traits v0.2.6 [INFO] [stderr] Compiling num-integer v0.1.39 [INFO] [stderr] Compiling num-bigint v0.2.2 [INFO] [stderr] Compiling unicode-width v0.1.5 [INFO] [stderr] Compiling num-complex v0.2.1 [INFO] [stderr] Compiling num-iter v0.1.37 [INFO] [stderr] Compiling num-rational v0.2.1 [INFO] [stderr] Compiling bitflags v1.0.4 [INFO] [stderr] Compiling ansi_term v0.11.0 [INFO] [stderr] Compiling vec_map v0.8.1 [INFO] [stderr] Compiling strsim v0.8.0 [INFO] [stderr] Compiling rustc_tools_util v0.2.0 [INFO] [stderr] Compiling deltae v0.1.5 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling rand_core v0.3.1 [INFO] [stderr] Compiling rand_jitter v0.1.3 [INFO] [stderr] Compiling rand_xorshift v0.1.1 [INFO] [stderr] Compiling rand_isaac v0.1.1 [INFO] [stderr] Compiling rand_hc v0.1.0 [INFO] [stderr] Compiling rand_chacha v0.1.1 [INFO] [stderr] Compiling rand_pcg v0.1.2 [INFO] [stderr] Compiling rand v0.6.5 [INFO] [stderr] Compiling atty v0.2.11 [INFO] [stderr] Compiling rand_os v0.1.3 [INFO] [stderr] Compiling clap v2.33.0 [INFO] [stderr] Compiling num v0.2.0 [INFO] [stderr] Compiling statistical v1.0.0 [INFO] [stderr] Compiling cgats v0.1.8-alpha.1 (/opt/rustwide/workdir) [INFO] [stdout] warning: `#[macro_use]` only has an effect on `extern crate` and modules [INFO] [stdout] --> src/error.rs:7:1 [INFO] [stdout] | [INFO] [stdout] 7 | #[macro_use] [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_attributes)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string() [INFO] [stdout] --> src/error.rs:36:56 [INFO] [stdout] | [INFO] [stdout] 36 | write!(f, "CgatsError::{:?}: {}", &self, &self.description()) [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `de_cgats` [INFO] [stdout] --> src/de_report.rs:9:5 [INFO] [stdout] | [INFO] [stdout] 9 | de_cgats: Cgats, [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 3 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 55.78s [INFO] running `Command { std: "docker" "inspect" "26450e4af609ce39fcf0498db494a108afe2b06236678b01e448969716cda2eb", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "26450e4af609ce39fcf0498db494a108afe2b06236678b01e448969716cda2eb", kill_on_drop: false }` [INFO] [stdout] 26450e4af609ce39fcf0498db494a108afe2b06236678b01e448969716cda2eb [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-94/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-94/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+a77da2d454e6caa227a85b16410b95f93495e7e0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 2254d1ce0ebc075285f319ff96079df234af41406d454727db49051fb95a488d [INFO] running `Command { std: "docker" "start" "-a" "2254d1ce0ebc075285f319ff96079df234af41406d454727db49051fb95a488d", kill_on_drop: false }` [INFO] [stderr] Compiling rustc-serialize v0.3.24 [INFO] [stderr] Compiling rand v0.4.6 [INFO] [stdout] warning: `#[macro_use]` only has an effect on `extern crate` and modules [INFO] [stdout] --> src/error.rs:7:1 [INFO] [stdout] | [INFO] [stdout] 7 | #[macro_use] [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_attributes)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string() [INFO] [stdout] --> src/error.rs:36:56 [INFO] [stdout] | [INFO] [stdout] 36 | write!(f, "CgatsError::{:?}: {}", &self, &self.description()) [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `de_cgats` [INFO] [stdout] --> src/de_report.rs:9:5 [INFO] [stdout] | [INFO] [stdout] 9 | de_cgats: Cgats, [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 3 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Compiling rand v0.3.23 [INFO] [stderr] Compiling uuid v0.1.18 [INFO] [stderr] Compiling mktemp v0.3.1 [INFO] [stderr] Compiling cgats v0.1.8-alpha.1 (/opt/rustwide/workdir) [INFO] [stdout] warning: `#[macro_use]` only has an effect on `extern crate` and modules [INFO] [stdout] --> src/error.rs:7:1 [INFO] [stdout] | [INFO] [stdout] 7 | #[macro_use] [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_attributes)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string() [INFO] [stdout] --> src/error.rs:36:56 [INFO] [stdout] | [INFO] [stdout] 36 | write!(f, "CgatsError::{:?}: {}", &self, &self.description()) [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `de_cgats` [INFO] [stdout] --> src/de_report.rs:9:5 [INFO] [stdout] | [INFO] [stdout] 9 | de_cgats: Cgats, [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 3 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 5.79s [INFO] running `Command { std: "docker" "inspect" "2254d1ce0ebc075285f319ff96079df234af41406d454727db49051fb95a488d", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "2254d1ce0ebc075285f319ff96079df234af41406d454727db49051fb95a488d", kill_on_drop: false }` [INFO] [stdout] 2254d1ce0ebc075285f319ff96079df234af41406d454727db49051fb95a488d [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-94/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-94/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+a77da2d454e6caa227a85b16410b95f93495e7e0" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] ee615c4d098afcc06a2fcdb7a6e3daad102f32d05a1564e9222c0d0b76b40b53 [INFO] running `Command { std: "docker" "start" "-a" "ee615c4d098afcc06a2fcdb7a6e3daad102f32d05a1564e9222c0d0b76b40b53", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] warning: `#[macro_use]` only has an effect on `extern crate` and modules [INFO] [stderr] --> src/error.rs:7:1 [INFO] [stderr] | [INFO] [stderr] 7 | #[macro_use] [INFO] [stderr] | ^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_attributes)]` on by default [INFO] [stderr] [INFO] [stderr] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string() [INFO] [stderr] --> src/error.rs:36:56 [INFO] [stderr] | [INFO] [stderr] 36 | write!(f, "CgatsError::{:?}: {}", &self, &self.description()) [INFO] [stderr] | ^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(deprecated)]` on by default [INFO] [stderr] [INFO] [stderr] warning: field is never read: `de_cgats` [INFO] [stderr] --> src/de_report.rs:9:5 [INFO] [stderr] | [INFO] [stderr] 9 | de_cgats: Cgats, [INFO] [stderr] | ^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(dead_code)]` on by default [INFO] [stderr] [INFO] [stderr] warning: `cgats` (lib) generated 3 warnings [INFO] [stderr] warning: `cgats` (lib test) generated 3 warnings (3 duplicates) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 1.43s [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/cgats-034f1ba6b7ba3cbc) [INFO] [stdout] [INFO] [stdout] running 15 tests [INFO] [stdout] test compare::average_cgats ... ok [INFO] [stdout] test cgats::write_meta ... ok [INFO] [stdout] test data_vec::from_file ... ok [INFO] [stdout] test cgats::write_data_map ... ok [INFO] [stdout] test vendor::from_str ... ok [INFO] [stdout] test de_report::de_report ... ok [INFO] [stdout] test test::bad_files ... ok [INFO] [stdout] test compare::cat_cgats ... ok [INFO] [stdout] test cgats::cgats_display ... ok [INFO] [stdout] test cgats::write_fields ... ok [INFO] [stdout] test compare::reindex ... ok [INFO] [stdout] test compare::average_cb ... ok [INFO] [stdout] test compare::deltae ... ok [INFO] [stdout] test test::good_files ... ok [INFO] [stdout] test test::reconstruct ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 15 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 1.97s [INFO] [stdout] [INFO] [stderr] Doc-tests cgats [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "ee615c4d098afcc06a2fcdb7a6e3daad102f32d05a1564e9222c0d0b76b40b53", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "ee615c4d098afcc06a2fcdb7a6e3daad102f32d05a1564e9222c0d0b76b40b53", kill_on_drop: false }` [INFO] [stdout] ee615c4d098afcc06a2fcdb7a6e3daad102f32d05a1564e9222c0d0b76b40b53