[INFO] cloning repository https://github.com/natir/ssik [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/natir/ssik" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fnatir%2Fssik", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fnatir%2Fssik'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] abe560995116a5e853ab209010a617ec2c6bd6c6 [INFO] testing natir/ssik against master#a77da2d454e6caa227a85b16410b95f93495e7e0 for pr-91031 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fnatir%2Fssik" "/workspace/builds/worker-55/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-55/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/natir/ssik on toolchain a77da2d454e6caa227a85b16410b95f93495e7e0 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a77da2d454e6caa227a85b16410b95f93495e7e0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/natir/ssik [INFO] finished tweaking git repo https://github.com/natir/ssik [INFO] tweaked toml for git repo https://github.com/natir/ssik written to /workspace/builds/worker-55/source/Cargo.toml [INFO] crate git repo https://github.com/natir/ssik already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a77da2d454e6caa227a85b16410b95f93495e7e0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-55/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-55/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+a77da2d454e6caa227a85b16410b95f93495e7e0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 7b3379a9ba0e83533b86dd5ee7c2d82c68c80a7d3a6377c237df34bfdce46d1f [INFO] running `Command { std: "docker" "start" "-a" "7b3379a9ba0e83533b86dd5ee7c2d82c68c80a7d3a6377c237df34bfdce46d1f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "7b3379a9ba0e83533b86dd5ee7c2d82c68c80a7d3a6377c237df34bfdce46d1f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "7b3379a9ba0e83533b86dd5ee7c2d82c68c80a7d3a6377c237df34bfdce46d1f", kill_on_drop: false }` [INFO] [stdout] 7b3379a9ba0e83533b86dd5ee7c2d82c68c80a7d3a6377c237df34bfdce46d1f [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-55/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-55/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+a77da2d454e6caa227a85b16410b95f93495e7e0" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] efae6c972a88f725f05c3c382657477259d4966481d15d6bc7608760635c7339 [INFO] running `Command { std: "docker" "start" "-a" "efae6c972a88f725f05c3c382657477259d4966481d15d6bc7608760635c7339", kill_on_drop: false }` [INFO] [stderr] Compiling autocfg v1.0.1 [INFO] [stderr] Compiling proc-macro2 v1.0.32 [INFO] [stderr] Compiling unicode-xid v0.2.2 [INFO] [stderr] Compiling syn v1.0.81 [INFO] [stderr] Compiling libc v0.2.106 [INFO] [stderr] Compiling cfg-if v1.0.0 [INFO] [stderr] Compiling libm v0.2.1 [INFO] [stderr] Compiling version_check v0.9.3 [INFO] [stderr] Compiling memchr v2.4.1 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling serde_derive v1.0.130 [INFO] [stderr] Compiling pkg-config v0.3.22 [INFO] [stderr] Compiling cc v1.0.71 [INFO] [stderr] Compiling serde v1.0.130 [INFO] [stderr] Compiling unicode-segmentation v1.8.0 [INFO] [stderr] Compiling crossbeam-utils v0.8.5 [INFO] [stderr] Compiling ppv-lite86 v0.2.15 [INFO] [stderr] Compiling crc32fast v1.2.1 [INFO] [stderr] Compiling rawpointer v0.2.1 [INFO] [stderr] Compiling typenum v1.14.0 [INFO] [stderr] Compiling crossbeam-epoch v0.9.5 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling adler v1.0.2 [INFO] [stderr] Compiling paste v1.0.5 [INFO] [stderr] Compiling ryu v1.0.5 [INFO] [stderr] Compiling hashbrown v0.11.2 [INFO] [stderr] Compiling scopeguard v1.1.0 [INFO] [stderr] Compiling regex-syntax v0.6.25 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Compiling rayon-core v1.9.1 [INFO] [stderr] Compiling regex-automata v0.1.10 [INFO] [stderr] Compiling radium v0.6.2 [INFO] [stderr] Compiling either v1.6.1 [INFO] [stderr] Compiling anyhow v1.0.45 [INFO] [stderr] Compiling log v0.4.14 [INFO] [stderr] Compiling itoa v0.4.8 [INFO] [stderr] Compiling bio v0.39.0 [INFO] [stderr] Compiling termcolor v1.1.2 [INFO] [stderr] Compiling byteorder v1.4.3 [INFO] [stderr] Compiling bit-vec v0.6.3 [INFO] [stderr] Compiling fixedbitset v0.2.0 [INFO] [stderr] Compiling tap v1.0.1 [INFO] [stderr] Compiling unicode-width v0.1.9 [INFO] [stderr] Compiling fnv v1.0.7 [INFO] [stderr] Compiling strsim v0.10.0 [INFO] [stderr] Compiling humantime v2.1.0 [INFO] [stderr] Compiling strum v0.21.0 [INFO] [stderr] Compiling funty v1.2.0 [INFO] [stderr] Compiling bytecount v0.6.2 [INFO] [stderr] Compiling triple_accel v0.4.0 [INFO] [stderr] Compiling bitflags v1.3.2 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling cocktail v0.1.0 (https://github.com/natir/cocktail.git#464dfba9) [INFO] [stderr] Compiling matrixmultiply v0.3.1 [INFO] [stderr] Compiling wyz v0.4.0 [INFO] [stderr] Compiling fxhash v0.2.1 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling heck v0.3.3 [INFO] [stderr] Compiling proc-macro-error-attr v1.0.4 [INFO] [stderr] Compiling proc-macro-error v1.0.4 [INFO] [stderr] Compiling unicase v2.6.0 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Compiling textwrap v0.14.2 [INFO] [stderr] Compiling bit-set v0.5.2 [INFO] [stderr] Compiling itertools v0.10.1 [INFO] [stderr] Compiling num-traits v0.2.14 [INFO] [stderr] Compiling num-integer v0.1.44 [INFO] [stderr] Compiling memoffset v0.6.4 [INFO] [stderr] Compiling miniz_oxide v0.4.4 [INFO] [stderr] Compiling num-rational v0.4.0 [INFO] [stderr] Compiling indexmap v1.7.0 [INFO] [stderr] Compiling rayon v1.5.1 [INFO] [stderr] Compiling quote v1.0.10 [INFO] [stderr] Compiling bitvec v0.22.3 [INFO] [stderr] Compiling crossbeam-channel v0.5.1 [INFO] [stderr] Compiling getrandom v0.2.3 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling num_cpus v1.13.0 [INFO] [stderr] Compiling term_size v0.3.2 [INFO] [stderr] Compiling aho-corasick v0.7.18 [INFO] [stderr] Compiling csv-core v0.1.10 [INFO] [stderr] Compiling os_str_bytes v4.2.0 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling rand_core v0.6.3 [INFO] [stderr] Compiling petgraph v0.5.1 [INFO] [stderr] Compiling regex v1.5.4 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling bzip2-sys v0.1.11+1.0.8 [INFO] [stderr] Compiling lzma-sys v0.1.17 [INFO] [stderr] Compiling crossbeam-deque v0.8.1 [INFO] [stderr] Compiling rand v0.8.4 [INFO] [stderr] Compiling flate2 v1.0.22 [INFO] [stderr] Compiling xz2 v0.1.6 [INFO] [stderr] Compiling num-complex v0.4.0 [INFO] [stderr] Compiling approx v0.5.0 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling ordered-float v1.1.1 [INFO] [stderr] Compiling rand_distr v0.4.2 [INFO] [stderr] Compiling env_logger v0.9.0 [INFO] [stderr] Compiling bzip2 v0.4.3 [INFO] [stderr] Compiling simba v0.5.1 [INFO] [stderr] Compiling ndarray v0.15.3 [INFO] [stderr] Compiling thiserror-impl v1.0.30 [INFO] [stderr] Compiling nalgebra-macros v0.1.0 [INFO] [stderr] Compiling strum_macros v0.20.1 [INFO] [stderr] Compiling derive-new v0.5.9 [INFO] [stderr] Compiling enum-map-derive v0.6.0 [INFO] [stderr] Compiling getset v0.1.1 [INFO] [stderr] Compiling clap_derive v3.0.0-beta.5 [INFO] [stderr] Compiling strum_macros v0.21.1 [INFO] [stderr] Compiling enum-map v1.1.1 [INFO] [stderr] Compiling thiserror v1.0.30 [INFO] [stderr] Compiling bgzip v0.2.1 [INFO] [stderr] Compiling bio-types v0.12.0 [INFO] [stderr] Compiling niffler v2.3.2 [INFO] [stderr] Compiling clap v3.0.0-beta.5 [INFO] [stderr] Compiling nalgebra v0.27.1 [INFO] [stderr] Compiling bstr v0.2.17 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling multimap v0.8.3 [INFO] [stderr] Compiling csv v1.1.6 [INFO] [stderr] Compiling statrs v0.15.0 [INFO] [stderr] Compiling pcon v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 1m 14s [INFO] running `Command { std: "docker" "inspect" "efae6c972a88f725f05c3c382657477259d4966481d15d6bc7608760635c7339", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "efae6c972a88f725f05c3c382657477259d4966481d15d6bc7608760635c7339", kill_on_drop: false }` [INFO] [stdout] efae6c972a88f725f05c3c382657477259d4966481d15d6bc7608760635c7339 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-55/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-55/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+a77da2d454e6caa227a85b16410b95f93495e7e0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 7ddf0c7d65301e0ab8468db61c819038c620fce45dd49c5caaf86b5b381620df [INFO] running `Command { std: "docker" "start" "-a" "7ddf0c7d65301e0ab8468db61c819038c620fce45dd49c5caaf86b5b381620df", kill_on_drop: false }` [INFO] [stderr] Compiling pcon v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 4.75s [INFO] running `Command { std: "docker" "inspect" "7ddf0c7d65301e0ab8468db61c819038c620fce45dd49c5caaf86b5b381620df", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "7ddf0c7d65301e0ab8468db61c819038c620fce45dd49c5caaf86b5b381620df", kill_on_drop: false }` [INFO] [stdout] 7ddf0c7d65301e0ab8468db61c819038c620fce45dd49c5caaf86b5b381620df [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-55/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-55/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+a77da2d454e6caa227a85b16410b95f93495e7e0" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 15cf97974b4c0710ac9c3df3df7f935d0e403a20cd37b5a9a09e95b864276fd5 [INFO] running `Command { std: "docker" "start" "-a" "15cf97974b4c0710ac9c3df3df7f935d0e403a20cd37b5a9a09e95b864276fd5", kill_on_drop: false }` [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.11s [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/pcon-32864c520f819183) [INFO] [stdout] [INFO] [stdout] running 17 tests [INFO] [stdout] test counter::tests::count_fastq ... ignored [INFO] [stdout] test dump::tests::csv ... ok [INFO] [stdout] test counter::tests::deserialize ... ok [INFO] [stdout] test dump::tests::solid ... ok [INFO] [stdout] test spectrum::tests::failled_first_local_min ... ok [INFO] [stdout] test solid::tests::deserialize ... ok [INFO] [stdout] test spectrum::tests::failled_rarefaction ... ok [INFO] [stdout] test spectrum::tests::first_local_min ... ok [INFO] [stdout] test spectrum::tests::rarefaction ... ok [INFO] [stdout] test spectrum::tests::test_draw_hist ... ok [INFO] [stdout] test counter::tests::count_fasta ... ok [INFO] [stdout] test solid::tests::presence ... ok [INFO] [stdout] test solid::tests::set_value ... ok [INFO] [stdout] test counter::tests::serialize ... ok [INFO] [stdout] test dump::tests::spectrum ... ok [INFO] [stdout] test solid::tests::serialize ... ok [INFO] [stdout] test spectrum::tests::from_counter ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 16 passed; 0 failed; 1 ignored; 0 measured; 0 filtered out; finished in 0.32s [INFO] [stdout] [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/pcon-7700a604443d06ee) [INFO] [stdout] [INFO] [stderr] Doc-tests pcon [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "15cf97974b4c0710ac9c3df3df7f935d0e403a20cd37b5a9a09e95b864276fd5", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "15cf97974b4c0710ac9c3df3df7f935d0e403a20cd37b5a9a09e95b864276fd5", kill_on_drop: false }` [INFO] [stdout] 15cf97974b4c0710ac9c3df3df7f935d0e403a20cd37b5a9a09e95b864276fd5