[INFO] cloning repository https://github.com/ban-m/kiley [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/ban-m/kiley" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fban-m%2Fkiley", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fban-m%2Fkiley'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 5ccdedd159bf6a76d4c2d76d54f7c19ee8f768ce [INFO] testing ban-m/kiley against master#a77da2d454e6caa227a85b16410b95f93495e7e0 for pr-91031 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fban-m%2Fkiley" "/workspace/builds/worker-9/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-9/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/ban-m/kiley on toolchain a77da2d454e6caa227a85b16410b95f93495e7e0 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a77da2d454e6caa227a85b16410b95f93495e7e0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/ban-m/kiley [INFO] finished tweaking git repo https://github.com/ban-m/kiley [INFO] tweaked toml for git repo https://github.com/ban-m/kiley written to /workspace/builds/worker-9/source/Cargo.toml [INFO] crate git repo https://github.com/ban-m/kiley already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a77da2d454e6caa227a85b16410b95f93495e7e0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+a77da2d454e6caa227a85b16410b95f93495e7e0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 49a540dff06e68b5dc79602bf887a131de3aec3a0757a07ccaf60ad5893333b2 [INFO] running `Command { std: "docker" "start" "-a" "49a540dff06e68b5dc79602bf887a131de3aec3a0757a07ccaf60ad5893333b2", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "49a540dff06e68b5dc79602bf887a131de3aec3a0757a07ccaf60ad5893333b2", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "49a540dff06e68b5dc79602bf887a131de3aec3a0757a07ccaf60ad5893333b2", kill_on_drop: false }` [INFO] [stdout] 49a540dff06e68b5dc79602bf887a131de3aec3a0757a07ccaf60ad5893333b2 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+a77da2d454e6caa227a85b16410b95f93495e7e0" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 4c57da4f2a7535c1bedeb31683878b75b55fab818a1f637292678e2619b351cc [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "4c57da4f2a7535c1bedeb31683878b75b55fab818a1f637292678e2619b351cc", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.102 [INFO] [stderr] Compiling memchr v2.4.1 [INFO] [stderr] Compiling log v0.4.14 [INFO] [stderr] Compiling glob v0.3.0 [INFO] [stderr] Compiling version_check v0.1.5 [INFO] [stderr] Compiling gimli v0.25.0 [INFO] [stderr] Compiling adler v1.0.2 [INFO] [stderr] Compiling rustc-demangle v0.1.21 [INFO] [stderr] Compiling proc-macro2 v0.4.30 [INFO] [stderr] Compiling regex-syntax v0.6.25 [INFO] [stderr] Compiling termcolor v1.1.2 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling unicode-xid v0.1.0 [INFO] [stderr] Compiling bindgen v0.50.1 [INFO] [stderr] Compiling bitflags v1.3.2 [INFO] [stderr] Compiling crossbeam-epoch v0.9.5 [INFO] [stderr] Compiling libm v0.1.4 [INFO] [stderr] Compiling shlex v0.1.1 [INFO] [stderr] Compiling peeking_take_while v0.1.2 [INFO] [stderr] Compiling packed_simd_2 v0.3.6 [INFO] [stderr] Compiling humantime v2.1.0 [INFO] [stderr] Compiling bytecount v0.6.2 [INFO] [stderr] Compiling miniz_oxide v0.4.4 [INFO] [stderr] Compiling memoffset v0.6.4 [INFO] [stderr] Compiling rayon v1.5.1 [INFO] [stderr] Compiling humantime v1.3.0 [INFO] [stderr] Compiling crossbeam-utils v0.8.5 [INFO] [stderr] Compiling nom v4.2.3 [INFO] [stderr] Compiling crossbeam-channel v0.5.1 [INFO] [stderr] Compiling clang-sys v0.28.1 [INFO] [stderr] Compiling quote v0.6.13 [INFO] [stderr] Compiling crossbeam-deque v0.8.1 [INFO] [stderr] Compiling object v0.26.2 [INFO] [stderr] Compiling aho-corasick v0.7.18 [INFO] [stderr] Compiling jobserver v0.1.24 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling getrandom v0.2.3 [INFO] [stderr] Compiling num_cpus v1.13.0 [INFO] [stderr] Compiling clap v2.33.3 [INFO] [stderr] Compiling rand_core v0.6.3 [INFO] [stderr] Compiling cc v1.0.70 [INFO] [stderr] Compiling rayon-core v1.9.1 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling rand_xoshiro v0.6.0 [INFO] [stderr] Compiling cexpr v0.3.6 [INFO] [stderr] Compiling rand v0.8.4 [INFO] [stderr] Compiling regex v1.5.4 [INFO] [stderr] Compiling backtrace v0.3.61 [INFO] [stderr] Compiling libloading v0.5.2 [INFO] [stderr] Compiling addr2line v0.16.0 [INFO] [stderr] Compiling env_logger v0.6.2 [INFO] [stderr] Compiling env_logger v0.9.0 [INFO] [stderr] Compiling failure v0.1.8 [INFO] [stderr] Compiling which v2.0.1 [INFO] [stderr] Compiling edlib_sys v0.1.0 (https://github.com/ban-m/edlib-sys.git?branch=master#8c8b085c) [INFO] [stderr] Compiling poa_hmm v0.2.0 (https://github.com/ban-m/partial_order_alignment.git?branch=master#b4344184) [INFO] [stderr] Compiling kiley v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 2m 10s [INFO] running `Command { std: "docker" "inspect" "4c57da4f2a7535c1bedeb31683878b75b55fab818a1f637292678e2619b351cc", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "4c57da4f2a7535c1bedeb31683878b75b55fab818a1f637292678e2619b351cc", kill_on_drop: false }` [INFO] [stdout] 4c57da4f2a7535c1bedeb31683878b75b55fab818a1f637292678e2619b351cc [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+a77da2d454e6caa227a85b16410b95f93495e7e0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 30a3dbb1c63b158b7c53002e620d9088696ce1cb3ffd681e15a07875e1385397 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "30a3dbb1c63b158b7c53002e620d9088696ce1cb3ffd681e15a07875e1385397", kill_on_drop: false }` [INFO] [stderr] Compiling kiley v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 14.36s [INFO] running `Command { std: "docker" "inspect" "30a3dbb1c63b158b7c53002e620d9088696ce1cb3ffd681e15a07875e1385397", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "30a3dbb1c63b158b7c53002e620d9088696ce1cb3ffd681e15a07875e1385397", kill_on_drop: false }` [INFO] [stdout] 30a3dbb1c63b158b7c53002e620d9088696ce1cb3ffd681e15a07875e1385397 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+a77da2d454e6caa227a85b16410b95f93495e7e0" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 5302d12598472407b2f07c62e4808d7251e7ba49aedecd8653d368208f81333e [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "5302d12598472407b2f07c62e4808d7251e7ba49aedecd8653d368208f81333e", kill_on_drop: false }` [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.13s [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/kiley-1030197ab5d3b9f4) [INFO] [stdout] [INFO] [stdout] running 76 tests [INFO] [stdout] test bialignment::test::edist_dist_check ... ok [INFO] [stdout] test bialignment::test::edit_dist_ops_check ... ok [INFO] [stdout] test bialignment::test::edit_dist_fast_check_short ... ok [INFO] [stdout] test bialignment::test::banded_naive_check ... ok [INFO] [stdout] test bialignment::test::global_affine_check ... ok [INFO] [stdout] test bialignment::test::edit_dist_deletion_banded_diff_check ... FAILED [INFO] [stdout] test bialignment::test::edit_dist_deletion_from_check ... ok [INFO] [stdout] test bialignment::test::naive_edit_dist_modification_check ... ok [INFO] [stdout] test bialignment::test::edit_dist_banded_backward_check has been running for over 60 seconds [INFO] [stdout] test bialignment::test::edit_dist_banded_check has been running for over 60 seconds [INFO] [stdout] test bialignment::test::edit_dist_copy_from_check has been running for over 60 seconds [INFO] [stdout] test bialignment::test::edit_dist_deletion_diff_check has been running for over 60 seconds [INFO] [stdout] test bialignment::test::edit_dist_fast_check has been running for over 60 seconds [INFO] [stdout] test bialignment::test::edit_dist_fast_check_sim has been running for over 60 seconds [INFO] [stdout] test bialignment::test::edit_dist_insertion_banded_diff_check has been running for over 60 seconds [INFO] [stdout] test bialignment::test::edit_dist_insertion_diff_check has been running for over 60 seconds [INFO] [stdout] test bialignment::test::edit_dist_modification_check has been running for over 60 seconds [INFO] [stdout] test bialignment::test::edit_dist_mutation_banded_diff_check has been running for over 60 seconds [INFO] [stdout] test bialignment::test::edit_dist_mutation_diff_check has been running for over 60 seconds [INFO] [stdout] test bialignment::test::edit_dist_post_check has been running for over 60 seconds [INFO] [stdout] test bialignment::test::global_affine_banded_check has been running for over 60 seconds [INFO] [stdout] test gphmm::banded::gphmm_banded::align_test_banded has been running for over 60 seconds [INFO] [stdout] test bialignment::test::edit_dist_mutation_banded_diff_check ... FAILED [INFO] [stdout] test gphmm::banded::gphmm_banded::backward_banded_test has been running for over 60 seconds [INFO] [stdout] test gphmm::banded::gphmm_banded::fit_banded_test has been running for over 60 seconds [INFO] [stdout] test gphmm::banded::gphmm_banded::likelihood_banded_test has been running for over 60 seconds [INFO] [stdout] test bialignment::test::global_affine_banded_check ... ok [INFO] [stdout] test gphmm::banded::gphmm_banded::observation_prob_test ... ok [INFO] [stdout] test gphmm::banded::gphmm_banded::align_test_banded ... ok [INFO] [stdout] test gphmm::banded::gphmm_banded::profile_copy_banded_test has been running for over 60 seconds [INFO] [stdout] test gphmm::banded::gphmm_banded::likelihood_banded_test ... ok [INFO] [stdout] test gphmm::banded::gphmm_banded::backward_banded_test ... ok [INFO] [stdout] test gphmm::banded::gphmm_banded::profile_correction_banded_test has been running for over 60 seconds [INFO] [stdout] test gphmm::banded::gphmm_banded::profile_deletion_banded_test has been running for over 60 seconds [INFO] [stdout] test gphmm::banded::gphmm_banded::profile_insertion_banded_test has been running for over 60 seconds [INFO] [stdout] test bialignment::test::edit_dist_banded_backward_check ... ok [INFO] [stdout] test gphmm::banded::gphmm_banded::profile_lk_banded_test has been running for over 60 seconds [INFO] [stdout] test gphmm::banded::gphmm_banded::profile_lk_banded_test ... ok [ERROR] error running command: command timed out after 900 seconds [INFO] running `Command { std: "docker" "inspect" "5302d12598472407b2f07c62e4808d7251e7ba49aedecd8653d368208f81333e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "5302d12598472407b2f07c62e4808d7251e7ba49aedecd8653d368208f81333e", kill_on_drop: false }` [INFO] [stdout] 5302d12598472407b2f07c62e4808d7251e7ba49aedecd8653d368208f81333e