[INFO] cloning repository https://github.com/amsesk/protein2contig
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/amsesk/protein2contig" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Famsesk%2Fprotein2contig", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Famsesk%2Fprotein2contig'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] d2c1b32d69b4e995f0f4fa3bfc6735cd60222d8d
[INFO] testing amsesk/protein2contig against master#a77da2d454e6caa227a85b16410b95f93495e7e0 for pr-91031
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Famsesk%2Fprotein2contig" "/workspace/builds/worker-112/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-112/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/amsesk/protein2contig on toolchain a77da2d454e6caa227a85b16410b95f93495e7e0
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a77da2d454e6caa227a85b16410b95f93495e7e0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/amsesk/protein2contig
[INFO] finished tweaking git repo https://github.com/amsesk/protein2contig
[INFO] tweaked toml for git repo https://github.com/amsesk/protein2contig written to /workspace/builds/worker-112/source/Cargo.toml
[INFO] crate git repo https://github.com/amsesk/protein2contig already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a77da2d454e6caa227a85b16410b95f93495e7e0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-112/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-112/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+a77da2d454e6caa227a85b16410b95f93495e7e0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 0698a21344e1eb28a82d4f0970af5e359b6450ab113e089593356a7d339321e5
[INFO] running `Command { std: "docker" "start" "-a" "0698a21344e1eb28a82d4f0970af5e359b6450ab113e089593356a7d339321e5", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "0698a21344e1eb28a82d4f0970af5e359b6450ab113e089593356a7d339321e5", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "0698a21344e1eb28a82d4f0970af5e359b6450ab113e089593356a7d339321e5", kill_on_drop: false }`
[INFO] [stdout] 0698a21344e1eb28a82d4f0970af5e359b6450ab113e089593356a7d339321e5
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-112/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-112/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+a77da2d454e6caa227a85b16410b95f93495e7e0" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 362e370411fe386449f9425775a4403641f375a0e0d0e7c35975b19a8cfdbef8
[INFO] running `Command { std: "docker" "start" "-a" "362e370411fe386449f9425775a4403641f375a0e0d0e7c35975b19a8cfdbef8", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.12
[INFO] [stderr]    Compiling unicode-xid v0.2.0
[INFO] [stderr]    Compiling syn v1.0.20
[INFO] [stderr]    Compiling autocfg v1.0.0
[INFO] [stderr]    Compiling libc v0.2.70
[INFO] [stderr]    Compiling serde v1.0.110
[INFO] [stderr]    Compiling memchr v2.3.3
[INFO] [stderr]    Compiling version_check v0.9.1
[INFO] [stderr]    Compiling byteorder v1.3.4
[INFO] [stderr]    Compiling getrandom v0.1.14
[INFO] [stderr]    Compiling cfg-if v0.1.10
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling unicode-segmentation v1.6.0
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]    Compiling doc-comment v0.3.3
[INFO] [stderr]    Compiling ppv-lite86 v0.2.6
[INFO] [stderr]    Compiling ryu v1.0.4
[INFO] [stderr]    Compiling ndarray v0.13.1
[INFO] [stderr]    Compiling regex-syntax v0.6.17
[INFO] [stderr]    Compiling bitflags v1.2.1
[INFO] [stderr]    Compiling rawpointer v0.2.1
[INFO] [stderr]    Compiling unicode-width v0.1.7
[INFO] [stderr]    Compiling ordermap v0.3.5
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling either v1.5.3
[INFO] [stderr]    Compiling fixedbitset v0.1.9
[INFO] [stderr]    Compiling itoa v0.4.5
[INFO] [stderr]    Compiling bio v0.30.1-alpha.0 (https://github.com/rust-bio/rust-bio#0fe46244)
[INFO] [stderr]    Compiling bit-vec v0.6.2
[INFO] [stderr]    Compiling bytecount v0.6.0
[INFO] [stderr]    Compiling termcolor v1.1.0
[INFO] [stderr]    Compiling os_str_bytes v2.3.1
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling strsim v0.10.0
[INFO] [stderr]    Compiling strum v0.18.0
[INFO] [stderr]    Compiling thread_local v1.0.1
[INFO] [stderr]    Compiling itertools v0.9.0
[INFO] [stderr]    Compiling matrixmultiply v0.2.3
[INFO] [stderr]    Compiling textwrap v0.11.0
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling bit-set v0.5.2
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling petgraph v0.4.13
[INFO] [stderr]    Compiling heck v0.3.1
[INFO] [stderr]    Compiling proc-macro-error-attr v0.4.12
[INFO] [stderr]    Compiling proc-macro-error v0.4.12
[INFO] [stderr]    Compiling num-traits v0.2.11
[INFO] [stderr]    Compiling num-integer v0.1.42
[INFO] [stderr]    Compiling num-complex v0.2.4
[INFO] [stderr]    Compiling indexmap v1.3.2
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling aho-corasick v0.7.10
[INFO] [stderr]    Compiling csv-core v0.1.10
[INFO] [stderr]    Compiling regex-automata v0.1.9
[INFO] [stderr]    Compiling fxhash v0.2.1
[INFO] [stderr]    Compiling quote v1.0.4
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling rand_core v0.5.1
[INFO] [stderr]    Compiling rand_chacha v0.2.2
[INFO] [stderr]    Compiling rand v0.7.3
[INFO] [stderr]    Compiling itertools-num v0.1.3
[INFO] [stderr]    Compiling ordered-float v1.0.2
[INFO] [stderr]    Compiling approx v0.3.2
[INFO] [stderr]    Compiling regex v1.3.7
[INFO] [stderr]    Compiling statrs v0.12.0
[INFO] [stderr]    Compiling syn-mid v0.5.0
[INFO] [stderr]    Compiling serde_derive v1.0.110
[INFO] [stderr]    Compiling derive-new v0.5.8
[INFO] [stderr]    Compiling snafu-derive v0.6.8
[INFO] [stderr]    Compiling getset v0.0.9
[INFO] [stderr]    Compiling strum_macros v0.18.0
[INFO] [stderr]    Compiling clap_derive v3.0.0-beta.1
[INFO] [stderr]    Compiling snafu v0.6.8
[INFO] [stderr]    Compiling bstr v0.2.13
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling bio-types v0.6.0
[INFO] [stderr]    Compiling multimap v0.6.0
[INFO] [stderr]    Compiling clap v3.0.0-beta.1
[INFO] [stderr]    Compiling csv v1.1.3
[INFO] [stderr]    Compiling protein2contig v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 33.27s
[INFO] running `Command { std: "docker" "inspect" "362e370411fe386449f9425775a4403641f375a0e0d0e7c35975b19a8cfdbef8", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "362e370411fe386449f9425775a4403641f375a0e0d0e7c35975b19a8cfdbef8", kill_on_drop: false }`
[INFO] [stdout] 362e370411fe386449f9425775a4403641f375a0e0d0e7c35975b19a8cfdbef8
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-112/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-112/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+a77da2d454e6caa227a85b16410b95f93495e7e0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 07e523eb0bbd61ceb53adfdca66059403bbb63e05638f11ca317f3c62a188033
[INFO] running `Command { std: "docker" "start" "-a" "07e523eb0bbd61ceb53adfdca66059403bbb63e05638f11ca317f3c62a188033", kill_on_drop: false }`
[INFO] [stderr]    Compiling protein2contig v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 1.45s
[INFO] running `Command { std: "docker" "inspect" "07e523eb0bbd61ceb53adfdca66059403bbb63e05638f11ca317f3c62a188033", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "07e523eb0bbd61ceb53adfdca66059403bbb63e05638f11ca317f3c62a188033", kill_on_drop: false }`
[INFO] [stdout] 07e523eb0bbd61ceb53adfdca66059403bbb63e05638f11ca317f3c62a188033
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-112/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-112/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+a77da2d454e6caa227a85b16410b95f93495e7e0" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 0ecbf7eb2f2af205462e90f0395c1b3c86673d40996672297bd8b5413d606462
[INFO] running `Command { std: "docker" "start" "-a" "0ecbf7eb2f2af205462e90f0395c1b3c86673d40996672297bd8b5413d606462", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 0.50s
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/protein2contig-6994149f5ab229cd)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/protein2contig-02ad56fe79f11716)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests protein2contig
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "0ecbf7eb2f2af205462e90f0395c1b3c86673d40996672297bd8b5413d606462", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "0ecbf7eb2f2af205462e90f0395c1b3c86673d40996672297bd8b5413d606462", kill_on_drop: false }`
[INFO] [stdout] 0ecbf7eb2f2af205462e90f0395c1b3c86673d40996672297bd8b5413d606462