[INFO] cloning repository https://github.com/38/pyd4 [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/38/pyd4" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F38%2Fpyd4", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F38%2Fpyd4'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] ae36c59429e1ac7bc38bf4a4e6f3f2942bf58526 [INFO] testing 38/pyd4 against master#a77da2d454e6caa227a85b16410b95f93495e7e0 for pr-91031 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F38%2Fpyd4" "/workspace/builds/worker-2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-2/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/38/pyd4 on toolchain a77da2d454e6caa227a85b16410b95f93495e7e0 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a77da2d454e6caa227a85b16410b95f93495e7e0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/38/pyd4 [INFO] finished tweaking git repo https://github.com/38/pyd4 [INFO] tweaked toml for git repo https://github.com/38/pyd4 written to /workspace/builds/worker-2/source/Cargo.toml [INFO] crate git repo https://github.com/38/pyd4 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a77da2d454e6caa227a85b16410b95f93495e7e0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+a77da2d454e6caa227a85b16410b95f93495e7e0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] ae6703971edc366578093f978c6c786de5f244161c311c70475677bff45d8459 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "ae6703971edc366578093f978c6c786de5f244161c311c70475677bff45d8459", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "ae6703971edc366578093f978c6c786de5f244161c311c70475677bff45d8459", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "ae6703971edc366578093f978c6c786de5f244161c311c70475677bff45d8459", kill_on_drop: false }` [INFO] [stdout] ae6703971edc366578093f978c6c786de5f244161c311c70475677bff45d8459 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+a77da2d454e6caa227a85b16410b95f93495e7e0" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] d2d45cb1a435e3155267b6172373e0c308860f35fc0168d828d08db4238ea080 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "d2d45cb1a435e3155267b6172373e0c308860f35fc0168d828d08db4238ea080", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.99 [INFO] [stderr] Compiling syn v1.0.74 [INFO] [stderr] Compiling memchr v2.4.1 [INFO] [stderr] Compiling glob v0.3.0 [INFO] [stderr] Compiling crossbeam-utils v0.8.5 [INFO] [stderr] Compiling scopeguard v1.1.0 [INFO] [stderr] Compiling proc-macro-hack v0.5.19 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling crossbeam-epoch v0.9.5 [INFO] [stderr] Compiling termcolor v1.1.2 [INFO] [stderr] Compiling getrandom v0.1.16 [INFO] [stderr] Compiling bitflags v1.3.2 [INFO] [stderr] Compiling bindgen v0.55.1 [INFO] [stderr] Compiling serde v1.0.127 [INFO] [stderr] Compiling rayon-core v1.9.1 [INFO] [stderr] Compiling cfg-if v0.1.10 [INFO] [stderr] Compiling crc32fast v1.2.1 [INFO] [stderr] Compiling adler v1.0.2 [INFO] [stderr] Compiling pkg-config v0.3.19 [INFO] [stderr] Compiling unindent v0.1.7 [INFO] [stderr] Compiling serde_derive v1.0.127 [INFO] [stderr] Compiling inventory v0.1.10 [INFO] [stderr] Compiling ppv-lite86 v0.2.10 [INFO] [stderr] Compiling pyo3 v0.12.4 [INFO] [stderr] Compiling itoa v0.4.7 [INFO] [stderr] Compiling libloading v0.7.0 [INFO] [stderr] Compiling instant v0.1.10 [INFO] [stderr] Compiling nom v5.1.2 [INFO] [stderr] Compiling memoffset v0.6.4 [INFO] [stderr] Compiling miniz_oxide v0.4.4 [INFO] [stderr] Compiling rayon v1.5.1 [INFO] [stderr] Compiling lock_api v0.4.4 [INFO] [stderr] Compiling humantime v1.3.0 [INFO] [stderr] Compiling proc-macro2 v1.0.28 [INFO] [stderr] Compiling log v0.4.14 [INFO] [stderr] Compiling clang-sys v1.2.0 [INFO] [stderr] Compiling crossbeam-channel v0.5.1 [INFO] [stderr] Compiling quote v1.0.9 [INFO] [stderr] Compiling aho-corasick v0.7.18 [INFO] [stderr] Compiling crossbeam-deque v0.8.1 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling which v3.1.1 [INFO] [stderr] Compiling num_cpus v1.13.0 [INFO] [stderr] Compiling memmap v0.7.0 [INFO] [stderr] Compiling parking_lot_core v0.8.3 [INFO] [stderr] Compiling flate2 v1.0.20 [INFO] [stderr] Compiling clap v2.33.3 [INFO] [stderr] Compiling rand_core v0.5.1 [INFO] [stderr] Compiling paste-impl v0.1.18 [INFO] [stderr] Compiling parking_lot v0.11.1 [INFO] [stderr] Compiling rand_chacha v0.2.2 [INFO] [stderr] Compiling regex v1.5.4 [INFO] [stderr] Compiling rand v0.7.3 [INFO] [stderr] Compiling paste v0.1.18 [INFO] [stderr] Compiling cexpr v0.4.0 [INFO] [stderr] Compiling env_logger v0.7.1 [INFO] [stderr] Compiling serde_json v1.0.66 [INFO] [stderr] Compiling d4-framefile v0.2.18 (https://github.com/38/d4-format.git#fe86a8f0) [INFO] [stderr] Compiling pyo3-derive-backend v0.12.4 [INFO] [stderr] Compiling ghost v0.1.2 [INFO] [stderr] Compiling ctor v0.1.20 [INFO] [stderr] Compiling inventory-impl v0.1.10 [INFO] [stderr] Compiling indoc-impl v0.3.6 [INFO] [stderr] Compiling pyo3cls v0.12.4 [INFO] [stderr] Compiling indoc v0.3.6 [INFO] [stderr] Compiling d4-hts v0.2.18 (https://github.com/38/d4-format.git#fe86a8f0) [INFO] [stderr] error: failed to run custom build command for `d4-hts v0.2.18 (https://github.com/38/d4-format.git#fe86a8f0)` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/d4-hts-989510263f328e14/build-script-build` (exit status: 101) [INFO] [stderr] --- stderr [INFO] [stderr] + pushd /opt/rustwide/target/debug/build/d4-hts-28f6b93250a0736b/out [INFO] [stderr] + HTSLIB_VERSION=1.11 [INFO] [stderr] + rm -rf /opt/rustwide/target/debug/build/d4-hts-28f6b93250a0736b/out/htslib [INFO] [stderr] + git clone -b 1.11 https://github.com/samtools/htslib.git [INFO] [stderr] Cloning into 'htslib'... [INFO] [stderr] fatal: unable to access 'https://github.com/samtools/htslib.git/': Could not resolve host: github.com [INFO] [stderr] thread 'main' panicked at 'assertion failed: Command::new(\"bash\").args(&[\"build_htslib.sh\",\n &version]).stdout(std::process::Stdio::null()).spawn().expect(\"Unable to build htslib\").wait().unwrap().success()', /opt/rustwide/cargo-home/git/checkouts/d4-format-79e980b083c9a312/fe86a8f/d4-hts/build.rs:34:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x561b1bb8e82c - std::backtrace_rs::backtrace::libunwind::trace::h7630ba4cba718aa0 [INFO] [stderr] at /rustc/a77da2d454e6caa227a85b16410b95f93495e7e0/library/std/src/../../backtrace/src/backtrace/libunwind.rs:93:5 [INFO] [stderr] 1: 0x561b1bb8e82c - std::backtrace_rs::backtrace::trace_unsynchronized::he7498e79c157f5ac [INFO] [stderr] at /rustc/a77da2d454e6caa227a85b16410b95f93495e7e0/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x561b1bb8e82c - std::sys_common::backtrace::_print_fmt::hdaebadaee17bca49 [INFO] [stderr] at /rustc/a77da2d454e6caa227a85b16410b95f93495e7e0/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x561b1bb8e82c - ::fmt::h82b0e3aaf8a96140 [INFO] [stderr] at /rustc/a77da2d454e6caa227a85b16410b95f93495e7e0/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x561b1bbb3d3c - core::fmt::write::h72801a82c94e6ff1 [INFO] [stderr] at /rustc/a77da2d454e6caa227a85b16410b95f93495e7e0/library/core/src/fmt/mod.rs:1149:17 [INFO] [stderr] 5: 0x561b1bb8aa65 - std::io::Write::write_fmt::hc2da38dc44811df8 [INFO] [stderr] at /rustc/a77da2d454e6caa227a85b16410b95f93495e7e0/library/std/src/io/mod.rs:1697:15 [INFO] [stderr] 6: 0x561b1bb904d0 - std::sys_common::backtrace::_print::h1c9a1d19c48821c1 [INFO] [stderr] at /rustc/a77da2d454e6caa227a85b16410b95f93495e7e0/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x561b1bb904d0 - std::sys_common::backtrace::print::h7ce8802039fa9d0e [INFO] [stderr] at /rustc/a77da2d454e6caa227a85b16410b95f93495e7e0/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x561b1bb904d0 - std::panicking::default_hook::{{closure}}::hb2a74a8c1499c326 [INFO] [stderr] at /rustc/a77da2d454e6caa227a85b16410b95f93495e7e0/library/std/src/panicking.rs:211:50 [INFO] [stderr] 9: 0x561b1bb9007b - std::panicking::default_hook::hf4f180b00076f2b2 [INFO] [stderr] at /rustc/a77da2d454e6caa227a85b16410b95f93495e7e0/library/std/src/panicking.rs:228:9 [INFO] [stderr] 10: 0x561b1bb90b84 - std::panicking::rust_panic_with_hook::he85ce8435493b711 [INFO] [stderr] at /rustc/a77da2d454e6caa227a85b16410b95f93495e7e0/library/std/src/panicking.rs:606:17 [INFO] [stderr] 11: 0x561b1bb90632 - std::panicking::begin_panic_handler::{{closure}}::h31e15f69e6235bd2 [INFO] [stderr] at /rustc/a77da2d454e6caa227a85b16410b95f93495e7e0/library/std/src/panicking.rs:500:13 [INFO] [stderr] 12: 0x561b1bb8ece4 - std::sys_common::backtrace::__rust_end_short_backtrace::hfce2fadb61aaa3ae [INFO] [stderr] at /rustc/a77da2d454e6caa227a85b16410b95f93495e7e0/library/std/src/sys_common/backtrace.rs:139:18 [INFO] [stderr] 13: 0x561b1bb905c9 - rust_begin_unwind [INFO] [stderr] at /rustc/a77da2d454e6caa227a85b16410b95f93495e7e0/library/std/src/panicking.rs:498:5 [INFO] [stderr] 14: 0x561b1b6367f1 - core::panicking::panic_fmt::h7b8580d81fcbbacd [INFO] [stderr] at /rustc/a77da2d454e6caa227a85b16410b95f93495e7e0/library/core/src/panicking.rs:107:14 [INFO] [stderr] 15: 0x561b1b63673d - core::panicking::panic::h50b51d19800453c0 [INFO] [stderr] at /rustc/a77da2d454e6caa227a85b16410b95f93495e7e0/library/core/src/panicking.rs:48:5 [INFO] [stderr] 16: 0x561b1b6378ab - build_script_build::build_own_htslib::h2d496a6e93e55bc3 [INFO] [stderr] at /opt/rustwide/cargo-home/git/checkouts/d4-format-79e980b083c9a312/fe86a8f/d4-hts/build.rs:34:5 [INFO] [stderr] 17: 0x561b1b637d04 - build_script_build::main::hcc5028bfc228915a [INFO] [stderr] at /opt/rustwide/cargo-home/git/checkouts/d4-format-79e980b083c9a312/fe86a8f/d4-hts/build.rs:66:9 [INFO] [stderr] 18: 0x561b1b638f0b - core::ops::function::FnOnce::call_once::h8f4bac111583e346 [INFO] [stderr] at /rustc/a77da2d454e6caa227a85b16410b95f93495e7e0/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 19: 0x561b1b63935e - std::sys_common::backtrace::__rust_begin_short_backtrace::hf14c7cdb423b3740 [INFO] [stderr] at /rustc/a77da2d454e6caa227a85b16410b95f93495e7e0/library/std/src/sys_common/backtrace.rs:123:18 [INFO] [stderr] 20: 0x561b1b639421 - std::rt::lang_start::{{closure}}::h8326aa7f57da169d [INFO] [stderr] at /rustc/a77da2d454e6caa227a85b16410b95f93495e7e0/library/std/src/rt.rs:145:18 [INFO] [stderr] 21: 0x561b1bb8e071 - core::ops::function::impls:: for &F>::call_once::h0e73392810ecd318 [INFO] [stderr] at /rustc/a77da2d454e6caa227a85b16410b95f93495e7e0/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 22: 0x561b1bb8e071 - std::panicking::try::do_call::h12dcb4a4f352a507 [INFO] [stderr] at /rustc/a77da2d454e6caa227a85b16410b95f93495e7e0/library/std/src/panicking.rs:406:40 [INFO] [stderr] 23: 0x561b1bb8e071 - std::panicking::try::h0d978c76ab4a3863 [INFO] [stderr] at /rustc/a77da2d454e6caa227a85b16410b95f93495e7e0/library/std/src/panicking.rs:370:19 [INFO] [stderr] 24: 0x561b1bb8e071 - std::panic::catch_unwind::hab40227675186980 [INFO] [stderr] at /rustc/a77da2d454e6caa227a85b16410b95f93495e7e0/library/std/src/panic.rs:133:14 [INFO] [stderr] 25: 0x561b1bb8e071 - std::rt::lang_start_internal::{{closure}}::hc34786299e7d2cf7 [INFO] [stderr] at /rustc/a77da2d454e6caa227a85b16410b95f93495e7e0/library/std/src/rt.rs:128:48 [INFO] [stderr] 26: 0x561b1bb8e071 - std::panicking::try::do_call::h38e7a9128f21d387 [INFO] [stderr] at /rustc/a77da2d454e6caa227a85b16410b95f93495e7e0/library/std/src/panicking.rs:406:40 [INFO] [stderr] 27: 0x561b1bb8e071 - std::panicking::try::h32d4e72fd8922bce [INFO] [stderr] at /rustc/a77da2d454e6caa227a85b16410b95f93495e7e0/library/std/src/panicking.rs:370:19 [INFO] [stderr] 28: 0x561b1bb8e071 - std::panic::catch_unwind::h9a345671d889d41f [INFO] [stderr] at /rustc/a77da2d454e6caa227a85b16410b95f93495e7e0/library/std/src/panic.rs:133:14 [INFO] [stderr] 29: 0x561b1bb8e071 - std::rt::lang_start_internal::h9e691a4f557eb2a3 [INFO] [stderr] at /rustc/a77da2d454e6caa227a85b16410b95f93495e7e0/library/std/src/rt.rs:128:20 [INFO] [stderr] 30: 0x561b1b6393f0 - std::rt::lang_start::ha72f5a2a386ce9c6 [INFO] [stderr] at /rustc/a77da2d454e6caa227a85b16410b95f93495e7e0/library/std/src/rt.rs:144:17 [INFO] [stderr] 31: 0x561b1b63837c - main [INFO] [stderr] 32: 0x7f9e5f75f0b3 - __libc_start_main [INFO] [stderr] 33: 0x561b1b636fae - _start [INFO] [stderr] 34: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "d2d45cb1a435e3155267b6172373e0c308860f35fc0168d828d08db4238ea080", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "d2d45cb1a435e3155267b6172373e0c308860f35fc0168d828d08db4238ea080", kill_on_drop: false }` [INFO] [stdout] d2d45cb1a435e3155267b6172373e0c308860f35fc0168d828d08db4238ea080