[INFO] cloning repository https://github.com/10XGenomics/bamtofastq
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/10XGenomics/bamtofastq" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F10XGenomics%2Fbamtofastq", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F10XGenomics%2Fbamtofastq'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 8166d3d4fe4b986341cc266943d8873f6c1a58d4
[INFO] testing 10XGenomics/bamtofastq against master#a77da2d454e6caa227a85b16410b95f93495e7e0 for pr-91031
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F10XGenomics%2Fbamtofastq" "/workspace/builds/worker-74/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-74/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/10XGenomics/bamtofastq on toolchain a77da2d454e6caa227a85b16410b95f93495e7e0
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a77da2d454e6caa227a85b16410b95f93495e7e0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] removed /workspace/builds/worker-74/source/.cargo/config.toml
[INFO] started tweaking git repo https://github.com/10XGenomics/bamtofastq
[INFO] finished tweaking git repo https://github.com/10XGenomics/bamtofastq
[INFO] tweaked toml for git repo https://github.com/10XGenomics/bamtofastq written to /workspace/builds/worker-74/source/Cargo.toml
[INFO] crate git repo https://github.com/10XGenomics/bamtofastq already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a77da2d454e6caa227a85b16410b95f93495e7e0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-74/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-74/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+a77da2d454e6caa227a85b16410b95f93495e7e0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 96e215d49ec0a419a16472f39339237543390a13a12c838f8b053d9d596efa80
[INFO] running `Command { std: "docker" "start" "-a" "96e215d49ec0a419a16472f39339237543390a13a12c838f8b053d9d596efa80", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "96e215d49ec0a419a16472f39339237543390a13a12c838f8b053d9d596efa80", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "96e215d49ec0a419a16472f39339237543390a13a12c838f8b053d9d596efa80", kill_on_drop: false }`
[INFO] [stdout] 96e215d49ec0a419a16472f39339237543390a13a12c838f8b053d9d596efa80
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-74/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-74/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+a77da2d454e6caa227a85b16410b95f93495e7e0" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 4ecbec50fc20c7eb7ec52dac45008f3ba6a5e3e7fd897278ce91c0145273b0db
[INFO] running `Command { std: "docker" "start" "-a" "4ecbec50fc20c7eb7ec52dac45008f3ba6a5e3e7fd897278ce91c0145273b0db", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.103
[INFO] [stderr]    Compiling proc-macro2 v1.0.29
[INFO] [stderr]    Compiling unicode-xid v0.2.2
[INFO] [stderr]    Compiling syn v1.0.80
[INFO] [stderr]    Compiling memchr v2.4.1
[INFO] [stderr]    Compiling cfg-if v1.0.0
[INFO] [stderr]    Compiling pkg-config v0.3.20
[INFO] [stderr]    Compiling serde_derive v1.0.130
[INFO] [stderr]    Compiling serde v1.0.130
[INFO] [stderr]    Compiling lazy_static v1.4.0
[INFO] [stderr]    Compiling autocfg v1.0.1
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling tinyvec_macros v0.1.0
[INFO] [stderr]    Compiling matches v0.1.9
[INFO] [stderr]    Compiling adler v1.0.2
[INFO] [stderr]    Compiling unicode-segmentation v1.8.0
[INFO] [stderr]    Compiling crossbeam-utils v0.8.5
[INFO] [stderr]    Compiling gimli v0.25.0
[INFO] [stderr]    Compiling regex-syntax v0.6.25
[INFO] [stderr]    Compiling glob v0.3.0
[INFO] [stderr]    Compiling percent-encoding v2.1.0
[INFO] [stderr]    Compiling anyhow v1.0.44
[INFO] [stderr]    Compiling unicode-bidi v0.3.7
[INFO] [stderr]    Compiling ppv-lite86 v0.2.10
[INFO] [stderr]    Compiling crc32fast v1.2.1
[INFO] [stderr]    Compiling rustc-demangle v0.1.21
[INFO] [stderr]    Compiling ryu v1.0.5
[INFO] [stderr]    Compiling log v0.4.14
[INFO] [stderr]    Compiling byteorder v1.4.3
[INFO] [stderr]    Compiling regex-automata v0.1.10
[INFO] [stderr]    Compiling min-max-heap v1.3.0
[INFO] [stderr]    Compiling ieee754 v0.2.6
[INFO] [stderr]    Compiling either v1.6.1
[INFO] [stderr]    Compiling itoa v0.4.8
[INFO] [stderr]    Compiling linear-map v1.2.0
[INFO] [stderr]    Compiling remove_dir_all v0.5.3
[INFO] [stderr]    Compiling strsim v0.10.0
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling tinyvec v1.5.0
[INFO] [stderr]    Compiling itertools v0.10.1
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling heck v0.3.3
[INFO] [stderr]    Compiling form_urlencoded v1.0.1
[INFO] [stderr]    Compiling miniz_oxide v0.4.4
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling aho-corasick v0.7.18
[INFO] [stderr]    Compiling object v0.26.2
[INFO] [stderr]    Compiling csv-core v0.1.10
[INFO] [stderr]    Compiling unicode-normalization v0.1.19
[INFO] [stderr]    Compiling addr2line v0.16.0
[INFO] [stderr]    Compiling crossbeam-channel v0.5.1
[INFO] [stderr]    Compiling jobserver v0.1.24
[INFO] [stderr]    Compiling quote v1.0.10
[INFO] [stderr]    Compiling getrandom v0.2.3
[INFO] [stderr]    Compiling idna v0.2.3
[INFO] [stderr]    Compiling rand_core v0.6.3
[INFO] [stderr]    Compiling cc v1.0.71
[INFO] [stderr]    Compiling regex v1.5.4
[INFO] [stderr]    Compiling url v2.2.2
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling rand v0.8.4
[INFO] [stderr]    Compiling cmake v0.1.45
[INFO] [stderr]    Compiling libz-sys v1.1.3
[INFO] [stderr]    Compiling bzip2-sys v0.1.11+1.0.8
[INFO] [stderr]    Compiling lzma-sys v0.1.17
[INFO] [stderr]    Compiling libdeflate-sys v0.5.0
[INFO] [stderr]    Compiling backtrace v0.3.61
[INFO] [stderr]    Compiling lz4-sys v1.9.2
[INFO] [stderr]    Compiling hts-sys v2.0.2
[INFO] [stderr]    Compiling tempfile v3.2.0
[INFO] [stderr]    Compiling thiserror-impl v1.0.29
[INFO] [stderr]    Compiling strum_macros v0.20.1
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling thiserror v1.0.29
[INFO] [stderr]    Compiling bio-types v0.12.0
[INFO] [stderr]    Compiling lz4 v1.23.2
[INFO] [stderr]    Compiling flate2 v1.0.22
[INFO] [stderr]    Compiling bstr v0.2.17
[INFO] [stderr]    Compiling bincode v1.3.3
[INFO] [stderr]    Compiling serde_bytes v0.11.5
[INFO] [stderr]    Compiling docopt v1.1.1
[INFO] [stderr]    Compiling shardio v0.8.1
[INFO] [stderr]    Compiling csv v1.1.6
[INFO] [stderr]    Compiling rust-htslib v0.38.2
[INFO] [stderr]    Compiling bamtofastq v1.4.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [optimized + debuginfo] target(s) in 50.80s
[INFO] running `Command { std: "docker" "inspect" "4ecbec50fc20c7eb7ec52dac45008f3ba6a5e3e7fd897278ce91c0145273b0db", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "4ecbec50fc20c7eb7ec52dac45008f3ba6a5e3e7fd897278ce91c0145273b0db", kill_on_drop: false }`
[INFO] [stdout] 4ecbec50fc20c7eb7ec52dac45008f3ba6a5e3e7fd897278ce91c0145273b0db
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-74/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-74/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+a77da2d454e6caa227a85b16410b95f93495e7e0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] e63cf613a0e372e4d7d0f60fb591b2b376ccaaf56fe9ff1e593089d2fd26c930
[INFO] running `Command { std: "docker" "start" "-a" "e63cf613a0e372e4d7d0f60fb591b2b376ccaaf56fe9ff1e593089d2fd26c930", kill_on_drop: false }`
[INFO] [stderr]    Compiling bamtofastq v1.4.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished test [optimized + debuginfo] target(s) in 16.50s
[INFO] running `Command { std: "docker" "inspect" "e63cf613a0e372e4d7d0f60fb591b2b376ccaaf56fe9ff1e593089d2fd26c930", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "e63cf613a0e372e4d7d0f60fb591b2b376ccaaf56fe9ff1e593089d2fd26c930", kill_on_drop: false }`
[INFO] [stdout] e63cf613a0e372e4d7d0f60fb591b2b376ccaaf56fe9ff1e593089d2fd26c930
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-74/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-74/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+a77da2d454e6caa227a85b16410b95f93495e7e0" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] be0e4138c1eae7c5df3cab0089ceffd8daeaff638085888aa271e84e26c69f50
[INFO] running `Command { std: "docker" "start" "-a" "be0e4138c1eae7c5df3cab0089ceffd8daeaff638085888aa271e84e26c69f50", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Finished test [optimized + debuginfo] target(s) in 3.14s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/bamtofastq-3ecbe44c04229c12)
[INFO] [stdout] running 7 tests
[INFO] [stdout] test tests::bad_bam ... ok
[INFO] [stdout] test tests::wrong_header ... ok
[INFO] [stdout] test tests::unpaired_record ... ok
[INFO] [stdout] test tests::test_cr12 ... ok
[INFO] [stdout] test tests::test_cr12_v1 ... ok
[INFO] [stdout] test tests::test_lr20 ... ok
[INFO] [stdout] test tests::test_lr21 ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 7 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 1.11s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "be0e4138c1eae7c5df3cab0089ceffd8daeaff638085888aa271e84e26c69f50", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "be0e4138c1eae7c5df3cab0089ceffd8daeaff638085888aa271e84e26c69f50", kill_on_drop: false }`
[INFO] [stdout] be0e4138c1eae7c5df3cab0089ceffd8daeaff638085888aa271e84e26c69f50