[INFO] fetching crate rust-bio-tools 0.31.0...
[INFO] testing rust-bio-tools-0.31.0 against try#8262275854dc0e5381c9d42d56257d94932c5a87 for pr-90799
[INFO] extracting crate rust-bio-tools 0.31.0 into /workspace/builds/worker-2/source
[INFO] validating manifest of crates.io crate rust-bio-tools 0.31.0 on toolchain 8262275854dc0e5381c9d42d56257d94932c5a87
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+8262275854dc0e5381c9d42d56257d94932c5a87" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] removed /workspace/builds/worker-2/source/.cargo/config
[INFO] started tweaking crates.io crate rust-bio-tools 0.31.0
[INFO] finished tweaking crates.io crate rust-bio-tools 0.31.0
[INFO] tweaked toml for crates.io crate rust-bio-tools 0.31.0 written to /workspace/builds/worker-2/source/Cargo.toml
[INFO] crate crates.io crate rust-bio-tools 0.31.0 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+8262275854dc0e5381c9d42d56257d94932c5a87" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded rocksdb v0.17.0
[INFO] [stderr]   Downloaded c_vec v1.0.12
[INFO] [stderr]   Downloaded array-macro v1.0.5
[INFO] [stderr]   Downloaded unic-segment v0.9.0
[INFO] [stderr]   Downloaded enum-map-derive v0.4.6
[INFO] [stderr]   Downloaded enum-map v0.6.4
[INFO] [stderr]   Downloaded streaming-stats v0.2.3
[INFO] [stderr]   Downloaded globwalk v0.8.1
[INFO] [stderr]   Downloaded statrs v0.12.0
[INFO] [stderr]   Downloaded triple_accel v0.3.4
[INFO] [stderr]   Downloaded bio v0.32.0
[INFO] [stderr]   Downloaded lz-str v0.1.0
[INFO] [stderr]   Downloaded rust-htslib v0.38.2
[INFO] [stderr]   Downloaded GSL v1.1.0
[INFO] [stderr]   Downloaded fern v0.5.9
[INFO] [stderr]   Downloaded serde_json v1.0.70
[INFO] [stderr]   Downloaded libxlsxwriter-sys v1.1.1
[INFO] [stderr]   Downloaded tera v1.15.0
[INFO] [stderr]   Downloaded unic-ucd-segment v0.9.0
[INFO] [stderr]   Downloaded jsonm v0.1.4
[INFO] [stderr]   Downloaded librocksdb-sys v6.20.3
[INFO] [stderr]   Downloaded bio-types v0.12.0
[INFO] [stderr]   Downloaded xlsxwriter v0.3.5
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+8262275854dc0e5381c9d42d56257d94932c5a87" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] ae2fa862aebf31172e5f3bbf25a4301d0b9e8e52d6adf0e640e767c7156e839d
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "ae2fa862aebf31172e5f3bbf25a4301d0b9e8e52d6adf0e640e767c7156e839d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "ae2fa862aebf31172e5f3bbf25a4301d0b9e8e52d6adf0e640e767c7156e839d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "ae2fa862aebf31172e5f3bbf25a4301d0b9e8e52d6adf0e640e767c7156e839d", kill_on_drop: false }`
[INFO] [stdout] ae2fa862aebf31172e5f3bbf25a4301d0b9e8e52d6adf0e640e767c7156e839d
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+8262275854dc0e5381c9d42d56257d94932c5a87" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 62ed061f63c771ccf3cce9275b308b08b294f07ce27f30b078c1e2eddb65337a
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "62ed061f63c771ccf3cce9275b308b08b294f07ce27f30b078c1e2eddb65337a", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]    Compiling autocfg v1.0.1
[INFO] [stderr]    Compiling cfg-if v1.0.0
[INFO] [stderr]    Compiling proc-macro2 v1.0.32
[INFO] [stderr]    Compiling unicode-xid v0.2.2
[INFO] [stderr]    Compiling syn v1.0.81
[INFO] [stderr]    Compiling version_check v0.9.3
[INFO] [stderr]    Compiling lazy_static v1.4.0
[INFO] [stderr]    Compiling memchr v2.3.4
[INFO] [stderr]    Compiling serde_derive v1.0.130
[INFO] [stderr]    Compiling serde v1.0.130
[INFO] [stderr]    Compiling cfg-if v0.1.10
[INFO] [stderr]    Compiling glob v0.3.0
[INFO] [stderr]    Compiling bitflags v1.3.2
[INFO] [stderr]    Compiling scopeguard v1.1.0
[INFO] [stderr]    Compiling futures v0.1.31
[INFO] [stderr]    Compiling byteorder v1.4.3
[INFO] [stderr]    Compiling either v1.6.1
[INFO] [stderr]    Compiling semver-parser v0.7.0
[INFO] [stderr]    Compiling fnv v1.0.7
[INFO] [stderr]    Compiling maybe-uninit v2.0.0
[INFO] [stderr]    Compiling ppv-lite86 v0.2.15
[INFO] [stderr]    Compiling itoa v0.4.8
[INFO] [stderr]    Compiling autocfg v0.1.7
[INFO] [stderr]    Compiling rand_core v0.4.2
[INFO] [stderr]    Compiling peeking_take_while v0.1.2
[INFO] [stderr]    Compiling radium v0.5.3
[INFO] [stderr]    Compiling unicode-width v0.1.9
[INFO] [stderr]    Compiling crossbeam-utils v0.8.5
[INFO] [stderr]    Compiling shlex v1.1.0
[INFO] [stderr]    Compiling lazycell v1.3.0
[INFO] [stderr]    Compiling rustc-hash v1.1.0
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[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling bindgen v0.59.1
[INFO] [stderr]    Compiling gimli v0.24.0
[INFO] [stderr]    Compiling percent-encoding v1.0.1
[INFO] [stderr]    Compiling ucd-trie v0.1.3
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[INFO] [stderr]    Compiling native-tls v0.2.8
[INFO] [stderr]    Compiling rayon-core v1.9.1
[INFO] [stderr]    Compiling object v0.24.0
[INFO] [stderr]    Compiling ndarray v0.13.1
[INFO] [stderr]    Compiling void v1.0.2
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling deunicode v0.4.3
[INFO] [stderr]    Compiling anyhow v1.0.45
[INFO] [stderr]    Compiling dtoa v0.4.8
[INFO] [stderr]    Compiling bio v0.32.0
[INFO] [stderr]    Compiling array-macro v1.0.5
[INFO] [stderr]    Compiling remove_dir_all v0.5.3
[INFO] [stderr]    Compiling ieee754 v0.2.6
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[INFO] [stderr]    Compiling humansize v1.1.1
[INFO] [stderr]    Compiling c_vec v1.0.12
[INFO] [stderr]    Compiling bytecount v0.6.2
[INFO] [stderr]    Compiling triple_accel v0.3.4
[INFO] [stderr]    Compiling lz-str v0.1.0
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[INFO] [stderr]    Compiling fxhash v0.2.1
[INFO] [stderr]    Compiling base64 v0.10.1
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[INFO] [stderr]    Compiling textwrap v0.11.0
[INFO] [stderr]    Compiling thread_local v1.1.3
[INFO] [stderr]    Compiling num-traits v0.2.14
[INFO] [stderr]    Compiling crossbeam-utils v0.7.2
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[INFO] [stderr]    Compiling nom v6.2.1
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[INFO] [stderr]    Compiling crossbeam-epoch v0.8.2
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[INFO] [stderr]    Compiling unicase v2.6.0
[INFO] [stderr]    Compiling memoffset v0.6.4
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]    Compiling num-complex v0.2.4
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling rayon v1.5.1
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[INFO] [stderr]    Compiling rand_chacha v0.1.1
[INFO] [stderr]    Compiling rand_pcg v0.1.2
[INFO] [stderr]    Compiling rand v0.6.5
[INFO] [stderr]    Compiling clang-sys v1.3.0
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling tokio-sync v0.1.8
[INFO] [stderr]    Compiling foreign-types v0.3.2
[INFO] [stderr]    Compiling pest v2.1.3
[INFO] [stderr]    Compiling walkdir v2.3.2
[INFO] [stderr]    Compiling unic-char-property v0.9.0
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[INFO] [stderr]    Compiling log v0.4.14
[INFO] [stderr]    Compiling unicode-normalization v0.1.19
[INFO] [stderr]    Compiling rustc_version v0.2.3
[INFO] [stderr]    Compiling rand_hc v0.1.0
[INFO] [stderr]    Compiling rand_xorshift v0.1.1
[INFO] [stderr]    Compiling rand_isaac v0.1.1
[INFO] [stderr]    Compiling crc32fast v1.2.1
[INFO] [stderr]    Compiling encoding_rs v0.8.29
[INFO] [stderr]    Compiling jobserver v0.1.24
[INFO] [stderr]    Compiling iovec v0.1.4
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[INFO] [stderr]    Compiling time v0.1.43
[INFO] [stderr]    Compiling net2 v0.2.37
[INFO] [stderr]    Compiling which v3.1.1
[INFO] [stderr]    Compiling rand_os v0.1.3
[INFO] [stderr]    Compiling terminal_size v0.1.17
[INFO] [stderr]    Compiling parking_lot_core v0.8.5
[INFO] [stderr]    Compiling unic-ucd-segment v0.9.0
[INFO] [stderr]    Compiling want v0.2.0
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling smallvec v0.6.14
[INFO] [stderr]    Compiling aho-corasick v0.7.15
[INFO] [stderr]    Compiling csv-core v0.1.10
[INFO] [stderr]    Compiling parking_lot_core v0.6.2
[INFO] [stderr]    Compiling parking_lot v0.9.0
[INFO] [stderr]    Compiling hyper v0.12.36
[INFO] [stderr]    Compiling bitvec v0.19.5
[INFO] [stderr]    Compiling futures-cpupool v0.1.8
[INFO] [stderr]    Compiling bytes v0.4.12
[INFO] [stderr]    Compiling crossbeam-channel v0.5.1
[INFO] [stderr]    Compiling pest_meta v2.1.3
[INFO] [stderr]    Compiling quote v1.0.10
[INFO] [stderr]    Compiling addr2line v0.15.2
[INFO] [stderr]    Compiling rand_core v0.6.3
[INFO] [stderr]    Compiling cc v1.0.72
[INFO] [stderr]    Compiling rand_core v0.5.1
[INFO] [stderr]    Compiling mio v0.6.23
[INFO] [stderr]    Compiling idna v0.1.5
[INFO] [stderr]    Compiling idna v0.2.3
[INFO] [stderr]    Compiling parking_lot v0.11.2
[INFO] [stderr]    Compiling phf_shared v0.10.0
[INFO] [stderr]    Compiling unic-segment v0.9.0
[INFO] [stderr]    Compiling tokio-executor v0.1.10
[INFO] [stderr]    Compiling crossbeam-queue v0.2.3
[INFO] [stderr]    Compiling mime_guess v2.0.3
[INFO] [stderr]    Compiling flate2 v1.0.22
[INFO] [stderr]    Compiling petgraph v0.5.1
[INFO] [stderr]    Compiling regex v1.4.6
[INFO] [stderr]    Compiling tokio-io v0.1.13
[INFO] [stderr]    Compiling http v0.1.21
[INFO] [stderr]    Compiling string v0.2.1
[INFO] [stderr]    Compiling tokio-buf v0.1.1
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling rand_chacha v0.2.2
[INFO] [stderr]    Compiling num-traits v0.1.43
[INFO] [stderr]    Compiling approx v0.3.2
[INFO] [stderr]    Compiling ordered-float v1.1.1
[INFO] [stderr]    Compiling itertools-num v0.1.3
[INFO] [stderr]    Compiling number_prefix v0.2.8
[INFO] [stderr]    Compiling approx v0.4.0
[INFO] [stderr]    Compiling streaming-stats v0.2.3
[INFO] [stderr]    Compiling phf v0.10.0
[INFO] [stderr]    Compiling openssl-src v300.0.2+3.0.0
[INFO] [stderr]    Compiling cmake v0.1.46
[INFO] [stderr]    Compiling tokio-current-thread v0.1.7
[INFO] [stderr]    Compiling tokio-timer v0.2.13
[INFO] [stderr]    Compiling url v2.2.2
[INFO] [stderr]    Compiling crossbeam-deque v0.8.1
[INFO] [stderr]    Compiling url v1.7.2
[INFO] [stderr]    Compiling crossbeam-deque v0.7.4
[INFO] [stderr]    Compiling cexpr v0.4.0
[INFO] [stderr]    Compiling rand v0.7.3
[INFO] [stderr]    Compiling rand v0.8.4
[INFO] [stderr]    Compiling curl-sys v0.4.50+curl-7.79.1
[INFO] [stderr]    Compiling lzma-sys v0.1.17
[INFO] [stderr]    Compiling bzip2-sys v0.1.11+1.0.8
[INFO] [stderr]    Compiling backtrace v0.3.59
[INFO] [stderr]    Compiling hts-sys v2.0.2
[INFO] [stderr]    Compiling ordered-float v0.5.2
[INFO] [stderr]    Compiling chrono v0.4.19
[INFO] [stderr]    Compiling env_logger v0.8.4
[INFO] [stderr]    Compiling parse-zoneinfo v0.3.0
[INFO] [stderr]    Compiling console v0.15.0
[INFO] [stderr]    Compiling uuid v0.7.4
[INFO] [stderr]    Compiling openssl-sys v0.9.70
[INFO] [stderr]    Compiling tokio-threadpool v0.1.18
[INFO] [stderr]    Compiling publicsuffix v1.5.6
[INFO] [stderr]    Compiling libz-sys v1.1.3
[INFO] [stderr]    Compiling cookie v0.12.0
[INFO] [stderr]    Compiling h2 v0.1.26
[INFO] [stderr]    Compiling http-body v0.1.0
[INFO] [stderr]    Compiling tokio-reactor v0.1.12
[INFO] [stderr]    Compiling phf_generator v0.10.0
[INFO] [stderr]    Compiling tempfile v3.2.0
[INFO] [stderr]    Compiling statrs v0.12.0
[INFO] [stderr]    Compiling indicatif v0.11.0
[INFO] [stderr]    Compiling fern v0.5.9
[INFO] [stderr]    Compiling phf_codegen v0.10.0
[INFO] [stderr]    Compiling tokio-tcp v0.1.4
[INFO] [stderr]    Compiling cexpr v0.5.0
[INFO] [stderr]    Compiling synstructure v0.12.6
[INFO] [stderr]    Compiling pest_generator v2.1.3
[INFO] [stderr]    Compiling chrono-tz-build v0.0.2
[INFO] [stderr]    Compiling tokio v0.1.22
[INFO] [stderr]    Compiling chrono-tz v0.6.0
[INFO] [stderr]    Compiling thiserror-impl v1.0.30
[INFO] [stderr]    Compiling strum_macros v0.20.1
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling failure_derive v0.1.8
[INFO] [stderr]    Compiling enum-map-derive v0.4.6
[INFO] [stderr]    Compiling snafu-derive v0.6.10
[INFO] [stderr]    Compiling getset v0.0.9
[INFO] [stderr]    Compiling strum_macros v0.18.0
[INFO] [stderr]    Compiling pest_derive v2.1.0
[INFO] [stderr]    Compiling structopt-derive v0.4.18
[INFO] [stderr] error: could not compile `bindgen`
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `rustc --crate-name bindgen --edition=2018 /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/bindgen-0.59.1/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no -C debuginfo=2 --cfg 'feature="runtime"' -C metadata=74b22439e666ef80 -C extra-filename=-74b22439e666ef80 --out-dir /opt/rustwide/target/debug/deps -L dependency=/opt/rustwide/target/debug/deps --extern bitflags=/opt/rustwide/target/debug/deps/libbitflags-05dfd5b5d1225bed.rmeta --extern cexpr=/opt/rustwide/target/debug/deps/libcexpr-8de10590c835e573.rmeta --extern clang_sys=/opt/rustwide/target/debug/deps/libclang_sys-545b71bb20651f01.rmeta --extern lazy_static=/opt/rustwide/target/debug/deps/liblazy_static-b33cd6b8ee13db74.rmeta --extern lazycell=/opt/rustwide/target/debug/deps/liblazycell-d2ae0c144988a8f0.rmeta --extern peeking_take_while=/opt/rustwide/target/debug/deps/libpeeking_take_while-321cc037074b2330.rmeta --extern proc_macro2=/opt/rustwide/target/debug/deps/libproc_macro2-9dbaaf035d6d15d1.rmeta --extern quote=/opt/rustwide/target/debug/deps/libquote-0bcba2a61b67309f.rmeta --extern regex=/opt/rustwide/target/debug/deps/libregex-f44b15021412c1c7.rmeta --extern rustc_hash=/opt/rustwide/target/debug/deps/librustc_hash-91c665a5e97266ba.rmeta --extern shlex=/opt/rustwide/target/debug/deps/libshlex-df061bad8be1d243.rmeta --cap-lints allow --cap-lints=forbid` (signal: 9, SIGKILL: kill)
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] [stderr] error: build failed
[INFO] running `Command { std: "docker" "inspect" "62ed061f63c771ccf3cce9275b308b08b294f07ce27f30b078c1e2eddb65337a", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "62ed061f63c771ccf3cce9275b308b08b294f07ce27f30b078c1e2eddb65337a", kill_on_drop: false }`
[INFO] [stdout] 62ed061f63c771ccf3cce9275b308b08b294f07ce27f30b078c1e2eddb65337a