[INFO] fetching crate omics-tools 0.1.0... [INFO] testing omics-tools-0.1.0 against try#8262275854dc0e5381c9d42d56257d94932c5a87 for pr-90799 [INFO] extracting crate omics-tools 0.1.0 into /workspace/builds/worker-58/source [INFO] validating manifest of crates.io crate omics-tools 0.1.0 on toolchain 8262275854dc0e5381c9d42d56257d94932c5a87 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+8262275854dc0e5381c9d42d56257d94932c5a87" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate omics-tools 0.1.0 [INFO] finished tweaking crates.io crate omics-tools 0.1.0 [INFO] tweaked toml for crates.io crate omics-tools 0.1.0 written to /workspace/builds/worker-58/source/Cargo.toml [INFO] crate crates.io crate omics-tools 0.1.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+8262275854dc0e5381c9d42d56257d94932c5a87" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-58/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-58/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e8397a04204aaf8b9f284182a6f9e27a3c2e67044d0943b4415b160bfc957681" "/opt/rustwide/cargo-home/bin/cargo" "+8262275854dc0e5381c9d42d56257d94932c5a87" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 8fdf463655a9e9a1a5942ce47cb6918e6b1148cef31f191bb82995b0675568ee [INFO] running `Command { std: "docker" "start" "-a" "8fdf463655a9e9a1a5942ce47cb6918e6b1148cef31f191bb82995b0675568ee", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "8fdf463655a9e9a1a5942ce47cb6918e6b1148cef31f191bb82995b0675568ee", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "8fdf463655a9e9a1a5942ce47cb6918e6b1148cef31f191bb82995b0675568ee", kill_on_drop: false }` [INFO] [stdout] 8fdf463655a9e9a1a5942ce47cb6918e6b1148cef31f191bb82995b0675568ee [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-58/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-58/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e8397a04204aaf8b9f284182a6f9e27a3c2e67044d0943b4415b160bfc957681" "/opt/rustwide/cargo-home/bin/cargo" "+8262275854dc0e5381c9d42d56257d94932c5a87" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] f7bb5bac6d279b650f6e34977242cbc979151195c296ebd2feef746f5c082e6f [INFO] running `Command { std: "docker" "start" "-a" "f7bb5bac6d279b650f6e34977242cbc979151195c296ebd2feef746f5c082e6f", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.77 [INFO] [stderr] Compiling autocfg v1.0.1 [INFO] [stderr] Compiling pkg-config v0.3.18 [INFO] [stderr] Compiling proc-macro2 v1.0.21 [INFO] [stderr] Compiling unicode-xid v0.2.1 [INFO] [stderr] Compiling syn v1.0.40 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling cfg-if v0.1.10 [INFO] [stderr] Compiling version_check v0.9.2 [INFO] [stderr] Compiling maybe-uninit v2.0.0 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling memchr v2.3.3 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling matches v0.1.8 [INFO] [stderr] Compiling tinyvec v0.3.4 [INFO] [stderr] Compiling serde_derive v1.0.116 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling rayon-core v1.8.0 [INFO] [stderr] Compiling scopeguard v1.1.0 [INFO] [stderr] Compiling serde v1.0.116 [INFO] [stderr] Compiling unicode-segmentation v1.6.0 [INFO] [stderr] Compiling regex-syntax v0.6.18 [INFO] [stderr] Compiling log v0.4.11 [INFO] [stderr] Compiling strsim v0.8.0 [INFO] [stderr] Compiling percent-encoding v2.1.0 [INFO] [stderr] Compiling ansi_term v0.11.0 [INFO] [stderr] Compiling lazy_static v0.2.11 [INFO] [stderr] Compiling ieee754 v0.2.6 [INFO] [stderr] Compiling either v1.6.0 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling linear-map v1.2.0 [INFO] [stderr] Compiling termcolor v1.1.0 [INFO] [stderr] Compiling exitcode v1.1.2 [INFO] [stderr] Compiling unreachable v1.0.0 [INFO] [stderr] Compiling unicode-bidi v0.3.4 [INFO] [stderr] Compiling fs-utils v1.1.4 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling thread_local v1.0.1 [INFO] [stderr] Compiling unicode-normalization v0.1.13 [INFO] [stderr] Compiling thread_local v0.3.4 [INFO] [stderr] Compiling proc-macro-error-attr v1.0.4 [INFO] [stderr] Compiling proc-macro-error v1.0.4 [INFO] [stderr] Compiling heck v0.3.1 [INFO] [stderr] Compiling crossbeam-utils v0.7.2 [INFO] [stderr] Compiling memoffset v0.5.5 [INFO] [stderr] Compiling num-traits v0.2.12 [INFO] [stderr] Compiling crossbeam-epoch v0.8.2 [INFO] [stderr] Compiling num-integer v0.1.43 [INFO] [stderr] Compiling rayon v1.4.0 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling aho-corasick v0.7.13 [INFO] [stderr] Compiling quote v1.0.7 [INFO] [stderr] Compiling idna v0.2.0 [INFO] [stderr] Compiling jobserver v0.1.21 [INFO] [stderr] Compiling atty v0.2.11 [INFO] [stderr] Compiling num_cpus v1.13.0 [INFO] [stderr] Compiling time v0.1.44 [INFO] [stderr] Compiling clap v2.33.3 [INFO] [stderr] Compiling cc v1.0.59 [INFO] [stderr] Compiling url v2.1.1 [INFO] [stderr] Compiling crossbeam-channel v0.4.4 [INFO] [stderr] Compiling chrono v0.4.15 [INFO] [stderr] Compiling crossbeam-deque v0.7.3 [INFO] [stderr] Compiling openssl-src v111.10.2+1.1.1g [INFO] [stderr] Compiling regex v1.3.9 [INFO] [stderr] Compiling openssl-sys v0.9.58 [INFO] [stderr] Compiling libz-sys v1.1.2 [INFO] [stderr] Compiling lzma-sys v0.1.16 [INFO] [stderr] Compiling curl-sys v0.4.36+curl-7.71.1 [INFO] [stderr] Compiling bzip2-sys v0.1.9+1.0.8 [INFO] [stderr] Compiling hts-sys v1.10.3 [INFO] [stderr] Compiling stderrlog v0.4.3 [INFO] [stderr] Compiling thiserror-impl v1.0.20 [INFO] [stderr] Compiling derive-new v0.5.8 [INFO] [stderr] Compiling structopt-derive v0.4.10 [INFO] [stderr] Compiling thiserror v1.0.20 [INFO] [stderr] Compiling structopt v0.3.17 [INFO] [stderr] Compiling bio-types v0.7.0 [INFO] [stderr] Compiling rust-htslib v0.32.0 [INFO] [stderr] Compiling omics-tools v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused `#[macro_use]` import [INFO] [stdout] --> src/bin/bam-util.rs:1:1 [INFO] [stdout] | [INFO] [stdout] 1 | #[macro_use] [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `quiet` [INFO] [stdout] --> src/bin/bam-util.rs:15:3 [INFO] [stdout] | [INFO] [stdout] 15 | quiet: bool, [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `verbose` [INFO] [stdout] --> src/bin/bam-util.rs:16:3 [INFO] [stdout] | [INFO] [stdout] 16 | verbose: usize, [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `ts` [INFO] [stdout] --> src/bin/bam-util.rs:17:3 [INFO] [stdout] | [INFO] [stdout] 17 | ts: Option, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 4 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 30.16s [INFO] running `Command { std: "docker" "inspect" "f7bb5bac6d279b650f6e34977242cbc979151195c296ebd2feef746f5c082e6f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f7bb5bac6d279b650f6e34977242cbc979151195c296ebd2feef746f5c082e6f", kill_on_drop: false }` [INFO] [stdout] f7bb5bac6d279b650f6e34977242cbc979151195c296ebd2feef746f5c082e6f [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-58/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-58/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e8397a04204aaf8b9f284182a6f9e27a3c2e67044d0943b4415b160bfc957681" "/opt/rustwide/cargo-home/bin/cargo" "+8262275854dc0e5381c9d42d56257d94932c5a87" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 4002d24aadcb0b4ef97259736320cd6e1964a79adf0102f2aba5cbf4ac795c34 [INFO] running `Command { std: "docker" "start" "-a" "4002d24aadcb0b4ef97259736320cd6e1964a79adf0102f2aba5cbf4ac795c34", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling omics-tools v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused `#[macro_use]` import [INFO] [stdout] --> src/bin/bam-util.rs:1:1 [INFO] [stdout] | [INFO] [stdout] 1 | #[macro_use] [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `quiet` [INFO] [stdout] --> src/bin/bam-util.rs:15:3 [INFO] [stdout] | [INFO] [stdout] 15 | quiet: bool, [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `verbose` [INFO] [stdout] --> src/bin/bam-util.rs:16:3 [INFO] [stdout] | [INFO] [stdout] 16 | verbose: usize, [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `ts` [INFO] [stdout] --> src/bin/bam-util.rs:17:3 [INFO] [stdout] | [INFO] [stdout] 17 | ts: Option, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 4 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 2.69s [INFO] running `Command { std: "docker" "inspect" "4002d24aadcb0b4ef97259736320cd6e1964a79adf0102f2aba5cbf4ac795c34", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "4002d24aadcb0b4ef97259736320cd6e1964a79adf0102f2aba5cbf4ac795c34", kill_on_drop: false }` [INFO] [stdout] 4002d24aadcb0b4ef97259736320cd6e1964a79adf0102f2aba5cbf4ac795c34 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-58/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-58/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e8397a04204aaf8b9f284182a6f9e27a3c2e67044d0943b4415b160bfc957681" "/opt/rustwide/cargo-home/bin/cargo" "+8262275854dc0e5381c9d42d56257d94932c5a87" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 7e175107baadc38cef2f2d6420fa4c781e414c7ec12dcaf0aa8e52954fd7210d [INFO] running `Command { std: "docker" "start" "-a" "7e175107baadc38cef2f2d6420fa4c781e414c7ec12dcaf0aa8e52954fd7210d", kill_on_drop: false }` [INFO] [stderr] warning: unused `#[macro_use]` import [INFO] [stderr] --> src/bin/bam-util.rs:1:1 [INFO] [stderr] | [INFO] [stderr] 1 | #[macro_use] [INFO] [stderr] | ^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` on by default [INFO] [stderr] [INFO] [stderr] warning: field is never read: `quiet` [INFO] [stderr] --> src/bin/bam-util.rs:15:3 [INFO] [stderr] | [INFO] [stderr] 15 | quiet: bool, [INFO] [stderr] | ^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(dead_code)]` on by default [INFO] [stderr] [INFO] [stderr] warning: field is never read: `verbose` [INFO] [stderr] --> src/bin/bam-util.rs:16:3 [INFO] [stderr] | [INFO] [stderr] 16 | verbose: usize, [INFO] [stderr] | ^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: field is never read: `ts` [INFO] [stderr] --> src/bin/bam-util.rs:17:3 [INFO] [stderr] | [INFO] [stderr] 17 | ts: Option, [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: `omics-tools` (bin "bam-util" test) generated 4 warnings [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.37s [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/omics_tools-5feddf2d3b2e636b) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/bam_util-bc1ded65b9bae40a) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Doc-tests omics-tools [INFO] [stdout] [INFO] [stdout] running 1 test [INFO] [stdout] test src/bam/cigar.rs - bam::cigar::remove_whitespace (line 21) ... FAILED [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] [INFO] [stdout] ---- src/bam/cigar.rs - bam::cigar::remove_whitespace (line 21) stdout ---- [INFO] [stdout] error[E0425]: cannot find function `remove_whitespace` in this scope [INFO] [stdout] --> src/bam/cigar.rs:22:15 [INFO] [stdout] | [INFO] [stdout] 3 | let removed = remove_whitespace(" each(S) && all(M)"); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ not found in this scope [INFO] [stdout] | [INFO] [stdout] help: consider importing this function [INFO] [stdout] | [INFO] [stdout] 2 | use omics_tools::bam::cigar::remove_whitespace; [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] error: aborting due to previous error [INFO] [stdout] [INFO] [stdout] For more information about this error, try `rustc --explain E0425`. [INFO] [stdout] Couldn't compile the test. [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] src/bam/cigar.rs - bam::cigar::remove_whitespace (line 21) [INFO] [stdout] [INFO] [stdout] test result: FAILED. 0 passed; 1 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.18s [INFO] [stdout] [INFO] [stderr] error: test failed, to rerun pass '--doc' [INFO] running `Command { std: "docker" "inspect" "7e175107baadc38cef2f2d6420fa4c781e414c7ec12dcaf0aa8e52954fd7210d", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "7e175107baadc38cef2f2d6420fa4c781e414c7ec12dcaf0aa8e52954fd7210d", kill_on_drop: false }` [INFO] [stdout] 7e175107baadc38cef2f2d6420fa4c781e414c7ec12dcaf0aa8e52954fd7210d