[INFO] fetching crate netcdf 0.6.1... [INFO] testing netcdf-0.6.1 against try#8262275854dc0e5381c9d42d56257d94932c5a87 for pr-90799 [INFO] extracting crate netcdf 0.6.1 into /workspace/builds/worker-2/source [INFO] validating manifest of crates.io crate netcdf 0.6.1 on toolchain 8262275854dc0e5381c9d42d56257d94932c5a87 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+8262275854dc0e5381c9d42d56257d94932c5a87" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate netcdf 0.6.1 [INFO] finished tweaking crates.io crate netcdf 0.6.1 [INFO] tweaked toml for crates.io crate netcdf 0.6.1 written to /workspace/builds/worker-2/source/Cargo.toml [INFO] crate crates.io crate netcdf 0.6.1 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+8262275854dc0e5381c9d42d56257d94932c5a87" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded thread_local v1.1.2 [INFO] [stderr] Downloaded libc v0.2.84 [INFO] [stderr] Downloaded libz-sys v1.1.2 [INFO] [stderr] Downloaded netcdf-sys v0.3.4 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+8262275854dc0e5381c9d42d56257d94932c5a87" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] e3227372834fd8b5b92148083e2da8648f1ab626f2950307c36e850b2133572e [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "e3227372834fd8b5b92148083e2da8648f1ab626f2950307c36e850b2133572e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "e3227372834fd8b5b92148083e2da8648f1ab626f2950307c36e850b2133572e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "e3227372834fd8b5b92148083e2da8648f1ab626f2950307c36e850b2133572e", kill_on_drop: false }` [INFO] [stdout] e3227372834fd8b5b92148083e2da8648f1ab626f2950307c36e850b2133572e [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+8262275854dc0e5381c9d42d56257d94932c5a87" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] c7fdc38aa8a482bac40c3e3c2eb93389c956021fb5972cdb187fb9538c9d2e8f [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "c7fdc38aa8a482bac40c3e3c2eb93389c956021fb5972cdb187fb9538c9d2e8f", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.84 [INFO] [stderr] Compiling rawpointer v0.2.1 [INFO] [stderr] Compiling netcdf-sys v0.3.4 [INFO] [stderr] Compiling num-integer v0.1.44 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling thread_local v1.1.2 [INFO] [stderr] Compiling libloading v0.6.7 [INFO] [stderr] Compiling libz-sys v1.1.2 [INFO] [stderr] Compiling matrixmultiply v0.2.4 [INFO] [stderr] Compiling regex v1.4.3 [INFO] [stderr] Compiling ndarray v0.13.1 [INFO] [stderr] Compiling hdf5-sys v0.7.1 [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.7.1` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-1b5021177b08d68b/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_NO_PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.1/build.rs:549:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x557fa57230dc - std::backtrace_rs::backtrace::libunwind::trace::h793e05efd273d0f4 [INFO] [stderr] at /rustc/8262275854dc0e5381c9d42d56257d94932c5a87/library/std/src/../../backtrace/src/backtrace/libunwind.rs:93:5 [INFO] [stderr] 1: 0x557fa57230dc - std::backtrace_rs::backtrace::trace_unsynchronized::h640b7b86ff610c77 [INFO] [stderr] at /rustc/8262275854dc0e5381c9d42d56257d94932c5a87/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x557fa57230dc - std::sys_common::backtrace::_print_fmt::h362fa2a4f354f877 [INFO] [stderr] at /rustc/8262275854dc0e5381c9d42d56257d94932c5a87/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x557fa57230dc - ::fmt::hf439e5ed84c74abd [INFO] [stderr] at /rustc/8262275854dc0e5381c9d42d56257d94932c5a87/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x557fa5741d6c - core::fmt::write::h72801a82c94e6ff1 [INFO] [stderr] at /rustc/8262275854dc0e5381c9d42d56257d94932c5a87/library/core/src/fmt/mod.rs:1149:17 [INFO] [stderr] 5: 0x557fa571f915 - std::io::Write::write_fmt::h5562a8b6da0f0339 [INFO] [stderr] at /rustc/8262275854dc0e5381c9d42d56257d94932c5a87/library/std/src/io/mod.rs:1697:15 [INFO] [stderr] 6: 0x557fa5724a50 - std::sys_common::backtrace::_print::hb29ddd998d02631c [INFO] [stderr] at /rustc/8262275854dc0e5381c9d42d56257d94932c5a87/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x557fa5724a50 - std::sys_common::backtrace::print::h81965e3d7c90fbb6 [INFO] [stderr] at /rustc/8262275854dc0e5381c9d42d56257d94932c5a87/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x557fa5724a50 - std::panicking::default_hook::{{closure}}::h84db205ab6674b38 [INFO] [stderr] at /rustc/8262275854dc0e5381c9d42d56257d94932c5a87/library/std/src/panicking.rs:211:50 [INFO] [stderr] 9: 0x557fa57245fb - std::panicking::default_hook::h1bf8bb4159936bca [INFO] [stderr] at /rustc/8262275854dc0e5381c9d42d56257d94932c5a87/library/std/src/panicking.rs:228:9 [INFO] [stderr] 10: 0x557fa5725104 - std::panicking::rust_panic_with_hook::hf8e86850fbbd03b1 [INFO] [stderr] at /rustc/8262275854dc0e5381c9d42d56257d94932c5a87/library/std/src/panicking.rs:606:17 [INFO] [stderr] 11: 0x557fa554a812 - std::panicking::begin_panic::{{closure}}::hf7e41de103f4cfc7 [INFO] [stderr] at /rustc/8262275854dc0e5381c9d42d56257d94932c5a87/library/std/src/panicking.rs:526:9 [INFO] [stderr] 12: 0x557fa554a4b9 - std::sys_common::backtrace::__rust_end_short_backtrace::h9f075565b3862ca4 [INFO] [stderr] at /rustc/8262275854dc0e5381c9d42d56257d94932c5a87/library/std/src/sys_common/backtrace.rs:139:18 [INFO] [stderr] 13: 0x557fa554a753 - std::panicking::begin_panic::h5c21ac8c7a6f0e49 [INFO] [stderr] at /rustc/8262275854dc0e5381c9d42d56257d94932c5a87/library/std/src/panicking.rs:525:12 [INFO] [stderr] 14: 0x557fa551a9d7 - build_script_build::LibrarySearcher::try_locate_hdf5_library::h94964d9f791dbd7e [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.1/build.rs:549:13 [INFO] [stderr] 15: 0x557fa551c177 - build_script_build::main::h564450c69066b955 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.1/build.rs:647:9 [INFO] [stderr] 16: 0x557fa5521a8b - core::ops::function::FnOnce::call_once::h6a58030495beaf48 [INFO] [stderr] at /rustc/8262275854dc0e5381c9d42d56257d94932c5a87/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 17: 0x557fa552828e - std::sys_common::backtrace::__rust_begin_short_backtrace::he464a567fa105789 [INFO] [stderr] at /rustc/8262275854dc0e5381c9d42d56257d94932c5a87/library/std/src/sys_common/backtrace.rs:123:18 [INFO] [stderr] 18: 0x557fa5528321 - std::rt::lang_start::{{closure}}::hd1374da3a03d146b [INFO] [stderr] at /rustc/8262275854dc0e5381c9d42d56257d94932c5a87/library/std/src/rt.rs:145:18 [INFO] [stderr] 19: 0x557fa5722921 - core::ops::function::impls:: for &F>::call_once::h42d3791e66d196c0 [INFO] [stderr] at /rustc/8262275854dc0e5381c9d42d56257d94932c5a87/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 20: 0x557fa5722921 - std::panicking::try::do_call::hc3bcb188e535517f [INFO] [stderr] at /rustc/8262275854dc0e5381c9d42d56257d94932c5a87/library/std/src/panicking.rs:406:40 [INFO] [stderr] 21: 0x557fa5722921 - std::panicking::try::hb1edf04d4a7097ab [INFO] [stderr] at /rustc/8262275854dc0e5381c9d42d56257d94932c5a87/library/std/src/panicking.rs:370:19 [INFO] [stderr] 22: 0x557fa5722921 - std::panic::catch_unwind::h75ed941ac0d36d57 [INFO] [stderr] at /rustc/8262275854dc0e5381c9d42d56257d94932c5a87/library/std/src/panic.rs:133:14 [INFO] [stderr] 23: 0x557fa5722921 - std::rt::lang_start_internal::{{closure}}::hc702b3389af4cbea [INFO] [stderr] at /rustc/8262275854dc0e5381c9d42d56257d94932c5a87/library/std/src/rt.rs:128:48 [INFO] [stderr] 24: 0x557fa5722921 - std::panicking::try::do_call::h53276a03c7fe2ebc [INFO] [stderr] at /rustc/8262275854dc0e5381c9d42d56257d94932c5a87/library/std/src/panicking.rs:406:40 [INFO] [stderr] 25: 0x557fa5722921 - std::panicking::try::ha9e37f45dc542517 [INFO] [stderr] at /rustc/8262275854dc0e5381c9d42d56257d94932c5a87/library/std/src/panicking.rs:370:19 [INFO] [stderr] 26: 0x557fa5722921 - std::panic::catch_unwind::h182647595766fee7 [INFO] [stderr] at /rustc/8262275854dc0e5381c9d42d56257d94932c5a87/library/std/src/panic.rs:133:14 [INFO] [stderr] 27: 0x557fa5722921 - std::rt::lang_start_internal::h571831ebdba142de [INFO] [stderr] at /rustc/8262275854dc0e5381c9d42d56257d94932c5a87/library/std/src/rt.rs:128:20 [INFO] [stderr] 28: 0x557fa55282f0 - std::rt::lang_start::he4ea14fc536f6d28 [INFO] [stderr] at /rustc/8262275854dc0e5381c9d42d56257d94932c5a87/library/std/src/rt.rs:144:17 [INFO] [stderr] 29: 0x557fa551d61c - main [INFO] [stderr] 30: 0x7f632a3690b3 - __libc_start_main [INFO] [stderr] 31: 0x557fa5515d9e - _start [INFO] [stderr] 32: 0x0 - [INFO] running `Command { std: "docker" "inspect" "c7fdc38aa8a482bac40c3e3c2eb93389c956021fb5972cdb187fb9538c9d2e8f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "c7fdc38aa8a482bac40c3e3c2eb93389c956021fb5972cdb187fb9538c9d2e8f", kill_on_drop: false }` [INFO] [stdout] c7fdc38aa8a482bac40c3e3c2eb93389c956021fb5972cdb187fb9538c9d2e8f