[INFO] fetching crate librna-sys 0.1.3... [INFO] testing librna-sys-0.1.3 against try#8262275854dc0e5381c9d42d56257d94932c5a87 for pr-90799 [INFO] extracting crate librna-sys 0.1.3 into /workspace/builds/worker-43/source [INFO] validating manifest of crates.io crate librna-sys 0.1.3 on toolchain 8262275854dc0e5381c9d42d56257d94932c5a87 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+8262275854dc0e5381c9d42d56257d94932c5a87" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate librna-sys 0.1.3 [INFO] removed 0 missing examples [INFO] finished tweaking crates.io crate librna-sys 0.1.3 [INFO] tweaked toml for crates.io crate librna-sys 0.1.3 written to /workspace/builds/worker-43/source/Cargo.toml [INFO] crate crates.io crate librna-sys 0.1.3 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+8262275854dc0e5381c9d42d56257d94932c5a87" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded ghost v0.1.2 [INFO] [stderr] Downloaded pyo3-macros-backend v0.13.2 [INFO] [stderr] Downloaded clang-sys v1.0.0 [INFO] [stderr] Downloaded indoc-impl v0.3.6 [INFO] [stderr] Downloaded inventory v0.1.10 [INFO] [stderr] Downloaded libloading v0.6.3 [INFO] [stderr] Downloaded pyo3-macros v0.13.2 [INFO] [stderr] Downloaded inventory-impl v0.1.10 [INFO] [stderr] Downloaded indoc v0.3.6 [INFO] [stderr] Downloaded pyo3 v0.13.2 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-43/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-43/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e8397a04204aaf8b9f284182a6f9e27a3c2e67044d0943b4415b160bfc957681" "/opt/rustwide/cargo-home/bin/cargo" "+8262275854dc0e5381c9d42d56257d94932c5a87" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 29ff926e56c193b23b3a905bead73efe741a228377cc0b48a98aea258c408dc0 [INFO] running `Command { std: "docker" "start" "-a" "29ff926e56c193b23b3a905bead73efe741a228377cc0b48a98aea258c408dc0", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "29ff926e56c193b23b3a905bead73efe741a228377cc0b48a98aea258c408dc0", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "29ff926e56c193b23b3a905bead73efe741a228377cc0b48a98aea258c408dc0", kill_on_drop: false }` [INFO] [stdout] 29ff926e56c193b23b3a905bead73efe741a228377cc0b48a98aea258c408dc0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-43/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-43/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e8397a04204aaf8b9f284182a6f9e27a3c2e67044d0943b4415b160bfc957681" "/opt/rustwide/cargo-home/bin/cargo" "+8262275854dc0e5381c9d42d56257d94932c5a87" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] d1858f4fba8644e5f4436d3e53edc29337ec8a8c7b640959264db8332ec0a92d [INFO] running `Command { std: "docker" "start" "-a" "d1858f4fba8644e5f4436d3e53edc29337ec8a8c7b640959264db8332ec0a92d", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling memchr v2.3.3 [INFO] [stderr] Compiling libc v0.2.76 [INFO] [stderr] Compiling glob v0.3.0 [INFO] [stderr] Compiling cfg-if v0.1.10 [INFO] [stderr] Compiling version_check v0.9.2 [INFO] [stderr] Compiling log v0.4.11 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling libloading v0.6.3 [INFO] [stderr] Compiling proc-macro2 v1.0.19 [INFO] [stderr] Compiling regex-syntax v0.6.18 [INFO] [stderr] Compiling unicode-width v0.1.8 [INFO] [stderr] Compiling unicode-xid v0.2.1 [INFO] [stderr] Compiling humantime v2.1.0 [INFO] [stderr] Compiling termcolor v1.1.0 [INFO] [stderr] Compiling strsim v0.8.0 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling bindgen v0.58.1 [INFO] [stderr] Compiling peeking_take_while v0.1.2 [INFO] [stderr] Compiling rustc-hash v1.1.0 [INFO] [stderr] Compiling lazycell v1.3.0 [INFO] [stderr] Compiling shlex v1.0.0 [INFO] [stderr] Compiling thread_local v1.0.1 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling clang-sys v1.0.0 [INFO] [stderr] Compiling aho-corasick v0.7.13 [INFO] [stderr] Compiling nom v5.1.2 [INFO] [stderr] Compiling quote v1.0.7 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling which v3.1.1 [INFO] [stderr] Compiling clap v2.33.3 [INFO] [stderr] Compiling regex v1.3.9 [INFO] [stderr] Compiling env_logger v0.8.3 [INFO] [stderr] Compiling cexpr v0.4.0 [INFO] [stderr] Compiling librna-sys v0.1.3 (/opt/rustwide/workdir) [INFO] [stderr] The following warnings were emitted during compilation: [INFO] [stderr] [INFO] [stderr] warning: LIBRNA_INCLUDE_DIR not set. [INFO] [stderr] warning: Using LIBRNA_INCLUDE_DIR=/usr/include as default. [INFO] [stderr] warning: LIBRNA_LIB_DIR not set. [INFO] [stderr] warning: Using LIBRNA_LIB_DIR=/usr/lib as default. [INFO] [stderr] [INFO] [stderr] error: failed to run custom build command for `librna-sys v0.1.3 (/opt/rustwide/workdir)` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/librna-sys-05b8d65d50dc3b98/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] cargo:warning=LIBRNA_INCLUDE_DIR not set. [INFO] [stderr] cargo:warning=Using LIBRNA_INCLUDE_DIR=/usr/include as default. [INFO] [stderr] cargo:include=/usr/include [INFO] [stderr] cargo:warning=LIBRNA_LIB_DIR not set. [INFO] [stderr] cargo:warning=Using LIBRNA_LIB_DIR=/usr/lib as default. [INFO] [stderr] cargo:rustc-link-search=native=/usr/lib [INFO] [stderr] cargo:rustc-link-lib=static=RNA [INFO] [stderr] cargo:rerun-if-changed=src/wrapper.h [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] src/wrapper.h:1:10: fatal error: 'ViennaRNA/2Dfold.h' file not found [INFO] [stderr] src/wrapper.h:1:10: fatal error: 'ViennaRNA/2Dfold.h' file not found, err: true [INFO] [stderr] thread 'main' panicked at 'Unable to generate bindings: ()', src/build.rs:72:10 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x56307183802c - std::backtrace_rs::backtrace::libunwind::trace::h793e05efd273d0f4 [INFO] [stderr] at /rustc/8262275854dc0e5381c9d42d56257d94932c5a87/library/std/src/../../backtrace/src/backtrace/libunwind.rs:93:5 [INFO] [stderr] 1: 0x56307183802c - std::backtrace_rs::backtrace::trace_unsynchronized::h640b7b86ff610c77 [INFO] [stderr] at /rustc/8262275854dc0e5381c9d42d56257d94932c5a87/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x56307183802c - std::sys_common::backtrace::_print_fmt::h362fa2a4f354f877 [INFO] [stderr] at /rustc/8262275854dc0e5381c9d42d56257d94932c5a87/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x56307183802c - ::fmt::hf439e5ed84c74abd [INFO] [stderr] at /rustc/8262275854dc0e5381c9d42d56257d94932c5a87/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x56307185d1ac - core::fmt::write::h72801a82c94e6ff1 [INFO] [stderr] at /rustc/8262275854dc0e5381c9d42d56257d94932c5a87/library/core/src/fmt/mod.rs:1149:17 [INFO] [stderr] 5: 0x5630718344a5 - std::io::Write::write_fmt::h5562a8b6da0f0339 [INFO] [stderr] at /rustc/8262275854dc0e5381c9d42d56257d94932c5a87/library/std/src/io/mod.rs:1697:15 [INFO] [stderr] 6: 0x563071839b90 - std::sys_common::backtrace::_print::hb29ddd998d02631c [INFO] [stderr] at /rustc/8262275854dc0e5381c9d42d56257d94932c5a87/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x563071839b90 - std::sys_common::backtrace::print::h81965e3d7c90fbb6 [INFO] [stderr] at /rustc/8262275854dc0e5381c9d42d56257d94932c5a87/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x563071839b90 - std::panicking::default_hook::{{closure}}::h84db205ab6674b38 [INFO] [stderr] at /rustc/8262275854dc0e5381c9d42d56257d94932c5a87/library/std/src/panicking.rs:211:50 [INFO] [stderr] 9: 0x56307183973b - std::panicking::default_hook::h1bf8bb4159936bca [INFO] [stderr] at /rustc/8262275854dc0e5381c9d42d56257d94932c5a87/library/std/src/panicking.rs:228:9 [INFO] [stderr] 10: 0x56307183a244 - std::panicking::rust_panic_with_hook::hf8e86850fbbd03b1 [INFO] [stderr] at /rustc/8262275854dc0e5381c9d42d56257d94932c5a87/library/std/src/panicking.rs:606:17 [INFO] [stderr] 11: 0x563071839d20 - std::panicking::begin_panic_handler::{{closure}}::h590a0d6060ff866e [INFO] [stderr] at /rustc/8262275854dc0e5381c9d42d56257d94932c5a87/library/std/src/panicking.rs:502:13 [INFO] [stderr] 12: 0x5630718384e4 - std::sys_common::backtrace::__rust_end_short_backtrace::h260b8bd1c848a03c [INFO] [stderr] at /rustc/8262275854dc0e5381c9d42d56257d94932c5a87/library/std/src/sys_common/backtrace.rs:139:18 [INFO] [stderr] 13: 0x563071839c89 - rust_begin_unwind [INFO] [stderr] at /rustc/8262275854dc0e5381c9d42d56257d94932c5a87/library/std/src/panicking.rs:498:5 [INFO] [stderr] 14: 0x5630712ff7f1 - core::panicking::panic_fmt::h7b8580d81fcbbacd [INFO] [stderr] at /rustc/8262275854dc0e5381c9d42d56257d94932c5a87/library/core/src/panicking.rs:106:14 [INFO] [stderr] 15: 0x5630712ff8e3 - core::result::unwrap_failed::h885d3f7beb571353 [INFO] [stderr] at /rustc/8262275854dc0e5381c9d42d56257d94932c5a87/library/core/src/result.rs:1613:5 [INFO] [stderr] 16: 0x5630713026e5 - core::result::Result::expect::h663d5819517644a2 [INFO] [stderr] at /rustc/8262275854dc0e5381c9d42d56257d94932c5a87/library/core/src/result.rs:1255:23 [INFO] [stderr] 17: 0x563071303c64 - build_script_build::main::h7841b1969077a569 [INFO] [stderr] at /opt/rustwide/workdir/src/build.rs:67:20 [INFO] [stderr] 18: 0x563071301a8b - core::ops::function::FnOnce::call_once::ha8b1c32e53c16952 [INFO] [stderr] at /rustc/8262275854dc0e5381c9d42d56257d94932c5a87/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 19: 0x5630713019ae - std::sys_common::backtrace::__rust_begin_short_backtrace::h5011371649523cf0 [INFO] [stderr] at /rustc/8262275854dc0e5381c9d42d56257d94932c5a87/library/std/src/sys_common/backtrace.rs:123:18 [INFO] [stderr] 20: 0x563071305911 - std::rt::lang_start::{{closure}}::h76ba847cad4fdae4 [INFO] [stderr] at /rustc/8262275854dc0e5381c9d42d56257d94932c5a87/library/std/src/rt.rs:145:18 [INFO] [stderr] 21: 0x563071837871 - core::ops::function::impls:: for &F>::call_once::h42d3791e66d196c0 [INFO] [stderr] at /rustc/8262275854dc0e5381c9d42d56257d94932c5a87/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 22: 0x563071837871 - std::panicking::try::do_call::hc3bcb188e535517f [INFO] [stderr] at /rustc/8262275854dc0e5381c9d42d56257d94932c5a87/library/std/src/panicking.rs:406:40 [INFO] [stderr] 23: 0x563071837871 - std::panicking::try::hb1edf04d4a7097ab [INFO] [stderr] at /rustc/8262275854dc0e5381c9d42d56257d94932c5a87/library/std/src/panicking.rs:370:19 [INFO] [stderr] 24: 0x563071837871 - std::panic::catch_unwind::h75ed941ac0d36d57 [INFO] [stderr] at /rustc/8262275854dc0e5381c9d42d56257d94932c5a87/library/std/src/panic.rs:133:14 [INFO] [stderr] 25: 0x563071837871 - std::rt::lang_start_internal::{{closure}}::hc702b3389af4cbea [INFO] [stderr] at /rustc/8262275854dc0e5381c9d42d56257d94932c5a87/library/std/src/rt.rs:128:48 [INFO] [stderr] 26: 0x563071837871 - std::panicking::try::do_call::h53276a03c7fe2ebc [INFO] [stderr] at /rustc/8262275854dc0e5381c9d42d56257d94932c5a87/library/std/src/panicking.rs:406:40 [INFO] [stderr] 27: 0x563071837871 - std::panicking::try::ha9e37f45dc542517 [INFO] [stderr] at /rustc/8262275854dc0e5381c9d42d56257d94932c5a87/library/std/src/panicking.rs:370:19 [INFO] [stderr] 28: 0x563071837871 - std::panic::catch_unwind::h182647595766fee7 [INFO] [stderr] at /rustc/8262275854dc0e5381c9d42d56257d94932c5a87/library/std/src/panic.rs:133:14 [INFO] [stderr] 29: 0x563071837871 - std::rt::lang_start_internal::h571831ebdba142de [INFO] [stderr] at /rustc/8262275854dc0e5381c9d42d56257d94932c5a87/library/std/src/rt.rs:128:20 [INFO] [stderr] 30: 0x5630713058e0 - std::rt::lang_start::hee716f6c71c6fa5e [INFO] [stderr] at /rustc/8262275854dc0e5381c9d42d56257d94932c5a87/library/std/src/rt.rs:144:17 [INFO] [stderr] 31: 0x563071303ebc - main [INFO] [stderr] 32: 0x7f8e5e31c0b3 - __libc_start_main [INFO] [stderr] 33: 0x5630712fffae - _start [INFO] [stderr] 34: 0x0 - [INFO] running `Command { std: "docker" "inspect" "d1858f4fba8644e5f4436d3e53edc29337ec8a8c7b640959264db8332ec0a92d", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "d1858f4fba8644e5f4436d3e53edc29337ec8a8c7b640959264db8332ec0a92d", kill_on_drop: false }` [INFO] [stdout] d1858f4fba8644e5f4436d3e53edc29337ec8a8c7b640959264db8332ec0a92d