[INFO] cloning repository https://github.com/p-sud/gembs-to-bismark-bed-converter [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/p-sud/gembs-to-bismark-bed-converter" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fp-sud%2Fgembs-to-bismark-bed-converter", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fp-sud%2Fgembs-to-bismark-bed-converter'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 253b463673014677fc8ef6392643d036966fab89 [INFO] testing p-sud/gembs-to-bismark-bed-converter against try#8262275854dc0e5381c9d42d56257d94932c5a87 for pr-90799 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fp-sud%2Fgembs-to-bismark-bed-converter" "/workspace/builds/worker-116/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-116/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/p-sud/gembs-to-bismark-bed-converter on toolchain 8262275854dc0e5381c9d42d56257d94932c5a87 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+8262275854dc0e5381c9d42d56257d94932c5a87" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/p-sud/gembs-to-bismark-bed-converter [INFO] finished tweaking git repo https://github.com/p-sud/gembs-to-bismark-bed-converter [INFO] tweaked toml for git repo https://github.com/p-sud/gembs-to-bismark-bed-converter written to /workspace/builds/worker-116/source/Cargo.toml [INFO] crate git repo https://github.com/p-sud/gembs-to-bismark-bed-converter already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+8262275854dc0e5381c9d42d56257d94932c5a87" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded rustversion v1.0.1 [INFO] [stderr] Downloaded proc-macro-error v0.4.4 [INFO] [stderr] Downloaded structopt v0.3.7 [INFO] [stderr] Downloaded structopt-derive v0.4.0 [INFO] [stderr] Downloaded proc-macro-error-attr v0.4.3 [INFO] [stderr] Downloaded csv v1.1.2 [INFO] [stderr] Downloaded syn-mid v0.4.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-116/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-116/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e8397a04204aaf8b9f284182a6f9e27a3c2e67044d0943b4415b160bfc957681" "/opt/rustwide/cargo-home/bin/cargo" "+8262275854dc0e5381c9d42d56257d94932c5a87" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 22dd48aeafbab5d913208b33dd63fde6b623c7a3d426659703ee9f42b55b1d57 [INFO] running `Command { std: "docker" "start" "-a" "22dd48aeafbab5d913208b33dd63fde6b623c7a3d426659703ee9f42b55b1d57", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "22dd48aeafbab5d913208b33dd63fde6b623c7a3d426659703ee9f42b55b1d57", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "22dd48aeafbab5d913208b33dd63fde6b623c7a3d426659703ee9f42b55b1d57", kill_on_drop: false }` [INFO] [stdout] 22dd48aeafbab5d913208b33dd63fde6b623c7a3d426659703ee9f42b55b1d57 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-116/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-116/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e8397a04204aaf8b9f284182a6f9e27a3c2e67044d0943b4415b160bfc957681" "/opt/rustwide/cargo-home/bin/cargo" "+8262275854dc0e5381c9d42d56257d94932c5a87" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] f49c85c50a10a41530c89bcf3aba8f72cf0ba4566c67aed436a924fd8295bb16 [INFO] running `Command { std: "docker" "start" "-a" "f49c85c50a10a41530c89bcf3aba8f72cf0ba4566c67aed436a924fd8295bb16", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling proc-macro2 v1.0.7 [INFO] [stderr] Compiling unicode-xid v0.2.0 [INFO] [stderr] Compiling syn v1.0.13 [INFO] [stderr] Compiling libc v0.2.66 [INFO] [stderr] Compiling byteorder v1.3.2 [INFO] [stderr] Compiling memchr v2.2.1 [INFO] [stderr] Compiling serde v1.0.104 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling unicode-segmentation v1.6.0 [INFO] [stderr] Compiling unicode-width v0.1.7 [INFO] [stderr] Compiling ryu v1.0.2 [INFO] [stderr] Compiling strsim v0.8.0 [INFO] [stderr] Compiling vec_map v0.8.1 [INFO] [stderr] Compiling ansi_term v0.11.0 [INFO] [stderr] Compiling itoa v0.4.4 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling heck v0.3.1 [INFO] [stderr] Compiling regex-automata v0.1.8 [INFO] [stderr] Compiling quote v1.0.2 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling clap v2.33.0 [INFO] [stderr] Compiling csv-core v0.1.6 [INFO] [stderr] Compiling syn-mid v0.4.0 [INFO] [stderr] Compiling rustversion v1.0.1 [INFO] [stderr] Compiling serde_derive v1.0.104 [INFO] [stderr] Compiling proc-macro-error v0.4.4 [INFO] [stderr] Compiling proc-macro-error-attr v0.4.3 [INFO] [stderr] Compiling structopt-derive v0.4.0 [INFO] [stderr] Compiling structopt v0.3.7 [INFO] [stderr] Compiling bstr v0.2.8 [INFO] [stderr] Compiling csv v1.1.2 [INFO] [stderr] Compiling gembs-to-bismark-bed-converter v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: field is never read: `reference_call` [INFO] [stdout] --> src/main.rs:24:5 [INFO] [stdout] | [INFO] [stdout] 24 | reference_call: String, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `genotype_call` [INFO] [stdout] --> src/main.rs:26:5 [INFO] [stdout] | [INFO] [stdout] 26 | genotype_call: String, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `flags` [INFO] [stdout] --> src/main.rs:28:5 [INFO] [stdout] | [INFO] [stdout] 28 | flags: String, [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `methylation_estimate` [INFO] [stdout] --> src/main.rs:30:5 [INFO] [stdout] | [INFO] [stdout] 30 | methylation_estimate: String, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `total_bases_supporting_call` [INFO] [stdout] --> src/main.rs:35:5 [INFO] [stdout] | [INFO] [stdout] 35 | total_bases_supporting_call: u16, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `total_bases` [INFO] [stdout] --> src/main.rs:39:5 [INFO] [stdout] | [INFO] [stdout] 39 | total_bases: u16, [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 6 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 21.63s [INFO] running `Command { std: "docker" "inspect" "f49c85c50a10a41530c89bcf3aba8f72cf0ba4566c67aed436a924fd8295bb16", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f49c85c50a10a41530c89bcf3aba8f72cf0ba4566c67aed436a924fd8295bb16", kill_on_drop: false }` [INFO] [stdout] f49c85c50a10a41530c89bcf3aba8f72cf0ba4566c67aed436a924fd8295bb16 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-116/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-116/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e8397a04204aaf8b9f284182a6f9e27a3c2e67044d0943b4415b160bfc957681" "/opt/rustwide/cargo-home/bin/cargo" "+8262275854dc0e5381c9d42d56257d94932c5a87" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 496cfef673aedf82bf117ce01690314b1e13c0180b1d467470c66f5a382e2940 [INFO] running `Command { std: "docker" "start" "-a" "496cfef673aedf82bf117ce01690314b1e13c0180b1d467470c66f5a382e2940", kill_on_drop: false }` [INFO] [stderr] Compiling gembs-to-bismark-bed-converter v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: field is never read: `reference_call` [INFO] [stdout] --> src/main.rs:24:5 [INFO] [stdout] | [INFO] [stdout] 24 | reference_call: String, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `genotype_call` [INFO] [stdout] --> src/main.rs:26:5 [INFO] [stdout] | [INFO] [stdout] 26 | genotype_call: String, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `flags` [INFO] [stdout] --> src/main.rs:28:5 [INFO] [stdout] | [INFO] [stdout] 28 | flags: String, [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `methylation_estimate` [INFO] [stdout] --> src/main.rs:30:5 [INFO] [stdout] | [INFO] [stdout] 30 | methylation_estimate: String, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `total_bases_supporting_call` [INFO] [stdout] --> src/main.rs:35:5 [INFO] [stdout] | [INFO] [stdout] 35 | total_bases_supporting_call: u16, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `total_bases` [INFO] [stdout] --> src/main.rs:39:5 [INFO] [stdout] | [INFO] [stdout] 39 | total_bases: u16, [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 6 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 1.45s [INFO] running `Command { std: "docker" "inspect" "496cfef673aedf82bf117ce01690314b1e13c0180b1d467470c66f5a382e2940", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "496cfef673aedf82bf117ce01690314b1e13c0180b1d467470c66f5a382e2940", kill_on_drop: false }` [INFO] [stdout] 496cfef673aedf82bf117ce01690314b1e13c0180b1d467470c66f5a382e2940 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-116/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-116/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e8397a04204aaf8b9f284182a6f9e27a3c2e67044d0943b4415b160bfc957681" "/opt/rustwide/cargo-home/bin/cargo" "+8262275854dc0e5381c9d42d56257d94932c5a87" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 42979654ae2338416e922fdc8b9bc4de0704a1652d0ac2d6b2a9452fef88d0e7 [INFO] running `Command { std: "docker" "start" "-a" "42979654ae2338416e922fdc8b9bc4de0704a1652d0ac2d6b2a9452fef88d0e7", kill_on_drop: false }` [INFO] [stderr] warning: field is never read: `reference_call` [INFO] [stderr] --> src/main.rs:24:5 [INFO] [stderr] | [INFO] [stderr] 24 | reference_call: String, [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(dead_code)]` on by default [INFO] [stderr] [INFO] [stderr] warning: field is never read: `genotype_call` [INFO] [stderr] --> src/main.rs:26:5 [INFO] [stderr] | [INFO] [stderr] 26 | genotype_call: String, [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: field is never read: `flags` [INFO] [stderr] --> src/main.rs:28:5 [INFO] [stderr] | [INFO] [stderr] 28 | flags: String, [INFO] [stderr] | ^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: field is never read: `methylation_estimate` [INFO] [stderr] --> src/main.rs:30:5 [INFO] [stderr] | [INFO] [stderr] 30 | methylation_estimate: String, [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: field is never read: `total_bases_supporting_call` [INFO] [stderr] --> src/main.rs:35:5 [INFO] [stderr] | [INFO] [stderr] 35 | total_bases_supporting_call: u16, [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: field is never read: `total_bases` [INFO] [stderr] --> src/main.rs:39:5 [INFO] [stderr] | [INFO] [stderr] 39 | total_bases: u16, [INFO] [stderr] | ^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: `gembs-to-bismark-bed-converter` (bin "gembs-to-bismark-bed-converter" test) generated 6 warnings [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.11s [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/gembs_to_bismark_bed_converter-e092e432499cb419) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "42979654ae2338416e922fdc8b9bc4de0704a1652d0ac2d6b2a9452fef88d0e7", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "42979654ae2338416e922fdc8b9bc4de0704a1652d0ac2d6b2a9452fef88d0e7", kill_on_drop: false }` [INFO] [stdout] 42979654ae2338416e922fdc8b9bc4de0704a1652d0ac2d6b2a9452fef88d0e7