[INFO] fetching crate phyloprob 0.1.2... [INFO] testing phyloprob-0.1.2 against master#62efba8a050c64249dab942951bb28f710208bc8 for pr-90799 [INFO] extracting crate phyloprob 0.1.2 into /workspace/builds/worker-27/source [INFO] validating manifest of crates.io crate phyloprob 0.1.2 on toolchain 62efba8a050c64249dab942951bb28f710208bc8 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+62efba8a050c64249dab942951bb28f710208bc8" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate phyloprob 0.1.2 [INFO] finished tweaking crates.io crate phyloprob 0.1.2 [INFO] tweaked toml for crates.io crate phyloprob 0.1.2 written to /workspace/builds/worker-27/source/Cargo.toml [INFO] crate crates.io crate phyloprob 0.1.2 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+62efba8a050c64249dab942951bb28f710208bc8" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-27/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-27/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e8397a04204aaf8b9f284182a6f9e27a3c2e67044d0943b4415b160bfc957681" "/opt/rustwide/cargo-home/bin/cargo" "+62efba8a050c64249dab942951bb28f710208bc8" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] a8490049ed6c3e07f0c9680ea819cc0c11583c598450e25007c5aa5a1176ec95 [INFO] running `Command { std: "docker" "start" "-a" "a8490049ed6c3e07f0c9680ea819cc0c11583c598450e25007c5aa5a1176ec95", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "a8490049ed6c3e07f0c9680ea819cc0c11583c598450e25007c5aa5a1176ec95", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "a8490049ed6c3e07f0c9680ea819cc0c11583c598450e25007c5aa5a1176ec95", kill_on_drop: false }` [INFO] [stdout] a8490049ed6c3e07f0c9680ea819cc0c11583c598450e25007c5aa5a1176ec95 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-27/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-27/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e8397a04204aaf8b9f284182a6f9e27a3c2e67044d0943b4415b160bfc957681" "/opt/rustwide/cargo-home/bin/cargo" "+62efba8a050c64249dab942951bb28f710208bc8" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 9c5badad6f9fabe8b0e5047320b71b59d2a7863be13d9b1996f6735b3cd3de3d [INFO] running `Command { std: "docker" "start" "-a" "9c5badad6f9fabe8b0e5047320b71b59d2a7863be13d9b1996f6735b3cd3de3d", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.9 [INFO] [stderr] Compiling autocfg v1.0.0 [INFO] [stderr] Compiling unicode-xid v0.2.0 [INFO] [stderr] Compiling syn v1.0.16 [INFO] [stderr] Compiling memchr v2.3.3 [INFO] [stderr] Compiling serde v1.0.104 [INFO] [stderr] Compiling byteorder v1.3.4 [INFO] [stderr] Compiling libc v0.2.67 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling either v1.5.3 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling ryu v1.0.2 [INFO] [stderr] Compiling matrixmultiply v0.1.15 [INFO] [stderr] Compiling bv v0.7.4 [INFO] [stderr] Compiling ndarray v0.9.1 [INFO] [stderr] Compiling void v1.0.2 [INFO] [stderr] Compiling ucd-util v0.1.7 [INFO] [stderr] Compiling rawpointer v0.1.0 [INFO] [stderr] Compiling regex v0.2.11 [INFO] [stderr] Compiling lazy_static v0.1.16 [INFO] [stderr] Compiling utf8-ranges v1.0.4 [INFO] [stderr] Compiling bit-vec v0.4.4 [INFO] [stderr] Compiling rustc-hash v1.1.0 [INFO] [stderr] Compiling itoa v0.4.5 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling bytecount v0.3.2 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling unicode-width v0.1.7 [INFO] [stderr] Compiling lazy_static v0.2.11 [INFO] [stderr] Compiling approx v0.1.1 [INFO] [stderr] Compiling scoped_threadpool v0.1.9 [INFO] [stderr] Compiling unreachable v1.0.0 [INFO] [stderr] Compiling itertools v0.6.5 [INFO] [stderr] Compiling itertools v0.8.2 [INFO] [stderr] Compiling itertools v0.7.11 [INFO] [stderr] Compiling thread_local v0.3.6 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling getopts v0.2.21 [INFO] [stderr] Compiling regex-syntax v0.5.6 [INFO] [stderr] Compiling bit-set v0.4.0 [INFO] [stderr] Compiling num-traits v0.2.11 [INFO] [stderr] Compiling num-integer v0.1.42 [INFO] [stderr] Compiling regex-automata v0.1.9 [INFO] [stderr] Compiling fxhash v0.2.1 [INFO] [stderr] Compiling csv-core v0.1.10 [INFO] [stderr] Compiling aho-corasick v0.6.10 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling quote v1.0.3 [INFO] [stderr] Compiling time v0.1.42 [INFO] [stderr] Compiling num_cpus v1.12.0 [INFO] [stderr] Compiling bio-seq-algos v0.1.15 [INFO] [stderr] Compiling rna-ss-params v0.1.16 [INFO] [stderr] Compiling num-traits v0.1.43 [INFO] [stderr] Compiling num-complex v0.1.43 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling ordered-float v0.5.2 [INFO] [stderr] Compiling serde_derive v1.0.104 [INFO] [stderr] Compiling bstr v0.2.11 [INFO] [stderr] Compiling vec_map v0.8.1 [INFO] [stderr] Compiling multimap v0.4.0 [INFO] [stderr] Compiling csv v1.1.3 [INFO] [stderr] Compiling bio v0.20.3 [INFO] [stderr] Compiling rna-algos v0.1.14 [INFO] [stderr] Compiling phyloprob v0.1.2 (/opt/rustwide/workdir) [INFO] [stdout] warning: unnecessary braces around block return value [INFO] [stdout] --> src/utils.rs:18:63 [INFO] [stdout] | [INFO] [stdout] 18 | ... BaScoreMat = {RIBOSUM_85_60_BA_SCORE_MAT.iter().map(|(base_pair, &ba_score)| {(*base_pair, ba_score.exp())}).collect()}; [INFO] [stdout] | ^ ^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_braces)]` on by default [INFO] [stdout] help: remove these braces [INFO] [stdout] | [INFO] [stdout] 18 - pub static ref EXP_RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = {RIBOSUM_85_60_BA_SCORE_MAT.iter().map(|(base_pair, &ba_score)| {(*base_pair, ba_score.exp())}).collect()}; [INFO] [stdout] 18 + pub static ref EXP_RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = RIBOSUM_85_60_BA_SCORE_MAT.iter().map(|(base_pair, &ba_score)| {(*base_pair, ba_score.exp())}).collect(); [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unnecessary braces around block return value [INFO] [stdout] --> src/utils.rs:29:65 [INFO] [stdout] | [INFO] [stdout] 29 | ...eMat = {RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(*base_quadruple, bpa_score.exp())}).collect()}; [INFO] [stdout] | ^ ^ [INFO] [stdout] | [INFO] [stdout] help: remove these braces [INFO] [stdout] | [INFO] [stdout] 29 - pub static ref EXP_RIBOSUM_85_60_BPA_SCORE_MAT: BpaScoreMat = {RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(*base_quadruple, bpa_score.exp())}).collect()}; [INFO] [stdout] 29 + pub static ref EXP_RIBOSUM_85_60_BPA_SCORE_MAT: BpaScoreMat = RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(*base_quadruple, bpa_score.exp())}).collect(); [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:9:1 [INFO] [stdout] | [INFO] [stdout] 9 | / lazy_static! { [INFO] [stdout] 10 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 11 | | [ [INFO] [stdout] 12 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 29 | | pub static ref EXP_RIBOSUM_85_60_BPA_SCORE_MAT: BpaScoreMat = {RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(... [INFO] [stdout] 30 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:9:1 [INFO] [stdout] | [INFO] [stdout] 9 | / lazy_static! { [INFO] [stdout] 10 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 11 | | [ [INFO] [stdout] 12 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 29 | | pub static ref EXP_RIBOSUM_85_60_BPA_SCORE_MAT: BpaScoreMat = {RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(... [INFO] [stdout] 30 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:9:1 [INFO] [stdout] | [INFO] [stdout] 9 | / lazy_static! { [INFO] [stdout] 10 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 11 | | [ [INFO] [stdout] 12 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 29 | | pub static ref EXP_RIBOSUM_85_60_BPA_SCORE_MAT: BpaScoreMat = {RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(... [INFO] [stdout] 30 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:9:1 [INFO] [stdout] | [INFO] [stdout] 9 | / lazy_static! { [INFO] [stdout] 10 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 11 | | [ [INFO] [stdout] 12 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 29 | | pub static ref EXP_RIBOSUM_85_60_BPA_SCORE_MAT: BpaScoreMat = {RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(... [INFO] [stdout] 30 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:9:1 [INFO] [stdout] | [INFO] [stdout] 9 | / lazy_static! { [INFO] [stdout] 10 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 11 | | [ [INFO] [stdout] 12 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 29 | | pub static ref EXP_RIBOSUM_85_60_BPA_SCORE_MAT: BpaScoreMat = {RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(... [INFO] [stdout] 30 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:9:1 [INFO] [stdout] | [INFO] [stdout] 9 | / lazy_static! { [INFO] [stdout] 10 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 11 | | [ [INFO] [stdout] 12 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 29 | | pub static ref EXP_RIBOSUM_85_60_BPA_SCORE_MAT: BpaScoreMat = {RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(... [INFO] [stdout] 30 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:9:1 [INFO] [stdout] | [INFO] [stdout] 9 | / lazy_static! { [INFO] [stdout] 10 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 11 | | [ [INFO] [stdout] 12 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 29 | | pub static ref EXP_RIBOSUM_85_60_BPA_SCORE_MAT: BpaScoreMat = {RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(... [INFO] [stdout] 30 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:9:1 [INFO] [stdout] | [INFO] [stdout] 9 | / lazy_static! { [INFO] [stdout] 10 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 11 | | [ [INFO] [stdout] 12 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 29 | | pub static ref EXP_RIBOSUM_85_60_BPA_SCORE_MAT: BpaScoreMat = {RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(... [INFO] [stdout] 30 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 10 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: panic message is not a string literal [INFO] [stdout] --> src/main.rs:32:72 [INFO] [stdout] | [INFO] [stdout] 32 | Err(failure) => {print_program_usage(&program_name, &opts); panic!(failure.to_string())} [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_fmt_panics)]` on by default [INFO] [stdout] = note: this usage of panic!() is deprecated; it will be a hard error in Rust 2021 [INFO] [stdout] = note: for more information, see [INFO] [stdout] help: add a "{}" format string to Display the message [INFO] [stdout] | [INFO] [stdout] 32 | Err(failure) => {print_program_usage(&program_name, &opts); panic!("{}", failure.to_string())} [INFO] [stdout] | +++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 1 warning emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 31.12s [INFO] running `Command { std: "docker" "inspect" "9c5badad6f9fabe8b0e5047320b71b59d2a7863be13d9b1996f6735b3cd3de3d", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "9c5badad6f9fabe8b0e5047320b71b59d2a7863be13d9b1996f6735b3cd3de3d", kill_on_drop: false }` [INFO] [stdout] 9c5badad6f9fabe8b0e5047320b71b59d2a7863be13d9b1996f6735b3cd3de3d [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-27/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-27/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e8397a04204aaf8b9f284182a6f9e27a3c2e67044d0943b4415b160bfc957681" "/opt/rustwide/cargo-home/bin/cargo" "+62efba8a050c64249dab942951bb28f710208bc8" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 6b412e912e60a7f6fe8d6903fc12396229ef18f202b529d1dfb12b4517b4fb10 [INFO] running `Command { std: "docker" "start" "-a" "6b412e912e60a7f6fe8d6903fc12396229ef18f202b529d1dfb12b4517b4fb10", kill_on_drop: false }` [INFO] [stdout] warning: unnecessary braces around block return value [INFO] [stdout] --> src/utils.rs:18:63 [INFO] [stdout] | [INFO] [stdout] 18 | ... BaScoreMat = {RIBOSUM_85_60_BA_SCORE_MAT.iter().map(|(base_pair, &ba_score)| {(*base_pair, ba_score.exp())}).collect()}; [INFO] [stdout] | ^ ^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_braces)]` on by default [INFO] [stdout] help: remove these braces [INFO] [stdout] | [INFO] [stdout] 18 - pub static ref EXP_RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = {RIBOSUM_85_60_BA_SCORE_MAT.iter().map(|(base_pair, &ba_score)| {(*base_pair, ba_score.exp())}).collect()}; [INFO] [stdout] 18 + pub static ref EXP_RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = RIBOSUM_85_60_BA_SCORE_MAT.iter().map(|(base_pair, &ba_score)| {(*base_pair, ba_score.exp())}).collect(); [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unnecessary braces around block return value [INFO] [stdout] --> src/utils.rs:29:65 [INFO] [stdout] | [INFO] [stdout] 29 | ...eMat = {RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(*base_quadruple, bpa_score.exp())}).collect()}; [INFO] [stdout] | ^ ^ [INFO] [stdout] | [INFO] [stdout] help: remove these braces [INFO] [stdout] | [INFO] [stdout] 29 - pub static ref EXP_RIBOSUM_85_60_BPA_SCORE_MAT: BpaScoreMat = {RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(*base_quadruple, bpa_score.exp())}).collect()}; [INFO] [stdout] 29 + pub static ref EXP_RIBOSUM_85_60_BPA_SCORE_MAT: BpaScoreMat = RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(*base_quadruple, bpa_score.exp())}).collect(); [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:9:1 [INFO] [stdout] | [INFO] [stdout] 9 | / lazy_static! { [INFO] [stdout] 10 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 11 | | [ [INFO] [stdout] 12 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 29 | | pub static ref EXP_RIBOSUM_85_60_BPA_SCORE_MAT: BpaScoreMat = {RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(... [INFO] [stdout] 30 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:9:1 [INFO] [stdout] | [INFO] [stdout] 9 | / lazy_static! { [INFO] [stdout] 10 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 11 | | [ [INFO] [stdout] 12 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 29 | | pub static ref EXP_RIBOSUM_85_60_BPA_SCORE_MAT: BpaScoreMat = {RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(... [INFO] [stdout] 30 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:9:1 [INFO] [stdout] | [INFO] [stdout] 9 | / lazy_static! { [INFO] [stdout] 10 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 11 | | [ [INFO] [stdout] 12 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 29 | | pub static ref EXP_RIBOSUM_85_60_BPA_SCORE_MAT: BpaScoreMat = {RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(... [INFO] [stdout] 30 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:9:1 [INFO] [stdout] | [INFO] [stdout] 9 | / lazy_static! { [INFO] [stdout] 10 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 11 | | [ [INFO] [stdout] 12 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 29 | | pub static ref EXP_RIBOSUM_85_60_BPA_SCORE_MAT: BpaScoreMat = {RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(... [INFO] [stdout] 30 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:9:1 [INFO] [stdout] | [INFO] [stdout] 9 | / lazy_static! { [INFO] [stdout] 10 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 11 | | [ [INFO] [stdout] 12 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 29 | | pub static ref EXP_RIBOSUM_85_60_BPA_SCORE_MAT: BpaScoreMat = {RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(... [INFO] [stdout] 30 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:9:1 [INFO] [stdout] | [INFO] [stdout] 9 | / lazy_static! { [INFO] [stdout] 10 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 11 | | [ [INFO] [stdout] 12 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 29 | | pub static ref EXP_RIBOSUM_85_60_BPA_SCORE_MAT: BpaScoreMat = {RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(... [INFO] [stdout] 30 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:9:1 [INFO] [stdout] | [INFO] [stdout] 9 | / lazy_static! { [INFO] [stdout] 10 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 11 | | [ [INFO] [stdout] 12 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 29 | | pub static ref EXP_RIBOSUM_85_60_BPA_SCORE_MAT: BpaScoreMat = {RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(... [INFO] [stdout] 30 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:9:1 [INFO] [stdout] | [INFO] [stdout] 9 | / lazy_static! { [INFO] [stdout] 10 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 11 | | [ [INFO] [stdout] 12 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 29 | | pub static ref EXP_RIBOSUM_85_60_BPA_SCORE_MAT: BpaScoreMat = {RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(... [INFO] [stdout] 30 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Compiling phyloprob v0.1.2 (/opt/rustwide/workdir) [INFO] [stdout] warning: 10 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: panic message is not a string literal [INFO] [stdout] --> src/main.rs:32:72 [INFO] [stdout] | [INFO] [stdout] 32 | Err(failure) => {print_program_usage(&program_name, &opts); panic!(failure.to_string())} [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_fmt_panics)]` on by default [INFO] [stdout] = note: this usage of panic!() is deprecated; it will be a hard error in Rust 2021 [INFO] [stdout] = note: for more information, see [INFO] [stdout] help: add a "{}" format string to Display the message [INFO] [stdout] | [INFO] [stdout] 32 | Err(failure) => {print_program_usage(&program_name, &opts); panic!("{}", failure.to_string())} [INFO] [stdout] | +++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 1 warning emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: panic message is not a string literal [INFO] [stdout] --> src/main.rs:32:72 [INFO] [stdout] | [INFO] [stdout] 32 | Err(failure) => {print_program_usage(&program_name, &opts); panic!(failure.to_string())} [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_fmt_panics)]` on by default [INFO] [stdout] = note: this usage of panic!() is deprecated; it will be a hard error in Rust 2021 [INFO] [stdout] = note: for more information, see [INFO] [stdout] help: add a "{}" format string to Display the message [INFO] [stdout] | [INFO] [stdout] 32 | Err(failure) => {print_program_usage(&program_name, &opts); panic!("{}", failure.to_string())} [INFO] [stdout] | +++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unnecessary braces around block return value [INFO] [stdout] --> src/utils.rs:18:63 [INFO] [stdout] | [INFO] [stdout] 18 | ... BaScoreMat = {RIBOSUM_85_60_BA_SCORE_MAT.iter().map(|(base_pair, &ba_score)| {(*base_pair, ba_score.exp())}).collect()}; [INFO] [stdout] | ^ ^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_braces)]` on by default [INFO] [stdout] help: remove these braces [INFO] [stdout] | [INFO] [stdout] 18 - pub static ref EXP_RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = {RIBOSUM_85_60_BA_SCORE_MAT.iter().map(|(base_pair, &ba_score)| {(*base_pair, ba_score.exp())}).collect()}; [INFO] [stdout] 18 + pub static ref EXP_RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = RIBOSUM_85_60_BA_SCORE_MAT.iter().map(|(base_pair, &ba_score)| {(*base_pair, ba_score.exp())}).collect(); [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unnecessary braces around block return value [INFO] [stdout] --> src/utils.rs:29:65 [INFO] [stdout] | [INFO] [stdout] 29 | ...eMat = {RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(*base_quadruple, bpa_score.exp())}).collect()}; [INFO] [stdout] | ^ ^ [INFO] [stdout] | [INFO] [stdout] help: remove these braces [INFO] [stdout] | [INFO] [stdout] 29 - pub static ref EXP_RIBOSUM_85_60_BPA_SCORE_MAT: BpaScoreMat = {RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(*base_quadruple, bpa_score.exp())}).collect()}; [INFO] [stdout] 29 + pub static ref EXP_RIBOSUM_85_60_BPA_SCORE_MAT: BpaScoreMat = RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(*base_quadruple, bpa_score.exp())}).collect(); [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:9:1 [INFO] [stdout] | [INFO] [stdout] 9 | / lazy_static! { [INFO] [stdout] 10 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 11 | | [ [INFO] [stdout] 12 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 29 | | pub static ref EXP_RIBOSUM_85_60_BPA_SCORE_MAT: BpaScoreMat = {RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(... [INFO] [stdout] 30 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:9:1 [INFO] [stdout] | [INFO] [stdout] 9 | / lazy_static! { [INFO] [stdout] 10 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 11 | | [ [INFO] [stdout] 12 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 29 | | pub static ref EXP_RIBOSUM_85_60_BPA_SCORE_MAT: BpaScoreMat = {RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(... [INFO] [stdout] 30 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:9:1 [INFO] [stdout] | [INFO] [stdout] 9 | / lazy_static! { [INFO] [stdout] 10 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 11 | | [ [INFO] [stdout] 12 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 29 | | pub static ref EXP_RIBOSUM_85_60_BPA_SCORE_MAT: BpaScoreMat = {RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(... [INFO] [stdout] 30 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:9:1 [INFO] [stdout] | [INFO] [stdout] 9 | / lazy_static! { [INFO] [stdout] 10 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 11 | | [ [INFO] [stdout] 12 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 29 | | pub static ref EXP_RIBOSUM_85_60_BPA_SCORE_MAT: BpaScoreMat = {RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(... [INFO] [stdout] 30 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:9:1 [INFO] [stdout] | [INFO] [stdout] 9 | / lazy_static! { [INFO] [stdout] 10 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 11 | | [ [INFO] [stdout] 12 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 29 | | pub static ref EXP_RIBOSUM_85_60_BPA_SCORE_MAT: BpaScoreMat = {RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(... [INFO] [stdout] 30 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:9:1 [INFO] [stdout] | [INFO] [stdout] 9 | / lazy_static! { [INFO] [stdout] 10 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 11 | | [ [INFO] [stdout] 12 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 29 | | pub static ref EXP_RIBOSUM_85_60_BPA_SCORE_MAT: BpaScoreMat = {RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(... [INFO] [stdout] 30 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:9:1 [INFO] [stdout] | [INFO] [stdout] 9 | / lazy_static! { [INFO] [stdout] 10 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 11 | | [ [INFO] [stdout] 12 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 29 | | pub static ref EXP_RIBOSUM_85_60_BPA_SCORE_MAT: BpaScoreMat = {RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(... [INFO] [stdout] 30 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:9:1 [INFO] [stdout] | [INFO] [stdout] 9 | / lazy_static! { [INFO] [stdout] 10 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 11 | | [ [INFO] [stdout] 12 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 29 | | pub static ref EXP_RIBOSUM_85_60_BPA_SCORE_MAT: BpaScoreMat = {RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(... [INFO] [stdout] 30 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 1 warning emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 10 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.78s [INFO] running `Command { std: "docker" "inspect" "6b412e912e60a7f6fe8d6903fc12396229ef18f202b529d1dfb12b4517b4fb10", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "6b412e912e60a7f6fe8d6903fc12396229ef18f202b529d1dfb12b4517b4fb10", kill_on_drop: false }` [INFO] [stdout] 6b412e912e60a7f6fe8d6903fc12396229ef18f202b529d1dfb12b4517b4fb10 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-27/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-27/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e8397a04204aaf8b9f284182a6f9e27a3c2e67044d0943b4415b160bfc957681" "/opt/rustwide/cargo-home/bin/cargo" "+62efba8a050c64249dab942951bb28f710208bc8" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] f35bdecb091f4e050cce50da291aa170e7f0f704639f8307c76318aded39d631 [INFO] running `Command { std: "docker" "start" "-a" "f35bdecb091f4e050cce50da291aa170e7f0f704639f8307c76318aded39d631", kill_on_drop: false }` [INFO] [stderr] warning: unnecessary braces around block return value [INFO] [stderr] --> src/utils.rs:18:63 [INFO] [stderr] | [INFO] [stderr] 18 | ... BaScoreMat = {RIBOSUM_85_60_BA_SCORE_MAT.iter().map(|(base_pair, &ba_score)| {(*base_pair, ba_score.exp())}).collect()}; [INFO] [stderr] | ^ ^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_braces)]` on by default [INFO] [stderr] help: remove these braces [INFO] [stderr] | [INFO] [stderr] 18 - pub static ref EXP_RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = {RIBOSUM_85_60_BA_SCORE_MAT.iter().map(|(base_pair, &ba_score)| {(*base_pair, ba_score.exp())}).collect()}; [INFO] [stderr] 18 + pub static ref EXP_RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = RIBOSUM_85_60_BA_SCORE_MAT.iter().map(|(base_pair, &ba_score)| {(*base_pair, ba_score.exp())}).collect(); [INFO] [stderr] | [INFO] [stderr] [INFO] [stderr] warning: unnecessary braces around block return value [INFO] [stderr] --> src/utils.rs:29:65 [INFO] [stderr] | [INFO] [stderr] 29 | ...eMat = {RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(*base_quadruple, bpa_score.exp())}).collect()}; [INFO] [stderr] | ^ ^ [INFO] [stderr] | [INFO] [stderr] help: remove these braces [INFO] [stderr] | [INFO] [stderr] 29 - pub static ref EXP_RIBOSUM_85_60_BPA_SCORE_MAT: BpaScoreMat = {RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(*base_quadruple, bpa_score.exp())}).collect()}; [INFO] [stderr] 29 + pub static ref EXP_RIBOSUM_85_60_BPA_SCORE_MAT: BpaScoreMat = RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(*base_quadruple, bpa_score.exp())}).collect(); [INFO] [stderr] | [INFO] [stderr] [INFO] [stderr] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stderr] --> src/utils.rs:9:1 [INFO] [stderr] | [INFO] [stderr] 9 | / lazy_static! { [INFO] [stderr] 10 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stderr] 11 | | [ [INFO] [stderr] 12 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stderr] ... | [INFO] [stderr] 29 | | pub static ref EXP_RIBOSUM_85_60_BPA_SCORE_MAT: BpaScoreMat = {RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(... [INFO] [stderr] 30 | | } [INFO] [stderr] | |_^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(deprecated)]` on by default [INFO] [stderr] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred [INFO] [stderr] --> src/utils.rs:9:1 [INFO] [stderr] | [INFO] [stderr] 9 | / lazy_static! { [INFO] [stderr] 10 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stderr] 11 | | [ [INFO] [stderr] 12 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stderr] ... | [INFO] [stderr] 29 | | pub static ref EXP_RIBOSUM_85_60_BPA_SCORE_MAT: BpaScoreMat = {RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(... [INFO] [stderr] 30 | | } [INFO] [stderr] | |_^ [INFO] [stderr] | [INFO] [stderr] = note: this warning originates in the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: `phyloprob` (lib) generated 10 warnings (6 duplicates) [INFO] [stderr] warning: `phyloprob` (lib test) generated 10 warnings (10 duplicates) [INFO] [stderr] warning: panic message is not a string literal [INFO] [stderr] --> src/main.rs:32:72 [INFO] [stderr] | [INFO] [stderr] 32 | Err(failure) => {print_program_usage(&program_name, &opts); panic!(failure.to_string())} [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(non_fmt_panics)]` on by default [INFO] [stderr] = note: this usage of panic!() is deprecated; it will be a hard error in Rust 2021 [INFO] [stderr] = note: for more information, see [INFO] [stderr] help: add a "{}" format string to Display the message [INFO] [stderr] | [INFO] [stderr] 32 | Err(failure) => {print_program_usage(&program_name, &opts); panic!("{}", failure.to_string())} [INFO] [stderr] | +++++ [INFO] [stderr] [INFO] [stderr] warning: `phyloprob` (bin "phyloprob" test) generated 1 warning [INFO] [stderr] warning: `phyloprob` (bin "phyloprob") generated 1 warning (1 duplicate) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.21s [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/phyloprob-7212bf3dcd505653) [INFO] [stdout] [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/phyloprob-0bea28d0d779c2d8) [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running tests/tests.rs (/opt/rustwide/target/debug/deps/tests-39c790fa8854a875) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 1 test [INFO] [stdout] test test_phyloprob_program ... FAILED [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] [INFO] [stdout] ---- test_phyloprob_program stdout ---- [INFO] [stdout] thread 'test_phyloprob_program' panicked at 'Failed to run the PhyloProb program.: Os { code: 2, kind: NotFound, message: "No such file or directory" }', tests/tests.rs:19:45 [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x55e9a641a1bc - std::backtrace_rs::backtrace::libunwind::trace::h793e05efd273d0f4 [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/../../backtrace/src/backtrace/libunwind.rs:93:5 [INFO] [stdout] 1: 0x55e9a641a1bc - std::backtrace_rs::backtrace::trace_unsynchronized::h640b7b86ff610c77 [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stdout] 2: 0x55e9a641a1bc - std::sys_common::backtrace::_print_fmt::h362fa2a4f354f877 [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stdout] 3: 0x55e9a641a1bc - ::fmt::hf439e5ed84c74abd [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stdout] 4: 0x55e9a643cfdc - core::fmt::write::h72801a82c94e6ff1 [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/core/src/fmt/mod.rs:1149:17 [INFO] [stdout] 5: 0x55e9a6416165 - std::io::Write::write_fmt::h54337adeb3504c03 [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/io/mod.rs:1697:15 [INFO] [stdout] 6: 0x55e9a641bc10 - std::sys_common::backtrace::_print::hb29ddd998d02631c [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stdout] 7: 0x55e9a641bc10 - std::sys_common::backtrace::print::h81965e3d7c90fbb6 [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stdout] 8: 0x55e9a641bc10 - std::panicking::default_hook::{{closure}}::h84db205ab6674b38 [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/panicking.rs:211:50 [INFO] [stdout] 9: 0x55e9a641b7f6 - std::panicking::default_hook::h1bf8bb4159936bca [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/panicking.rs:225:9 [INFO] [stdout] 10: 0x55e9a641c2c4 - std::panicking::rust_panic_with_hook::hf8e86850fbbd03b1 [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/panicking.rs:606:17 [INFO] [stdout] 11: 0x55e9a641bda0 - std::panicking::begin_panic_handler::{{closure}}::h590a0d6060ff866e [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/panicking.rs:502:13 [INFO] [stdout] 12: 0x55e9a641a674 - std::sys_common::backtrace::__rust_end_short_backtrace::h260b8bd1c848a03c [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/sys_common/backtrace.rs:139:18 [INFO] [stdout] 13: 0x55e9a641bd09 - rust_begin_unwind [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/panicking.rs:498:5 [INFO] [stdout] 14: 0x55e9a63bc861 - core::panicking::panic_fmt::h7b8580d81fcbbacd [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/core/src/panicking.rs:106:14 [INFO] [stdout] 15: 0x55e9a63bc953 - core::result::unwrap_failed::h885d3f7beb571353 [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/core/src/result.rs:1613:5 [INFO] [stdout] 16: 0x55e9a63c1d4c - core::result::Result::expect::h6d4bf4b74a2b2bf0 [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/core/src/result.rs:1255:23 [INFO] [stdout] 17: 0x55e9a63be852 - tests::run_command::hfb19227e07a9231f [INFO] [stdout] at /opt/rustwide/workdir/tests/tests.rs:19:3 [INFO] [stdout] 18: 0x55e9a63be95d - tests::test_phyloprob_program::h3b8b4b9c220b13f2 [INFO] [stdout] at /opt/rustwide/workdir/tests/tests.rs:12:3 [INFO] [stdout] 19: 0x55e9a63be88a - tests::test_phyloprob_program::{{closure}}::h9b50b23e3f920c93 [INFO] [stdout] at /opt/rustwide/workdir/tests/tests.rs:8:1 [INFO] [stdout] 20: 0x55e9a63c02ee - core::ops::function::FnOnce::call_once::h03c4731557cdd3b7 [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 21: 0x55e9a63f63e3 - core::ops::function::FnOnce::call_once::h24a32b9da1a40fdb [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 22: 0x55e9a63f63e3 - test::__rust_begin_short_backtrace::h3c3a0492fb4a12eb [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/test/src/lib.rs:585:5 [INFO] [stdout] 23: 0x55e9a63f4ff7 - as core::ops::function::FnOnce>::call_once::h9a8e38435f73d5e0 [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/alloc/src/boxed.rs:1694:9 [INFO] [stdout] 24: 0x55e9a63f4ff7 - as core::ops::function::FnOnce<()>>::call_once::hb23d7496a0e6d1b4 [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/core/src/panic/unwind_safe.rs:271:9 [INFO] [stdout] 25: 0x55e9a63f4ff7 - std::panicking::try::do_call::ha2bb9825b32d2cc2 [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/panicking.rs:406:40 [INFO] [stdout] 26: 0x55e9a63f4ff7 - std::panicking::try::hdc38a574bbebc53e [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/panicking.rs:370:19 [INFO] [stdout] 27: 0x55e9a63f4ff7 - std::panic::catch_unwind::hc45ed246595c621c [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/panic.rs:133:14 [INFO] [stdout] 28: 0x55e9a63f4ff7 - test::run_test_in_process::h4249138faaea8d54 [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/test/src/lib.rs:608:18 [INFO] [stdout] 29: 0x55e9a63f4ff7 - test::run_test::run_test_inner::{{closure}}::h3c1b37669f6e9fd7 [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/test/src/lib.rs:500:39 [INFO] [stdout] 30: 0x55e9a63c229e - test::run_test::run_test_inner::{{closure}}::h388760469edd5c24 [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/test/src/lib.rs:527:37 [INFO] [stdout] 31: 0x55e9a63c229e - std::sys_common::backtrace::__rust_begin_short_backtrace::hbbaecdcfad18643e [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/sys_common/backtrace.rs:123:18 [INFO] [stdout] 32: 0x55e9a63c6ff8 - std::thread::Builder::spawn_unchecked::{{closure}}::{{closure}}::h09cd3ca65896da91 [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/thread/mod.rs:484:17 [INFO] [stdout] 33: 0x55e9a63c6ff8 - as core::ops::function::FnOnce<()>>::call_once::hc52dbb4f9088d18b [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/core/src/panic/unwind_safe.rs:271:9 [INFO] [stdout] 34: 0x55e9a63c6ff8 - std::panicking::try::do_call::h4485cfee22b11c08 [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/panicking.rs:406:40 [INFO] [stdout] 35: 0x55e9a63c6ff8 - std::panicking::try::hb62aa8549e20c08b [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/panicking.rs:370:19 [INFO] [stdout] 36: 0x55e9a63c6ff8 - std::panic::catch_unwind::ha322c7a5bc666762 [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/panic.rs:133:14 [INFO] [stdout] 37: 0x55e9a63c6ff8 - std::thread::Builder::spawn_unchecked::{{closure}}::h1076fc1398603b77 [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/thread/mod.rs:483:30 [INFO] [stdout] 38: 0x55e9a63c6ff8 - core::ops::function::FnOnce::call_once{{vtable.shim}}::h911e510344167353 [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 39: 0x55e9a6420e43 - as core::ops::function::FnOnce>::call_once::h771719d52c343434 [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/alloc/src/boxed.rs:1694:9 [INFO] [stdout] 40: 0x55e9a6420e43 - as core::ops::function::FnOnce>::call_once::hf441746dfa4b0f57 [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/alloc/src/boxed.rs:1694:9 [INFO] [stdout] 41: 0x55e9a6420e43 - std::sys::unix::thread::Thread::new::thread_start::hfd168f9d312b29ca [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/sys/unix/thread.rs:106:17 [INFO] [stdout] 42: 0x7fac9f131609 - start_thread [INFO] [stdout] 43: 0x7fac9ef09293 - clone [INFO] [stdout] 44: 0x0 - [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] test_phyloprob_program [INFO] [stdout] [INFO] [stdout] test result: FAILED. 0 passed; 1 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.03s [INFO] [stdout] [INFO] [stderr] error: test failed, to rerun pass '--test tests' [INFO] running `Command { std: "docker" "inspect" "f35bdecb091f4e050cce50da291aa170e7f0f704639f8307c76318aded39d631", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f35bdecb091f4e050cce50da291aa170e7f0f704639f8307c76318aded39d631", kill_on_drop: false }` [INFO] [stdout] f35bdecb091f4e050cce50da291aa170e7f0f704639f8307c76318aded39d631