[INFO] fetching crate openmm-sys 7.4.1... [INFO] testing openmm-sys-7.4.1 against master#62efba8a050c64249dab942951bb28f710208bc8 for pr-90799 [INFO] extracting crate openmm-sys 7.4.1 into /workspace/builds/worker-90/source [INFO] validating manifest of crates.io crate openmm-sys 7.4.1 on toolchain 62efba8a050c64249dab942951bb28f710208bc8 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+62efba8a050c64249dab942951bb28f710208bc8" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate openmm-sys 7.4.1 [INFO] finished tweaking crates.io crate openmm-sys 7.4.1 [INFO] tweaked toml for crates.io crate openmm-sys 7.4.1 written to /workspace/builds/worker-90/source/Cargo.toml [INFO] crate crates.io crate openmm-sys 7.4.1 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+62efba8a050c64249dab942951bb28f710208bc8" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-90/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-90/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e8397a04204aaf8b9f284182a6f9e27a3c2e67044d0943b4415b160bfc957681" "/opt/rustwide/cargo-home/bin/cargo" "+62efba8a050c64249dab942951bb28f710208bc8" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] bf2ab13fd15d90ad689149815a07104a0ad7380b09f18b4c9ef5d867758112bf [INFO] running `Command { std: "docker" "start" "-a" "bf2ab13fd15d90ad689149815a07104a0ad7380b09f18b4c9ef5d867758112bf", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "bf2ab13fd15d90ad689149815a07104a0ad7380b09f18b4c9ef5d867758112bf", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "bf2ab13fd15d90ad689149815a07104a0ad7380b09f18b4c9ef5d867758112bf", kill_on_drop: false }` [INFO] [stdout] bf2ab13fd15d90ad689149815a07104a0ad7380b09f18b4c9ef5d867758112bf [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-90/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-90/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e8397a04204aaf8b9f284182a6f9e27a3c2e67044d0943b4415b160bfc957681" "/opt/rustwide/cargo-home/bin/cargo" "+62efba8a050c64249dab942951bb28f710208bc8" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 23507623ccbb5edcb094f2525ee20253e67027421135e6442fe93a59ce1f21c6 [INFO] running `Command { std: "docker" "start" "-a" "23507623ccbb5edcb094f2525ee20253e67027421135e6442fe93a59ce1f21c6", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling cc v1.0.59 [INFO] [stderr] Compiling cmake v0.1.44 [INFO] [stderr] Compiling openmm-sys v7.4.1 (/opt/rustwide/workdir) [INFO] [stderr] The following warnings were emitted during compilation: [INFO] [stderr] [INFO] [stderr] warning: [OpenMM-sys] Dynamically linking against the OpenMM library. [INFO] [stderr] [INFO] [stderr] error: failed to run custom build command for `openmm-sys v7.4.1 (/opt/rustwide/workdir)` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/openmm-sys-69488f43d73918b3/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] cargo:warning=[OpenMM-sys] Dynamically linking against the OpenMM library. [INFO] [stderr] running: "cmake" "/opt/rustwide/workdir/openmm" "-DOPENMM_BUILD_PYTHON_WRAPPERS=OFF" "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/openmm-sys-fe891622825c4d48/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_ASM_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_ASM_COMPILER=/usr/bin/cc" "-DCMAKE_BUILD_TYPE=Release" [INFO] [stderr] -- Found PythonInterp: /usr/bin/python (found version "2.7.18") [INFO] [stderr] -- The C compiler identification is GNU 9.3.0 [INFO] [stderr] -- The CXX compiler identification is GNU 9.3.0 [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc -- works [INFO] [stderr] -- Detecting C compiler ABI info [INFO] [stderr] -- Detecting C compiler ABI info - done [INFO] [stderr] -- Detecting C compile features [INFO] [stderr] -- Detecting C compile features - done [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ -- works [INFO] [stderr] -- Detecting CXX compiler ABI info [INFO] [stderr] -- Detecting CXX compiler ABI info - done [INFO] [stderr] -- Detecting CXX compile features [INFO] [stderr] -- Detecting CXX compile features - done [INFO] [stderr] -- Configuring incomplete, errors occurred! [INFO] [stderr] See also "/opt/rustwide/target/debug/build/openmm-sys-fe891622825c4d48/out/build/CMakeFiles/CMakeOutput.log". [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] fatal: not a git repository (or any parent up to mount point /opt/rustwide) [INFO] [stderr] Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). [INFO] [stderr] CMake Deprecation Warning at CMakeLists.txt:25 (CMAKE_POLICY): [INFO] [stderr] The OLD behavior for policy CMP0042 will be removed from a future version [INFO] [stderr] of CMake. [INFO] [stderr] [INFO] [stderr] The cmake-policies(7) manual explains that the OLD behaviors of all [INFO] [stderr] policies are deprecated and that a policy should be set to OLD only under [INFO] [stderr] specific short-term circumstances. Projects should be ported to the NEW [INFO] [stderr] behavior and not rely on setting a policy to OLD. [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Error at /usr/share/cmake-3.16/Modules/FindPackageHandleStandardArgs.cmake:146 (message): [INFO] [stderr] Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) [INFO] [stderr] Call Stack (most recent call first): [INFO] [stderr] /usr/share/cmake-3.16/Modules/FindPackageHandleStandardArgs.cmake:393 (_FPHSA_FAILURE_MESSAGE) [INFO] [stderr] /usr/share/cmake-3.16/Modules/FindDoxygen.cmake:633 (find_package_handle_standard_args) [INFO] [stderr] wrappers/CMakeLists.txt:1 (find_package) [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] thread 'main' panicked at ' [INFO] [stderr] command did not execute successfully, got: exit status: 1 [INFO] [stderr] [INFO] [stderr] build script failed, must exit now', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.44/src/lib.rs:885:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x5605dafcf28c - std::backtrace_rs::backtrace::libunwind::trace::h793e05efd273d0f4 [INFO] [stderr] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/../../backtrace/src/backtrace/libunwind.rs:93:5 [INFO] [stderr] 1: 0x5605dafcf28c - std::backtrace_rs::backtrace::trace_unsynchronized::h640b7b86ff610c77 [INFO] [stderr] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x5605dafcf28c - std::sys_common::backtrace::_print_fmt::h362fa2a4f354f877 [INFO] [stderr] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x5605dafcf28c - ::fmt::hf439e5ed84c74abd [INFO] [stderr] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x5605dafef7ec - core::fmt::write::h72801a82c94e6ff1 [INFO] [stderr] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/core/src/fmt/mod.rs:1149:17 [INFO] [stderr] 5: 0x5605dafcb575 - std::io::Write::write_fmt::h5562a8b6da0f0339 [INFO] [stderr] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/io/mod.rs:1697:15 [INFO] [stderr] 6: 0x5605dafd1020 - std::sys_common::backtrace::_print::hb29ddd998d02631c [INFO] [stderr] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x5605dafd1020 - std::sys_common::backtrace::print::h81965e3d7c90fbb6 [INFO] [stderr] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x5605dafd1020 - std::panicking::default_hook::{{closure}}::h84db205ab6674b38 [INFO] [stderr] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/panicking.rs:211:50 [INFO] [stderr] 9: 0x5605dafd0bcb - std::panicking::default_hook::h1bf8bb4159936bca [INFO] [stderr] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/panicking.rs:228:9 [INFO] [stderr] 10: 0x5605dafd16d4 - std::panicking::rust_panic_with_hook::hf8e86850fbbd03b1 [INFO] [stderr] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/panicking.rs:606:17 [INFO] [stderr] 11: 0x5605dafd11b0 - std::panicking::begin_panic_handler::{{closure}}::h590a0d6060ff866e [INFO] [stderr] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/panicking.rs:502:13 [INFO] [stderr] 12: 0x5605dafcf744 - std::sys_common::backtrace::__rust_end_short_backtrace::h260b8bd1c848a03c [INFO] [stderr] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/sys_common/backtrace.rs:139:18 [INFO] [stderr] 13: 0x5605dafd1119 - rust_begin_unwind [INFO] [stderr] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/panicking.rs:498:5 [INFO] [stderr] 14: 0x5605daf5a201 - core::panicking::panic_fmt::h7b8580d81fcbbacd [INFO] [stderr] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/core/src/panicking.rs:106:14 [INFO] [stderr] 15: 0x5605daf682dc - cmake::fail::h64f3d4527b1b7e2a [INFO] [stderr] 16: 0x5605daf67d2a - cmake::run::hcc03ced49036d331 [INFO] [stderr] 17: 0x5605daf641c5 - cmake::Config::build::he777c9fd98ab8bea [INFO] [stderr] 18: 0x5605daf5d5b9 - build_script_build::main::h7272524aef602cff [INFO] [stderr] 19: 0x5605daf5eb73 - core::ops::function::FnOnce::call_once::h01fa509463bd424d [INFO] [stderr] 20: 0x5605daf5f209 - std::sys_common::backtrace::__rust_begin_short_backtrace::hec1349155a6b9140 [INFO] [stderr] 21: 0x5605daf5ea79 - std::rt::lang_start::{{closure}}::hc6495db4365180b2 [INFO] [stderr] 22: 0x5605dafcead1 - core::ops::function::impls:: for &F>::call_once::h42d3791e66d196c0 [INFO] [stderr] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 23: 0x5605dafcead1 - std::panicking::try::do_call::hc3bcb188e535517f [INFO] [stderr] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/panicking.rs:406:40 [INFO] [stderr] 24: 0x5605dafcead1 - std::panicking::try::hb1edf04d4a7097ab [INFO] [stderr] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/panicking.rs:370:19 [INFO] [stderr] 25: 0x5605dafcead1 - std::panic::catch_unwind::h75ed941ac0d36d57 [INFO] [stderr] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/panic.rs:133:14 [INFO] [stderr] 26: 0x5605dafcead1 - std::rt::lang_start_internal::{{closure}}::hc702b3389af4cbea [INFO] [stderr] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/rt.rs:128:48 [INFO] [stderr] 27: 0x5605dafcead1 - std::panicking::try::do_call::h53276a03c7fe2ebc [INFO] [stderr] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/panicking.rs:406:40 [INFO] [stderr] 28: 0x5605dafcead1 - std::panicking::try::ha9e37f45dc542517 [INFO] [stderr] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/panicking.rs:370:19 [INFO] [stderr] 29: 0x5605dafcead1 - std::panic::catch_unwind::h182647595766fee7 [INFO] [stderr] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/panic.rs:133:14 [INFO] [stderr] 30: 0x5605dafcead1 - std::rt::lang_start_internal::h571831ebdba142de [INFO] [stderr] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/rt.rs:128:20 [INFO] [stderr] 31: 0x5605daf5ea61 - std::rt::lang_start::hb5a7ba1e7ada87aa [INFO] [stderr] 32: 0x5605daf5e163 - main [INFO] [stderr] 33: 0x7f29acb300b3 - __libc_start_main [INFO] [stderr] 34: 0x5605daf5a91e - _start [INFO] [stderr] 35: 0x0 - [INFO] running `Command { std: "docker" "inspect" "23507623ccbb5edcb094f2525ee20253e67027421135e6442fe93a59ce1f21c6", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "23507623ccbb5edcb094f2525ee20253e67027421135e6442fe93a59ce1f21c6", kill_on_drop: false }` [INFO] [stdout] 23507623ccbb5edcb094f2525ee20253e67027421135e6442fe93a59ce1f21c6