[INFO] fetching crate noodles-gff 0.4.0... [INFO] testing noodles-gff-0.4.0 against master#62efba8a050c64249dab942951bb28f710208bc8 for pr-90799 [INFO] extracting crate noodles-gff 0.4.0 into /workspace/builds/worker-82/source [INFO] validating manifest of crates.io crate noodles-gff 0.4.0 on toolchain 62efba8a050c64249dab942951bb28f710208bc8 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+62efba8a050c64249dab942951bb28f710208bc8" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate noodles-gff 0.4.0 [INFO] finished tweaking crates.io crate noodles-gff 0.4.0 [INFO] tweaked toml for crates.io crate noodles-gff 0.4.0 written to /workspace/builds/worker-82/source/Cargo.toml [INFO] crate crates.io crate noodles-gff 0.4.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+62efba8a050c64249dab942951bb28f710208bc8" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-82/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-82/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e8397a04204aaf8b9f284182a6f9e27a3c2e67044d0943b4415b160bfc957681" "/opt/rustwide/cargo-home/bin/cargo" "+62efba8a050c64249dab942951bb28f710208bc8" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] dad03a4ab5acfbb653486ba9827d235e4c7ff6a6cbbb5656f0c15230a975eb2e [INFO] running `Command { std: "docker" "start" "-a" "dad03a4ab5acfbb653486ba9827d235e4c7ff6a6cbbb5656f0c15230a975eb2e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "dad03a4ab5acfbb653486ba9827d235e4c7ff6a6cbbb5656f0c15230a975eb2e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "dad03a4ab5acfbb653486ba9827d235e4c7ff6a6cbbb5656f0c15230a975eb2e", kill_on_drop: false }` [INFO] [stdout] dad03a4ab5acfbb653486ba9827d235e4c7ff6a6cbbb5656f0c15230a975eb2e [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-82/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-82/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e8397a04204aaf8b9f284182a6f9e27a3c2e67044d0943b4415b160bfc957681" "/opt/rustwide/cargo-home/bin/cargo" "+62efba8a050c64249dab942951bb28f710208bc8" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 3ccf85d0181c325fda84104244cd465206c178e07b275deb899337d58be7e5e3 [INFO] running `Command { std: "docker" "start" "-a" "3ccf85d0181c325fda84104244cd465206c178e07b275deb899337d58be7e5e3", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling noodles-gff v0.4.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 0.90s [INFO] running `Command { std: "docker" "inspect" "3ccf85d0181c325fda84104244cd465206c178e07b275deb899337d58be7e5e3", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "3ccf85d0181c325fda84104244cd465206c178e07b275deb899337d58be7e5e3", kill_on_drop: false }` [INFO] [stdout] 3ccf85d0181c325fda84104244cd465206c178e07b275deb899337d58be7e5e3 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-82/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-82/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e8397a04204aaf8b9f284182a6f9e27a3c2e67044d0943b4415b160bfc957681" "/opt/rustwide/cargo-home/bin/cargo" "+62efba8a050c64249dab942951bb28f710208bc8" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 5918379d4c157f596bc5d4c0ac5a28107139bdceadb058455855b2b1f492c7f5 [INFO] running `Command { std: "docker" "start" "-a" "5918379d4c157f596bc5d4c0ac5a28107139bdceadb058455855b2b1f492c7f5", kill_on_drop: false }` [INFO] [stderr] Compiling noodles-gff v0.4.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 1.18s [INFO] running `Command { std: "docker" "inspect" "5918379d4c157f596bc5d4c0ac5a28107139bdceadb058455855b2b1f492c7f5", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "5918379d4c157f596bc5d4c0ac5a28107139bdceadb058455855b2b1f492c7f5", kill_on_drop: false }` [INFO] [stdout] 5918379d4c157f596bc5d4c0ac5a28107139bdceadb058455855b2b1f492c7f5 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-82/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-82/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e8397a04204aaf8b9f284182a6f9e27a3c2e67044d0943b4415b160bfc957681" "/opt/rustwide/cargo-home/bin/cargo" "+62efba8a050c64249dab942951bb28f710208bc8" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 280cbd5c3764a8fcf28176b90e063db3667624e566c695872ef2733b43d160c2 [INFO] running `Command { std: "docker" "start" "-a" "280cbd5c3764a8fcf28176b90e063db3667624e566c695872ef2733b43d160c2", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.06s [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/noodles_gff-d5400780f7a9fa95) [INFO] [stdout] [INFO] [stdout] running 27 tests [INFO] [stdout] test directive::genome_build::tests::test_fmt ... ok [INFO] [stdout] test directive::genome_build::tests::test_from_str ... ok [INFO] [stdout] test directive::gff_version::tests::test_fmt ... ok [INFO] [stdout] test directive::sequence_region::tests::test_fmt ... ok [INFO] [stdout] test directive::gff_version::tests::test_from_str ... ok [INFO] [stdout] test directive::tests::test_fmt ... ok [INFO] [stdout] test line::tests::test_from_str ... ok [INFO] [stdout] test reader::tests::test_records ... ok [INFO] [stdout] test record::attributes::entry::tests::test_from_str ... ok [INFO] [stdout] test reader::tests::test_records_with_fasta_directive ... ok [INFO] [stdout] test record::phase::tests::test_fmt ... ok [INFO] [stdout] test record::builder::tests::test_default ... ok [INFO] [stdout] test record::strand::tests::test_fmt ... ok [INFO] [stdout] test directive::sequence_region::tests::test_from_str ... ok [INFO] [stdout] test record::attributes::tests::test_fmt ... ok [INFO] [stdout] test record::strand::tests::test_from_str ... ok [INFO] [stdout] test record::builder::tests::test_build ... ok [INFO] [stdout] test record::strand::tests::test_default ... ok [INFO] [stdout] test record::strand::tests::test_from_strand_for_char ... ok [INFO] [stdout] test record::attributes::entry::tests::test_fmt ... ok [INFO] [stdout] test reader::tests::test_read_line ... ok [INFO] [stdout] test record::tests::test_from_str ... ok [INFO] [stdout] test record::tests::test_from_str_with_cds_feature_and_no_phase ... ok [INFO] [stdout] test record::attributes::tests::test_from_str ... ok [INFO] [stdout] test record::tests::test_fmt ... ok [INFO] [stdout] test record::phase::tests::test_from_str ... ok [INFO] [stdout] test record::tests::test_parse_reference_sequence_name ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 27 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.02s [INFO] [stdout] [INFO] [stderr] Doc-tests noodles-gff [INFO] [stdout] [INFO] [stdout] running 45 tests [INFO] [stdout] test src/lib.rs - (line 13) - compile ... ok [INFO] [stdout] test src/reader.rs - reader::Reader::get_ref (line 39) ... ok [INFO] [stdout] test src/directive/genome_build.rs - directive::genome_build::GenomeBuild::source (line 31) ... ok [INFO] [stdout] test src/directive/gff_version.rs - directive::gff_version::GffVersion::patch (line 53) ... ok [INFO] [stdout] test src/directive/sequence_region.rs - directive::sequence_region::SequenceRegion::new (line 20) ... ok [INFO] [stdout] test src/directive/genome_build.rs - directive::genome_build::GenomeBuild::new (line 19) ... ok [INFO] [stdout] test src/directive/gff_version.rs - directive::gff_version::GffVersion::major (line 23) ... ok [INFO] [stdout] test src/record/builder.rs - record::builder::Builder::set_attributes (line 164) ... FAILED [INFO] [stdout] test src/reader.rs - reader::Reader::new (line 26) ... ok [INFO] [stdout] test src/reader.rs - reader::Reader::lines (line 113) ... FAILED [INFO] [stdout] test src/reader.rs - reader::Reader::read_line (line 86) ... FAILED [INFO] [stdout] test src/reader.rs - reader::Reader::records (line 143) ... FAILED [INFO] [stdout] test src/reader.rs - reader::Reader::into_inner (line 55) ... FAILED [INFO] [stdout] test src/writer.rs - writer::Writer::write_record (line 63) ... FAILED [INFO] [stdout] test src/writer.rs - writer::Writer::write_directive (line 43) ... FAILED [INFO] [stdout] test src/directive/gff_version.rs - directive::gff_version::GffVersion::minor (line 38) ... FAILED [INFO] [stdout] test src/directive/genome_build.rs - directive::genome_build::GenomeBuild::name (line 44) ... FAILED [INFO] [stdout] test src/record/builder.rs - record::builder::Builder::set_reference_sequence_name (line 36) ... FAILED [INFO] [stdout] test src/directive/sequence_region.rs - directive::sequence_region::SequenceRegion::reference_sequence_name (line 36) ... ok [INFO] [stdout] test src/record.rs - record::Record::builder (line 38) ... ok [INFO] [stdout] test src/record/attributes/entry.rs - record::attributes::entry::Entry::value (line 67) ... ok [INFO] [stdout] test src/record/builder.rs - record::builder::Builder::set_score (line 118) ... ok [INFO] [stdout] test src/record.rs - record::Record::end (line 111) ... ok [INFO] [stdout] test src/record/builder.rs - record::builder::Builder::set_start (line 90) ... ok [INFO] [stdout] test src/record/builder.rs - record::builder::Builder::set_phase (line 150) ... ok [INFO] [stdout] test src/record.rs - record::Record::ty (line 81) ... ok [INFO] [stdout] test src/directive/sequence_region.rs - directive::sequence_region::SequenceRegion::end (line 66) ... ok [INFO] [stdout] test src/record/builder.rs - record::builder::Builder::new (line 24) ... ok [INFO] [stdout] test src/record.rs - record::Record::reference_sequence_name (line 55) ... ok [INFO] [stdout] test src/record/attributes/entry.rs - record::attributes::entry::Entry::key (line 54) ... ok [INFO] [stdout] test src/record/builder.rs - record::builder::Builder::set_strand (line 132) ... ok [INFO] [stdout] test src/record/attributes/entry.rs - record::attributes::entry::Entry::new (line 35) ... ok [INFO] [stdout] test src/record.rs - record::Record::start (line 96) ... ok [INFO] [stdout] test src/writer.rs - writer::Writer::get_ref (line 30) ... ok [INFO] [stdout] test src/record.rs - record::Record::source (line 68) ... ok [INFO] [stdout] test src/record.rs - record::Record::phase (line 150) ... ok [INFO] [stdout] test src/record/builder.rs - record::builder::Builder::set_type (line 72) ... ok [INFO] [stdout] test src/writer.rs - writer::Writer::new (line 18) ... ok [INFO] [stdout] test src/record/builder.rs - record::builder::Builder::set_end (line 104) ... ok [INFO] [stdout] test src/record.rs - record::Record::score (line 124) ... ok [INFO] [stdout] test src/record/builder.rs - record::builder::Builder::build (line 187) ... ok [INFO] [stdout] test src/directive/sequence_region.rs - directive::sequence_region::SequenceRegion::start (line 51) ... ok [INFO] [stdout] test src/record.rs - record::Record::strand (line 137) ... ok [INFO] [stdout] test src/record.rs - record::Record::attributes (line 163) ... ok [INFO] [stdout] test src/record/builder.rs - record::builder::Builder::set_source (line 54) ... ok [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] [INFO] [stdout] ---- src/record/builder.rs - record::builder::Builder::set_attributes (line 164) stdout ---- [INFO] [stdout] Couldn't compile the test. [INFO] [stdout] ---- src/reader.rs - reader::Reader::lines (line 113) stdout ---- [INFO] [stdout] Couldn't compile the test. [INFO] [stdout] ---- src/reader.rs - reader::Reader::read_line (line 86) stdout ---- [INFO] [stdout] Couldn't compile the test. [INFO] [stdout] ---- src/reader.rs - reader::Reader::records (line 143) stdout ---- [INFO] [stdout] Couldn't compile the test. [INFO] [stdout] ---- src/reader.rs - reader::Reader::into_inner (line 55) stdout ---- [INFO] [stdout] Couldn't compile the test. [INFO] [stdout] ---- src/writer.rs - writer::Writer::write_record (line 63) stdout ---- [INFO] [stdout] Couldn't compile the test. [INFO] [stdout] ---- src/writer.rs - writer::Writer::write_directive (line 43) stdout ---- [INFO] [stdout] Couldn't compile the test. [INFO] [stdout] ---- src/directive/gff_version.rs - directive::gff_version::GffVersion::minor (line 38) stdout ---- [INFO] [stdout] Couldn't compile the test. [INFO] [stdout] ---- src/directive/genome_build.rs - directive::genome_build::GenomeBuild::name (line 44) stdout ---- [INFO] [stdout] Couldn't compile the test. [INFO] [stdout] ---- src/record/builder.rs - record::builder::Builder::set_reference_sequence_name (line 36) stdout ---- [INFO] [stdout] Couldn't compile the test. [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] src/directive/genome_build.rs - directive::genome_build::GenomeBuild::name (line 44) [INFO] [stdout] src/directive/gff_version.rs - directive::gff_version::GffVersion::minor (line 38) [INFO] [stdout] src/reader.rs - reader::Reader::into_inner (line 55) [INFO] [stdout] src/reader.rs - reader::Reader::lines (line 113) [INFO] [stdout] src/reader.rs - reader::Reader::read_line (line 86) [INFO] [stdout] src/reader.rs - reader::Reader::records (line 143) [INFO] [stdout] src/record/builder.rs - record::builder::Builder::set_attributes (line 164) [INFO] [stdout] src/record/builder.rs - record::builder::Builder::set_reference_sequence_name (line 36) [INFO] [stdout] src/writer.rs - writer::Writer::write_directive (line 43) [INFO] [stdout] src/writer.rs - writer::Writer::write_record (line 63) [INFO] [stdout] [INFO] [stdout] test result: FAILED. 35 passed; 10 failed; 0 ignored; 0 measured; 0 filtered out; finished in 16.72s [INFO] [stdout] [INFO] [stderr] error: test failed, to rerun pass '--doc' [INFO] running `Command { std: "docker" "inspect" "280cbd5c3764a8fcf28176b90e063db3667624e566c695872ef2733b43d160c2", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "280cbd5c3764a8fcf28176b90e063db3667624e566c695872ef2733b43d160c2", kill_on_drop: false }` [INFO] [stdout] 280cbd5c3764a8fcf28176b90e063db3667624e566c695872ef2733b43d160c2