[INFO] fetching crate global-supertrees 0.1.0... [INFO] testing global-supertrees-0.1.0 against master#62efba8a050c64249dab942951bb28f710208bc8 for pr-90799 [INFO] extracting crate global-supertrees 0.1.0 into /workspace/builds/worker-116/source [INFO] validating manifest of crates.io crate global-supertrees 0.1.0 on toolchain 62efba8a050c64249dab942951bb28f710208bc8 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+62efba8a050c64249dab942951bb28f710208bc8" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate global-supertrees 0.1.0 [INFO] finished tweaking crates.io crate global-supertrees 0.1.0 [INFO] tweaked toml for crates.io crate global-supertrees 0.1.0 written to /workspace/builds/worker-116/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+62efba8a050c64249dab942951bb28f710208bc8" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+62efba8a050c64249dab942951bb28f710208bc8" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-116/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-116/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+62efba8a050c64249dab942951bb28f710208bc8" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] a3d2fcd85a0eb76565c073adeb04ccf4885d55a941d8b28fa9cb8354d03926c8 [INFO] running `Command { std: "docker" "start" "-a" "a3d2fcd85a0eb76565c073adeb04ccf4885d55a941d8b28fa9cb8354d03926c8", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "a3d2fcd85a0eb76565c073adeb04ccf4885d55a941d8b28fa9cb8354d03926c8", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "a3d2fcd85a0eb76565c073adeb04ccf4885d55a941d8b28fa9cb8354d03926c8", kill_on_drop: false }` [INFO] [stdout] a3d2fcd85a0eb76565c073adeb04ccf4885d55a941d8b28fa9cb8354d03926c8 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-116/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-116/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+62efba8a050c64249dab942951bb28f710208bc8" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 19b90362a5c9df017df6ac3aca940977089e0cb9db31baae412be51379f5155d [INFO] running `Command { std: "docker" "start" "-a" "19b90362a5c9df017df6ac3aca940977089e0cb9db31baae412be51379f5155d", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling crossbeam-utils v0.8.5 [INFO] [stderr] Compiling proc-macro2 v1.0.32 [INFO] [stderr] Compiling unicode-xid v0.2.2 [INFO] [stderr] Compiling syn v1.0.82 [INFO] [stderr] Compiling crossbeam-epoch v0.9.5 [INFO] [stderr] Compiling rayon-core v1.9.1 [INFO] [stderr] Compiling serde_derive v1.0.130 [INFO] [stderr] Compiling matrixmultiply v0.1.15 [INFO] [stderr] Compiling serde v1.0.130 [INFO] [stderr] Compiling rawpointer v0.1.0 [INFO] [stderr] Compiling ndarray v0.12.1 [INFO] [stderr] Compiling fixedbitset v0.1.9 [INFO] [stderr] Compiling ordermap v0.3.5 [INFO] [stderr] Compiling regex-syntax v0.6.25 [INFO] [stderr] Compiling memoffset v0.6.4 [INFO] [stderr] Compiling num-traits v0.2.14 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling rayon v1.5.1 [INFO] [stderr] Compiling itertools v0.7.11 [INFO] [stderr] Compiling aho-corasick v0.7.18 [INFO] [stderr] Compiling petgraph v0.4.13 [INFO] [stderr] Compiling crossbeam-channel v0.5.1 [INFO] [stderr] Compiling crossbeam-deque v0.8.1 [INFO] [stderr] Compiling quote v1.0.10 [INFO] [stderr] Compiling regex v1.5.4 [INFO] [stderr] Compiling bincode v1.3.3 [INFO] [stderr] Compiling global-supertrees v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/utils.rs:54:92 [INFO] [stdout] | [INFO] [stdout] 54 | pub fn cache_mapping(mapping : &BTreeMap<[u8; 10], u32>, path : &String) -> Result<(), Box> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/utils.rs:61:82 [INFO] [stdout] | [INFO] [stdout] 61 | pub fn load_cache_mapping(path : &String) -> Result, Box> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] | [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `rayon::prelude` [INFO] [stdout] --> src/tree_merging.rs:2:5 [INFO] [stdout] | [INFO] [stdout] 2 | use rayon::prelude::*; [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `trees` [INFO] [stdout] --> src/main.rs:98:9 [INFO] [stdout] | [INFO] [stdout] 98 | let trees : Vec = distance_matrices.par_iter().map(| dm | dm.neighbour_joining()).collect(); [INFO] [stdout] | ^^^^^ help: if this is intentional, prefix it with an underscore: `_trees` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `distance_matrices` [INFO] [stdout] --> src/tree_merging.rs:10:9 [INFO] [stdout] | [INFO] [stdout] 10 | let distance_matrices: Vec = [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_distance_matrices` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `merge_distance_matrices` [INFO] [stdout] --> src/tree_merging.rs:102:4 [INFO] [stdout] | [INFO] [stdout] 102 | fn merge_distance_matrices(dms: Vec) -> TreeDistanceMatrix { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 6 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 18.35s [INFO] running `Command { std: "docker" "inspect" "19b90362a5c9df017df6ac3aca940977089e0cb9db31baae412be51379f5155d", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "19b90362a5c9df017df6ac3aca940977089e0cb9db31baae412be51379f5155d", kill_on_drop: false }` [INFO] [stdout] 19b90362a5c9df017df6ac3aca940977089e0cb9db31baae412be51379f5155d [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-116/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-116/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+62efba8a050c64249dab942951bb28f710208bc8" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] d69d4dea907c8a023f164f560a6cc9bab97ecc6d3d7a8578e102b011b777f750 [INFO] running `Command { std: "docker" "start" "-a" "d69d4dea907c8a023f164f560a6cc9bab97ecc6d3d7a8578e102b011b777f750", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling global-supertrees v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/utils.rs:54:92 [INFO] [stdout] | [INFO] [stdout] 54 | pub fn cache_mapping(mapping : &BTreeMap<[u8; 10], u32>, path : &String) -> Result<(), Box> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/utils.rs:61:82 [INFO] [stdout] | [INFO] [stdout] 61 | pub fn load_cache_mapping(path : &String) -> Result, Box> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] | [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `rayon::prelude` [INFO] [stdout] --> src/tree_merging.rs:2:5 [INFO] [stdout] | [INFO] [stdout] 2 | use rayon::prelude::*; [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `trees` [INFO] [stdout] --> src/main.rs:98:9 [INFO] [stdout] | [INFO] [stdout] 98 | let trees : Vec = distance_matrices.par_iter().map(| dm | dm.neighbour_joining()).collect(); [INFO] [stdout] | ^^^^^ help: if this is intentional, prefix it with an underscore: `_trees` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `distance_matrices` [INFO] [stdout] --> src/tree_merging.rs:10:9 [INFO] [stdout] | [INFO] [stdout] 10 | let distance_matrices: Vec = [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_distance_matrices` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `merge_distance_matrices` [INFO] [stdout] --> src/tree_merging.rs:102:4 [INFO] [stdout] | [INFO] [stdout] 102 | fn merge_distance_matrices(dms: Vec) -> TreeDistanceMatrix { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 6 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 6.87s [INFO] running `Command { std: "docker" "inspect" "d69d4dea907c8a023f164f560a6cc9bab97ecc6d3d7a8578e102b011b777f750", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "d69d4dea907c8a023f164f560a6cc9bab97ecc6d3d7a8578e102b011b777f750", kill_on_drop: false }` [INFO] [stdout] d69d4dea907c8a023f164f560a6cc9bab97ecc6d3d7a8578e102b011b777f750 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-116/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-116/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+62efba8a050c64249dab942951bb28f710208bc8" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] a8f9664e74c382d41ec37eb9faa24ea51b09564da63781ec3613005dbc371999 [INFO] running `Command { std: "docker" "start" "-a" "a8f9664e74c382d41ec37eb9faa24ea51b09564da63781ec3613005dbc371999", kill_on_drop: false }` [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/utils.rs:54:92 [INFO] [stderr] | [INFO] [stderr] 54 | pub fn cache_mapping(mapping : &BTreeMap<[u8; 10], u32>, path : &String) -> Result<(), Box> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stderr] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stderr] = note: for more information, see [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/utils.rs:61:82 [INFO] [stderr] | [INFO] [stderr] 61 | pub fn load_cache_mapping(path : &String) -> Result, Box> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] | [INFO] [stderr] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stderr] = note: for more information, see [INFO] [stderr] [INFO] [stderr] warning: unused import: `rayon::prelude` [INFO] [stderr] --> src/tree_merging.rs:2:5 [INFO] [stderr] | [INFO] [stderr] 2 | use rayon::prelude::*; [INFO] [stderr] | ^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` on by default [INFO] [stderr] [INFO] [stderr] warning: unused variable: `trees` [INFO] [stderr] --> src/main.rs:98:9 [INFO] [stderr] | [INFO] [stderr] 98 | let trees : Vec = distance_matrices.par_iter().map(| dm | dm.neighbour_joining()).collect(); [INFO] [stderr] | ^^^^^ help: if this is intentional, prefix it with an underscore: `_trees` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_variables)]` on by default [INFO] [stderr] [INFO] [stderr] warning: unused variable: `distance_matrices` [INFO] [stderr] --> src/tree_merging.rs:10:9 [INFO] [stderr] | [INFO] [stderr] 10 | let distance_matrices: Vec = [INFO] [stderr] | ^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_distance_matrices` [INFO] [stderr] [INFO] [stderr] warning: function is never used: `merge_distance_matrices` [INFO] [stderr] --> src/tree_merging.rs:102:4 [INFO] [stderr] | [INFO] [stderr] 102 | fn merge_distance_matrices(dms: Vec) -> TreeDistanceMatrix { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(dead_code)]` on by default [INFO] [stderr] [INFO] [stderr] warning: `global-supertrees` (bin "global-supertrees" test) generated 6 warnings [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.07s [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/global_supertrees-3cefaf178d6213ee) [INFO] [stdout] [INFO] [stdout] running 16 tests [INFO] [stdout] test test_tree_parsing::tests::test_construct_tree_from_file_3 ... ok [INFO] [stdout] test test_tree_parsing::tests::test_construct_tree_from_file_2 ... ok [INFO] [stdout] test test_tree_parsing::tests::test_construct_tree_from_file_1 ... ok [INFO] [stdout] test tests::tests::test_find_first_common_ancestor ... ok [INFO] [stdout] test tests::tests::test_find_first_zero ... ok [INFO] [stdout] test tests::tests::test_load_tree_file ... ok [INFO] [stdout] test tests::tests::test_get_levels_from_root ... ok [INFO] [stdout] test tests::tests::test_to_dot ... ok [INFO] [stdout] test tests::tests::test_batch_id_tax_mapping ... FAILED [INFO] [stdout] test tests::tests::test_merge_organisms ... FAILED [INFO] [stdout] test tests::tests::test_to_distance_matrix_medium ... ok [INFO] [stdout] test tests::tests::test_get_partial_tree ... ok [INFO] [stdout] test tests::tests::test_to_distance_matrix_medium_nested ... ok [INFO] [stdout] test tests::tests::test_to_distance_matrix_simple ... ok [INFO] [stdout] test tests::tests::test_neighbour_joining ... ok [INFO] [stdout] test tests::tests::test_tree_merging ... ok [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] [INFO] [stdout] ---- tests::tests::test_batch_id_tax_mapping stdout ---- [INFO] [stdout] thread 'tests::tests::test_batch_id_tax_mapping' panicked at 'file not found: Os { code: 2, kind: NotFound, message: "No such file or directory" }', src/uniprot.rs:34:34 [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x557fc5c3e76c - std::backtrace_rs::backtrace::libunwind::trace::h793e05efd273d0f4 [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/../../backtrace/src/backtrace/libunwind.rs:93:5 [INFO] [stdout] 1: 0x557fc5c3e76c - std::backtrace_rs::backtrace::trace_unsynchronized::h640b7b86ff610c77 [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stdout] 2: 0x557fc5c3e76c - std::sys_common::backtrace::_print_fmt::h362fa2a4f354f877 [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stdout] 3: 0x557fc5c3e76c - ::fmt::hf439e5ed84c74abd [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stdout] 4: 0x557fc5c6343c - core::fmt::write::h72801a82c94e6ff1 [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/core/src/fmt/mod.rs:1149:17 [INFO] [stdout] 5: 0x557fc5c3a435 - std::io::Write::write_fmt::h54337adeb3504c03 [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/io/mod.rs:1697:15 [INFO] [stdout] 6: 0x557fc5c40210 - std::sys_common::backtrace::_print::hb29ddd998d02631c [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stdout] 7: 0x557fc5c40210 - std::sys_common::backtrace::print::h81965e3d7c90fbb6 [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stdout] 8: 0x557fc5c40210 - std::panicking::default_hook::{{closure}}::h84db205ab6674b38 [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/panicking.rs:211:50 [INFO] [stdout] 9: 0x557fc5c3fdf6 - std::panicking::default_hook::h1bf8bb4159936bca [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/panicking.rs:225:9 [INFO] [stdout] 10: 0x557fc5c408c4 - std::panicking::rust_panic_with_hook::hf8e86850fbbd03b1 [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/panicking.rs:606:17 [INFO] [stdout] 11: 0x557fc5c403a0 - std::panicking::begin_panic_handler::{{closure}}::h590a0d6060ff866e [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/panicking.rs:502:13 [INFO] [stdout] 12: 0x557fc5c3ec24 - std::sys_common::backtrace::__rust_end_short_backtrace::h260b8bd1c848a03c [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/sys_common/backtrace.rs:139:18 [INFO] [stdout] 13: 0x557fc5c40309 - rust_begin_unwind [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/panicking.rs:498:5 [INFO] [stdout] 14: 0x557fc58fed81 - core::panicking::panic_fmt::h7b8580d81fcbbacd [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/core/src/panicking.rs:106:14 [INFO] [stdout] 15: 0x557fc58fee73 - core::result::unwrap_failed::h885d3f7beb571353 [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/core/src/result.rs:1613:5 [INFO] [stdout] 16: 0x557fc5944fbf - core::result::Result::expect::h497a64d94ae155e9 [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/core/src/result.rs:1255:23 [INFO] [stdout] 17: 0x557fc5972718 - global_supertrees::uniprot::load_mapping_file::h746253bde655b800 [INFO] [stdout] at /opt/rustwide/workdir/src/uniprot.rs:34:13 [INFO] [stdout] 18: 0x557fc5967785 - global_supertrees::tests::tests::test_batch_id_tax_mapping::h78ef09de37030a3b [INFO] [stdout] at /opt/rustwide/workdir/src/tests.rs:230:26 [INFO] [stdout] 19: 0x557fc596763a - global_supertrees::tests::tests::test_batch_id_tax_mapping::{{closure}}::h012ece781c81bdb1 [INFO] [stdout] at /opt/rustwide/workdir/src/tests.rs:227:5 [INFO] [stdout] 20: 0x557fc59b411e - core::ops::function::FnOnce::call_once::hb313b47803005ef0 [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 21: 0x557fc59fccb3 - core::ops::function::FnOnce::call_once::h24a32b9da1a40fdb [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 22: 0x557fc59fccb3 - test::__rust_begin_short_backtrace::h3c3a0492fb4a12eb [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/test/src/lib.rs:585:5 [INFO] [stdout] 23: 0x557fc59fb8c7 - as core::ops::function::FnOnce>::call_once::h9a8e38435f73d5e0 [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/alloc/src/boxed.rs:1694:9 [INFO] [stdout] 24: 0x557fc59fb8c7 - as core::ops::function::FnOnce<()>>::call_once::hb23d7496a0e6d1b4 [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/core/src/panic/unwind_safe.rs:271:9 [INFO] [stdout] 25: 0x557fc59fb8c7 - std::panicking::try::do_call::ha2bb9825b32d2cc2 [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/panicking.rs:406:40 [INFO] [stdout] 26: 0x557fc59fb8c7 - std::panicking::try::hdc38a574bbebc53e [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/panicking.rs:370:19 [INFO] [stdout] 27: 0x557fc59fb8c7 - std::panic::catch_unwind::hc45ed246595c621c [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/panic.rs:133:14 [INFO] [stdout] 28: 0x557fc59fb8c7 - test::run_test_in_process::h4249138faaea8d54 [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/test/src/lib.rs:608:18 [INFO] [stdout] 29: 0x557fc59fb8c7 - test::run_test::run_test_inner::{{closure}}::h3c1b37669f6e9fd7 [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/test/src/lib.rs:500:39 [INFO] [stdout] 30: 0x557fc59c8b6e - test::run_test::run_test_inner::{{closure}}::h388760469edd5c24 [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/test/src/lib.rs:527:37 [INFO] [stdout] 31: 0x557fc59c8b6e - std::sys_common::backtrace::__rust_begin_short_backtrace::hbbaecdcfad18643e [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/sys_common/backtrace.rs:123:18 [INFO] [stdout] 32: 0x557fc59cd8c8 - std::thread::Builder::spawn_unchecked::{{closure}}::{{closure}}::h09cd3ca65896da91 [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/thread/mod.rs:484:17 [INFO] [stdout] 33: 0x557fc59cd8c8 - as core::ops::function::FnOnce<()>>::call_once::hc52dbb4f9088d18b [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/core/src/panic/unwind_safe.rs:271:9 [INFO] [stdout] 34: 0x557fc59cd8c8 - std::panicking::try::do_call::h4485cfee22b11c08 [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/panicking.rs:406:40 [INFO] [stdout] 35: 0x557fc59cd8c8 - std::panicking::try::hb62aa8549e20c08b [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/panicking.rs:370:19 [INFO] [stdout] 36: 0x557fc59cd8c8 - std::panic::catch_unwind::ha322c7a5bc666762 [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/panic.rs:133:14 [INFO] [stdout] 37: 0x557fc59cd8c8 - std::thread::Builder::spawn_unchecked::{{closure}}::h1076fc1398603b77 [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/thread/mod.rs:483:30 [INFO] [stdout] 38: 0x557fc59cd8c8 - core::ops::function::FnOnce::call_once{{vtable.shim}}::h911e510344167353 [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 39: 0x557fc5c454d3 - as core::ops::function::FnOnce>::call_once::h771719d52c343434 [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/alloc/src/boxed.rs:1694:9 [INFO] [stdout] 40: 0x557fc5c454d3 - as core::ops::function::FnOnce>::call_once::hf441746dfa4b0f57 [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/alloc/src/boxed.rs:1694:9 [INFO] [stdout] 41: 0x557fc5c454d3 - std::sys::unix::thread::Thread::new::thread_start::hfd168f9d312b29ca [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/sys/unix/thread.rs:106:17 [INFO] [stdout] 42: 0x7ff2086c5609 - start_thread [INFO] [stdout] 43: 0x7ff208497293 - clone [INFO] [stdout] 44: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- tests::tests::test_merge_organisms stdout ---- [INFO] [stdout] thread 'tests::tests::test_merge_organisms' panicked at 'file not found: Os { code: 2, kind: NotFound, message: "No such file or directory" }', src/uniprot.rs:34:34 [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x557fc5c3e76c - std::backtrace_rs::backtrace::libunwind::trace::h793e05efd273d0f4 [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/../../backtrace/src/backtrace/libunwind.rs:93:5 [INFO] [stdout] 1: 0x557fc5c3e76c - std::backtrace_rs::backtrace::trace_unsynchronized::h640b7b86ff610c77 [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stdout] 2: 0x557fc5c3e76c - std::sys_common::backtrace::_print_fmt::h362fa2a4f354f877 [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stdout] 3: 0x557fc5c3e76c - ::fmt::hf439e5ed84c74abd [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stdout] 4: 0x557fc5c6343c - core::fmt::write::h72801a82c94e6ff1 [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/core/src/fmt/mod.rs:1149:17 [INFO] [stdout] 5: 0x557fc5c3a435 - std::io::Write::write_fmt::h54337adeb3504c03 [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/io/mod.rs:1697:15 [INFO] [stdout] 6: 0x557fc5c40210 - std::sys_common::backtrace::_print::hb29ddd998d02631c [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stdout] 7: 0x557fc5c40210 - std::sys_common::backtrace::print::h81965e3d7c90fbb6 [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stdout] 8: 0x557fc5c40210 - std::panicking::default_hook::{{closure}}::h84db205ab6674b38 [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/panicking.rs:211:50 [INFO] [stdout] 9: 0x557fc5c3fdf6 - std::panicking::default_hook::h1bf8bb4159936bca [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/panicking.rs:225:9 [INFO] [stdout] 10: 0x557fc5c408c4 - std::panicking::rust_panic_with_hook::hf8e86850fbbd03b1 [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/panicking.rs:606:17 [INFO] [stdout] 11: 0x557fc5c403a0 - std::panicking::begin_panic_handler::{{closure}}::h590a0d6060ff866e [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/panicking.rs:502:13 [INFO] [stdout] 12: 0x557fc5c3ec24 - std::sys_common::backtrace::__rust_end_short_backtrace::h260b8bd1c848a03c [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/sys_common/backtrace.rs:139:18 [INFO] [stdout] 13: 0x557fc5c40309 - rust_begin_unwind [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/panicking.rs:498:5 [INFO] [stdout] 14: 0x557fc58fed81 - core::panicking::panic_fmt::h7b8580d81fcbbacd [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/core/src/panicking.rs:106:14 [INFO] [stdout] 15: 0x557fc58fee73 - core::result::unwrap_failed::h885d3f7beb571353 [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/core/src/result.rs:1613:5 [INFO] [stdout] 16: 0x557fc5944fbf - core::result::Result::expect::h497a64d94ae155e9 [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/core/src/result.rs:1255:23 [INFO] [stdout] 17: 0x557fc5972718 - global_supertrees::uniprot::load_mapping_file::h746253bde655b800 [INFO] [stdout] at /opt/rustwide/workdir/src/uniprot.rs:34:13 [INFO] [stdout] 18: 0x557fc59679fa - global_supertrees::tests::tests::test_merge_organisms::hf3e03f48e975d1e2 [INFO] [stdout] at /opt/rustwide/workdir/src/tests.rs:237:26 [INFO] [stdout] 19: 0x557fc59679aa - global_supertrees::tests::tests::test_merge_organisms::{{closure}}::ha8d5f3223bc0eb90 [INFO] [stdout] at /opt/rustwide/workdir/src/tests.rs:235:5 [INFO] [stdout] 20: 0x557fc59b431e - core::ops::function::FnOnce::call_once::he2b7aa3e26a96e73 [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 21: 0x557fc59fccb3 - core::ops::function::FnOnce::call_once::h24a32b9da1a40fdb [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 22: 0x557fc59fccb3 - test::__rust_begin_short_backtrace::h3c3a0492fb4a12eb [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/test/src/lib.rs:585:5 [INFO] [stdout] 23: 0x557fc59fb8c7 - as core::ops::function::FnOnce>::call_once::h9a8e38435f73d5e0 [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/alloc/src/boxed.rs:1694:9 [INFO] [stdout] 24: 0x557fc59fb8c7 - as core::ops::function::FnOnce<()>>::call_once::hb23d7496a0e6d1b4 [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/core/src/panic/unwind_safe.rs:271:9 [INFO] [stdout] 25: 0x557fc59fb8c7 - std::panicking::try::do_call::ha2bb9825b32d2cc2 [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/panicking.rs:406:40 [INFO] [stdout] 26: 0x557fc59fb8c7 - std::panicking::try::hdc38a574bbebc53e [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/panicking.rs:370:19 [INFO] [stdout] 27: 0x557fc59fb8c7 - std::panic::catch_unwind::hc45ed246595c621c [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/panic.rs:133:14 [INFO] [stdout] 28: 0x557fc59fb8c7 - test::run_test_in_process::h4249138faaea8d54 [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/test/src/lib.rs:608:18 [INFO] [stdout] 29: 0x557fc59fb8c7 - test::run_test::run_test_inner::{{closure}}::h3c1b37669f6e9fd7 [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/test/src/lib.rs:500:39 [INFO] [stdout] 30: 0x557fc59c8b6e - test::run_test::run_test_inner::{{closure}}::h388760469edd5c24 [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/test/src/lib.rs:527:37 [INFO] [stdout] 31: 0x557fc59c8b6e - std::sys_common::backtrace::__rust_begin_short_backtrace::hbbaecdcfad18643e [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/sys_common/backtrace.rs:123:18 [INFO] [stdout] 32: 0x557fc59cd8c8 - std::thread::Builder::spawn_unchecked::{{closure}}::{{closure}}::h09cd3ca65896da91 [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/thread/mod.rs:484:17 [INFO] [stdout] 33: 0x557fc59cd8c8 - as core::ops::function::FnOnce<()>>::call_once::hc52dbb4f9088d18b [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/core/src/panic/unwind_safe.rs:271:9 [INFO] [stdout] 34: 0x557fc59cd8c8 - std::panicking::try::do_call::h4485cfee22b11c08 [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/panicking.rs:406:40 [INFO] [stdout] 35: 0x557fc59cd8c8 - std::panicking::try::hb62aa8549e20c08b [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/panicking.rs:370:19 [INFO] [stdout] 36: 0x557fc59cd8c8 - std::panic::catch_unwind::ha322c7a5bc666762 [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/panic.rs:133:14 [INFO] [stdout] 37: 0x557fc59cd8c8 - std::thread::Builder::spawn_unchecked::{{closure}}::h1076fc1398603b77 [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/thread/mod.rs:483:30 [INFO] [stdout] 38: 0x557fc59cd8c8 - core::ops::function::FnOnce::call_once{{vtable.shim}}::h911e510344167353 [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 39: 0x557fc5c454d3 - as core::ops::function::FnOnce>::call_once::h771719d52c343434 [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/alloc/src/boxed.rs:1694:9 [INFO] [stdout] 40: 0x557fc5c454d3 - as core::ops::function::FnOnce>::call_once::hf441746dfa4b0f57 [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/alloc/src/boxed.rs:1694:9 [INFO] [stdout] 41: 0x557fc5c454d3 - std::sys::unix::thread::Thread::new::thread_start::hfd168f9d312b29ca [INFO] [stdout] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/sys/unix/thread.rs:106:17 [INFO] [stdout] 42: 0x7ff2086c5609 - start_thread [INFO] [stdout] 43: 0x7ff208497293 - clone [INFO] [stdout] 44: 0x0 - [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] tests::tests::test_batch_id_tax_mapping [INFO] [stdout] tests::tests::test_merge_organisms [INFO] [stdout] [INFO] [stdout] test result: FAILED. 14 passed; 2 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.37s [INFO] [stdout] [INFO] [stderr] error: test failed, to rerun pass '--bin global-supertrees' [INFO] running `Command { std: "docker" "inspect" "a8f9664e74c382d41ec37eb9faa24ea51b09564da63781ec3613005dbc371999", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "a8f9664e74c382d41ec37eb9faa24ea51b09564da63781ec3613005dbc371999", kill_on_drop: false }` [INFO] [stdout] a8f9664e74c382d41ec37eb9faa24ea51b09564da63781ec3613005dbc371999