[INFO] fetching crate gkl 0.1.0...
[INFO] testing gkl-0.1.0 against master#62efba8a050c64249dab942951bb28f710208bc8 for pr-90799
[INFO] extracting crate gkl 0.1.0 into /workspace/builds/worker-106/source
[INFO] validating manifest of crates.io crate gkl 0.1.0 on toolchain 62efba8a050c64249dab942951bb28f710208bc8
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+62efba8a050c64249dab942951bb28f710208bc8" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate gkl 0.1.0
[INFO] finished tweaking crates.io crate gkl 0.1.0
[INFO] tweaked toml for crates.io crate gkl 0.1.0 written to /workspace/builds/worker-106/source/Cargo.toml
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+62efba8a050c64249dab942951bb28f710208bc8" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }`
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+62efba8a050c64249dab942951bb28f710208bc8" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-106/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-106/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+62efba8a050c64249dab942951bb28f710208bc8" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] fac71370737ee945aa5cb9315280773f1a9f8834bb78147f3db7919d912566f0
[INFO] running `Command { std: "docker" "start" "-a" "fac71370737ee945aa5cb9315280773f1a9f8834bb78147f3db7919d912566f0", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "fac71370737ee945aa5cb9315280773f1a9f8834bb78147f3db7919d912566f0", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "fac71370737ee945aa5cb9315280773f1a9f8834bb78147f3db7919d912566f0", kill_on_drop: false }`
[INFO] [stdout] fac71370737ee945aa5cb9315280773f1a9f8834bb78147f3db7919d912566f0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-106/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-106/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+62efba8a050c64249dab942951bb28f710208bc8" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] c1c6c3efb469cadcea2fd1821f16a82452462120f0083fa6bba67c2f3018e998
[INFO] running `Command { std: "docker" "start" "-a" "c1c6c3efb469cadcea2fd1821f16a82452462120f0083fa6bba67c2f3018e998", kill_on_drop: false }`
[INFO] [stderr]    Compiling cc v1.0.72
[INFO] [stderr]    Compiling gkl v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 7.43s
[INFO] running `Command { std: "docker" "inspect" "c1c6c3efb469cadcea2fd1821f16a82452462120f0083fa6bba67c2f3018e998", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "c1c6c3efb469cadcea2fd1821f16a82452462120f0083fa6bba67c2f3018e998", kill_on_drop: false }`
[INFO] [stdout] c1c6c3efb469cadcea2fd1821f16a82452462120f0083fa6bba67c2f3018e998
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-106/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-106/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+62efba8a050c64249dab942951bb28f710208bc8" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 9301a288ac561072e8f30e17cb24a1d1ecffca3a971dd9de3ce6f67279b3dbfe
[INFO] running `Command { std: "docker" "start" "-a" "9301a288ac561072e8f30e17cb24a1d1ecffca3a971dd9de3ce6f67279b3dbfe", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]    Compiling gkl v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 1.10s
[INFO] running `Command { std: "docker" "inspect" "9301a288ac561072e8f30e17cb24a1d1ecffca3a971dd9de3ce6f67279b3dbfe", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "9301a288ac561072e8f30e17cb24a1d1ecffca3a971dd9de3ce6f67279b3dbfe", kill_on_drop: false }`
[INFO] [stdout] 9301a288ac561072e8f30e17cb24a1d1ecffca3a971dd9de3ce6f67279b3dbfe
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-106/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-106/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+62efba8a050c64249dab942951bb28f710208bc8" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] d702d5435ff78a91a42408b07448e4e322dad1f686f356d7a9556f8608916527
[INFO] running `Command { std: "docker" "start" "-a" "d702d5435ff78a91a42408b07448e4e322dad1f686f356d7a9556f8608916527", kill_on_drop: false }`
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 0.13s
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/gkl-a82d2e503e87cd90)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/pairhmm.rs (/opt/rustwide/target/debug/deps/pairhmm-bb2e2694fd0b19ec)
[INFO] [stdout] 
[INFO] [stdout] running 2 tests
[INFO] [stdout] test simple ... ok
[INFO] [stdout] test data_file ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 2 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.16s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/smithwaterman.rs (/opt/rustwide/target/debug/deps/smithwaterman-b24e6ffbee0d7b94)
[INFO] [stdout] 
[INFO] [stdout] running 9 tests
[INFO] [stdout] test degenerate_alignment_with_indels_at_both_ends ... ok
[INFO] [stdout] test indels_at_start_and_end ... ok
[INFO] [stdout] test odd_no_alignment ... ok
[INFO] [stdout] test identical_alignments_with_differing_flank_lengths ... ok
[INFO] [stdout] test read_aligned_to_ref_complex_alignment ... ok
[INFO] [stdout] test single_element ... ok
[INFO] [stdout] test substring_match ... ok
[INFO] [stdout] test two_element ... ok
[INFO] [stdout] test substring_match_long ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 9 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.11s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests gkl
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "d702d5435ff78a91a42408b07448e4e322dad1f686f356d7a9556f8608916527", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "d702d5435ff78a91a42408b07448e4e322dad1f686f356d7a9556f8608916527", kill_on_drop: false }`
[INFO] [stdout] d702d5435ff78a91a42408b07448e4e322dad1f686f356d7a9556f8608916527