[INFO] fetching crate checkm 0.1.1...
[INFO] testing checkm-0.1.1 against master#62efba8a050c64249dab942951bb28f710208bc8 for pr-90799
[INFO] extracting crate checkm 0.1.1 into /workspace/builds/worker-6/source
[INFO] validating manifest of crates.io crate checkm 0.1.1 on toolchain 62efba8a050c64249dab942951bb28f710208bc8
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+62efba8a050c64249dab942951bb28f710208bc8" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate checkm 0.1.1
[INFO] finished tweaking crates.io crate checkm 0.1.1
[INFO] tweaked toml for crates.io crate checkm 0.1.1 written to /workspace/builds/worker-6/source/Cargo.toml
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+62efba8a050c64249dab942951bb28f710208bc8" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }`
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+62efba8a050c64249dab942951bb28f710208bc8" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+62efba8a050c64249dab942951bb28f710208bc8" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 3dfd2dd4ddcc21d1d5dffcb9f2a92df71410a86d2d7323a474ea404d88a67461
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "3dfd2dd4ddcc21d1d5dffcb9f2a92df71410a86d2d7323a474ea404d88a67461", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "3dfd2dd4ddcc21d1d5dffcb9f2a92df71410a86d2d7323a474ea404d88a67461", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "3dfd2dd4ddcc21d1d5dffcb9f2a92df71410a86d2d7323a474ea404d88a67461", kill_on_drop: false }`
[INFO] [stdout] 3dfd2dd4ddcc21d1d5dffcb9f2a92df71410a86d2d7323a474ea404d88a67461
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+62efba8a050c64249dab942951bb28f710208bc8" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 2ea18d2bd981fb1830f3bcb00befb02f40707469145bff349eae5b832c3d0427
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "2ea18d2bd981fb1830f3bcb00befb02f40707469145bff349eae5b832c3d0427", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]    Compiling memchr v2.4.1
[INFO] [stderr]    Compiling serde v1.0.130
[INFO] [stderr]    Compiling log v0.4.14
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling itoa v0.4.8
[INFO] [stderr]    Compiling termcolor v1.1.2
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling humantime v1.3.0
[INFO] [stderr]    Compiling aho-corasick v0.7.18
[INFO] [stderr]    Compiling csv-core v0.1.10
[INFO] [stderr]    Compiling regex v1.5.4
[INFO] [stderr]    Compiling env_logger v0.7.1
[INFO] [stderr]    Compiling bstr v0.2.17
[INFO] [stderr]    Compiling csv v1.1.6
[INFO] [stderr]    Compiling checkm v0.1.1 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 22.74s
[INFO] running `Command { std: "docker" "inspect" "2ea18d2bd981fb1830f3bcb00befb02f40707469145bff349eae5b832c3d0427", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "2ea18d2bd981fb1830f3bcb00befb02f40707469145bff349eae5b832c3d0427", kill_on_drop: false }`
[INFO] [stdout] 2ea18d2bd981fb1830f3bcb00befb02f40707469145bff349eae5b832c3d0427
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+62efba8a050c64249dab942951bb28f710208bc8" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 574126fb485cb745e305c24c2169a46cd2f49b227213e62b4f0f7a6600b310c7
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "574126fb485cb745e305c24c2169a46cd2f49b227213e62b4f0f7a6600b310c7", kill_on_drop: false }`
[INFO] [stderr]    Compiling checkm v0.1.1 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 3.39s
[INFO] running `Command { std: "docker" "inspect" "574126fb485cb745e305c24c2169a46cd2f49b227213e62b4f0f7a6600b310c7", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "574126fb485cb745e305c24c2169a46cd2f49b227213e62b4f0f7a6600b310c7", kill_on_drop: false }`
[INFO] [stdout] 574126fb485cb745e305c24c2169a46cd2f49b227213e62b4f0f7a6600b310c7
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+62efba8a050c64249dab942951bb28f710208bc8" "test" "--frozen", kill_on_drop: false }`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] 43eb03c6c6f397782df65ce0878604a36b8ff9e74923a3c1e82726fed779d651
[INFO] running `Command { std: "docker" "start" "-a" "43eb03c6c6f397782df65ce0878604a36b8ff9e74923a3c1e82726fed779d651", kill_on_drop: false }`
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 0.04s
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/checkm-dd30c10f8a6d40cf)
[INFO] [stdout] 
[INFO] [stdout] running 7 tests
[INFO] [stdout] test test::test_absolute_path_retrieval ... ok
[INFO] [stdout] test test::test_retrieve ... ok
[INFO] [stdout] test test::test_ordering_5times ... ok
[INFO] [stdout] test test::test_good_quality_genome_names ... ok
[INFO] [stdout] test test::test_fasta_ordering_4times_min_completeness ... ok
[INFO] [stdout] test test::test_ordering_4times ... ok
[INFO] [stdout] test test::test_fasta_ordering_4times ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 7 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests checkm
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "43eb03c6c6f397782df65ce0878604a36b8ff9e74923a3c1e82726fed779d651", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "43eb03c6c6f397782df65ce0878604a36b8ff9e74923a3c1e82726fed779d651", kill_on_drop: false }`
[INFO] [stdout] 43eb03c6c6f397782df65ce0878604a36b8ff9e74923a3c1e82726fed779d651