[INFO] fetching crate bio-types 0.12.1...
[INFO] testing bio-types-0.12.1 against master#62efba8a050c64249dab942951bb28f710208bc8 for pr-90799
[INFO] extracting crate bio-types 0.12.1 into /workspace/builds/worker-0/source
[INFO] validating manifest of crates.io crate bio-types 0.12.1 on toolchain 62efba8a050c64249dab942951bb28f710208bc8
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+62efba8a050c64249dab942951bb28f710208bc8" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate bio-types 0.12.1
[INFO] finished tweaking crates.io crate bio-types 0.12.1
[INFO] tweaked toml for crates.io crate bio-types 0.12.1 written to /workspace/builds/worker-0/source/Cargo.toml
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+62efba8a050c64249dab942951bb28f710208bc8" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+62efba8a050c64249dab942951bb28f710208bc8" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr] warning: only one of `license` or `license-file` is necessary
[INFO] [stderr] `license` should be used if the package license can be expressed with a standard SPDX expression.
[INFO] [stderr] `license-file` should be used if the package uses a non-standard license.
[INFO] [stderr] See https://doc.rust-lang.org/cargo/reference/manifest.html#the-license-and-license-file-fields for more information.
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+62efba8a050c64249dab942951bb28f710208bc8" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 6f2517df4671ce2559afc7f63b1ffe9cb08df04bd65dcd6aa01bd43e1c304a51
[INFO] running `Command { std: "docker" "start" "-a" "6f2517df4671ce2559afc7f63b1ffe9cb08df04bd65dcd6aa01bd43e1c304a51", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "6f2517df4671ce2559afc7f63b1ffe9cb08df04bd65dcd6aa01bd43e1c304a51", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "6f2517df4671ce2559afc7f63b1ffe9cb08df04bd65dcd6aa01bd43e1c304a51", kill_on_drop: false }`
[INFO] [stdout] 6f2517df4671ce2559afc7f63b1ffe9cb08df04bd65dcd6aa01bd43e1c304a51
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+62efba8a050c64249dab942951bb28f710208bc8" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 1562793cd05d580637e31c0c196c416e80efa1f324a7ee22bb6956f5ce1c3d78
[INFO] running `Command { std: "docker" "start" "-a" "1562793cd05d580637e31c0c196c416e80efa1f324a7ee22bb6956f5ce1c3d78", kill_on_drop: false }`
[INFO] [stderr] warning: only one of `license` or `license-file` is necessary
[INFO] [stderr] `license` should be used if the package license can be expressed with a standard SPDX expression.
[INFO] [stderr] `license-file` should be used if the package uses a non-standard license.
[INFO] [stderr] See https://doc.rust-lang.org/cargo/reference/manifest.html#the-license-and-license-file-fields for more information.
[INFO] [stderr]    Compiling unicode-xid v0.2.2
[INFO] [stderr]    Compiling syn v1.0.82
[INFO] [stderr]    Compiling rustversion v1.0.5
[INFO] [stderr]    Compiling unicode-segmentation v1.8.0
[INFO] [stderr]    Compiling regex-syntax v0.6.25
[INFO] [stderr]    Compiling lazy_static v1.4.0
[INFO] [stderr]    Compiling proc-macro2 v1.0.32
[INFO] [stderr]    Compiling heck v0.3.3
[INFO] [stderr]    Compiling quote v1.0.10
[INFO] [stderr]    Compiling regex v1.5.4
[INFO] [stderr]    Compiling thiserror-impl v1.0.30
[INFO] [stderr]    Compiling strum_macros v0.23.1
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling thiserror v1.0.30
[INFO] [stderr]    Compiling bio-types v0.12.1 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 6.66s
[INFO] running `Command { std: "docker" "inspect" "1562793cd05d580637e31c0c196c416e80efa1f324a7ee22bb6956f5ce1c3d78", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "1562793cd05d580637e31c0c196c416e80efa1f324a7ee22bb6956f5ce1c3d78", kill_on_drop: false }`
[INFO] [stdout] 1562793cd05d580637e31c0c196c416e80efa1f324a7ee22bb6956f5ce1c3d78
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+62efba8a050c64249dab942951bb28f710208bc8" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 77fc3cbb35a17147df217f82e5ade42a2fce910b807276b9167cb962bf72654c
[INFO] running `Command { std: "docker" "start" "-a" "77fc3cbb35a17147df217f82e5ade42a2fce910b807276b9167cb962bf72654c", kill_on_drop: false }`
[INFO] [stderr] warning: only one of `license` or `license-file` is necessary
[INFO] [stderr] `license` should be used if the package license can be expressed with a standard SPDX expression.
[INFO] [stderr] `license-file` should be used if the package uses a non-standard license.
[INFO] [stderr] See https://doc.rust-lang.org/cargo/reference/manifest.html#the-license-and-license-file-fields for more information.
[INFO] [stderr]    Compiling bio-types v0.12.1 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 1.52s
[INFO] running `Command { std: "docker" "inspect" "77fc3cbb35a17147df217f82e5ade42a2fce910b807276b9167cb962bf72654c", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "77fc3cbb35a17147df217f82e5ade42a2fce910b807276b9167cb962bf72654c", kill_on_drop: false }`
[INFO] [stdout] 77fc3cbb35a17147df217f82e5ade42a2fce910b807276b9167cb962bf72654c
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+62efba8a050c64249dab942951bb28f710208bc8" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] c90961deff20acca1836bd3a6546147620b0c42e9a0eb1bb6adfa597f63051b2
[INFO] running `Command { std: "docker" "start" "-a" "c90961deff20acca1836bd3a6546147620b0c42e9a0eb1bb6adfa597f63051b2", kill_on_drop: false }`
[INFO] [stderr] warning: only one of `license` or `license-file` is necessary
[INFO] [stderr] `license` should be used if the package license can be expressed with a standard SPDX expression.
[INFO] [stderr] `license-file` should be used if the package uses a non-standard license.
[INFO] [stderr] See https://doc.rust-lang.org/cargo/reference/manifest.html#the-license-and-license-file-fields for more information.
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 1.80s
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/bio_types-834901a346af685c)
[INFO] [stdout] 
[INFO] [stdout] running 15 tests
[INFO] [stdout] test alignment::tests::test_cigar ... ok
[INFO] [stdout] test alignment::tests::test_pretty ... ok
[INFO] [stdout] test alignment::tests::test_path ... ok
[INFO] [stdout] test annot::pos::tests::loc_impl ... ok
[INFO] [stdout] test annot::pos::tests::pos_accessors ... ok
[INFO] [stdout] test annot::contig::tests::first_and_last ... ok
[INFO] [stdout] test strand::tests::test_strand ... ok
[INFO] [stdout] test strand::tests::test_req_strand ... ok
[INFO] [stdout] test annot::pos::tests::string_representation ... ok
[INFO] [stdout] test annot::pos::tests::strand_conversion ... ok
[INFO] [stdout] test annot::contig::tests::intersection ... ok
[INFO] [stdout] test annot::contig::tests::into_outof ... ok
[INFO] [stdout] test annot::spliced::tests::into_outof ... ok
[INFO] [stdout] test annot::spliced::tests::intersection ... ok
[INFO] [stdout] test annot::spliced::tests::length_start_to_contig ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 15 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.02s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests bio-types
[INFO] [stdout] 
[INFO] [stdout] running 17 tests
[INFO] [stdout] test src/annot/contig.rs - annot::contig::Contig<R,S>::new (line 57) ... ok
[INFO] [stdout] test src/annot/pos.rs - annot::pos::Pos<R,S>::new (line 55) ... ok
[INFO] [stdout] test src/annot/spliced.rs - annot::spliced::Spliced<R,S>::new (line 238) ... ok
[INFO] [stdout] test src/sequence.rs - sequence::SequenceReadPairOrientation (line 39) ... ok
[INFO] [stdout] test src/alignment.rs - alignment::Alignment::cigar (line 95) ... ok
[INFO] [stdout] test src/annot/contig.rs - annot::contig::Contig<R,ReqStrand>::extend_downstream (line 177) ... ok
[INFO] [stdout] test src/alignment.rs - alignment::Alignment::path (line 332) ... ok
[INFO] [stdout] test src/annot/contig.rs - annot::contig::Contig<R,S>::with_first_length (line 82) ... ok
[INFO] [stdout] test src/annot/pos.rs - annot::pos::Pos<R,ReqStrand>::sub_assign (line 127) ... ok
[INFO] [stdout] test src/annot/refids.rs - annot::refids::RefIDSet (line 14) ... ok
[INFO] [stdout] test src/strand.rs - strand::ReqStrand::on_strand (line 175) ... ok
[INFO] [stdout] test src/annot/contig.rs - annot::contig::Contig<R,ReqStrand>::extend_upstream (line 150) ... ok
[INFO] [stdout] test src/annot/pos.rs - annot::pos::Pos<R,ReqStrand>::add_assign (line 96) ... ok
[INFO] [stdout] test src/annot/spliced.rs - annot::spliced::Spliced (line 208) ... ok
[INFO] [stdout] test src/annot/contig.rs - annot::contig::Contig (line 32) ... ok
[INFO] [stdout] test src/annot/mod.rs - annot (line 30) ... ok
[INFO] [stdout] test src/annot/pos.rs - annot::pos::Pos (line 31) ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 17 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 1.46s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "c90961deff20acca1836bd3a6546147620b0c42e9a0eb1bb6adfa597f63051b2", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "c90961deff20acca1836bd3a6546147620b0c42e9a0eb1bb6adfa597f63051b2", kill_on_drop: false }`
[INFO] [stdout] c90961deff20acca1836bd3a6546147620b0c42e9a0eb1bb6adfa597f63051b2