[INFO] cloning repository https://github.com/zaeleus/noodles [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/zaeleus/noodles" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fzaeleus%2Fnoodles", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fzaeleus%2Fnoodles'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] e2acc7d6b39486399432dd99dcb31e3dc1a88aa0 [INFO] testing zaeleus/noodles against master#62efba8a050c64249dab942951bb28f710208bc8 for pr-90799 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fzaeleus%2Fnoodles" "/workspace/builds/worker-8/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-8/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/zaeleus/noodles on toolchain 62efba8a050c64249dab942951bb28f710208bc8 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+62efba8a050c64249dab942951bb28f710208bc8" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/zaeleus/noodles [INFO] finished tweaking git repo https://github.com/zaeleus/noodles [INFO] tweaked toml for git repo https://github.com/zaeleus/noodles written to /workspace/builds/worker-8/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+62efba8a050c64249dab942951bb28f710208bc8" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+62efba8a050c64249dab942951bb28f710208bc8" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+62efba8a050c64249dab942951bb28f710208bc8" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 6e494cc93f90b1195114243c949f042ba021850bf9e936c133b7e8dca4aaf6d5 [INFO] running `Command { std: "docker" "start" "-a" "6e494cc93f90b1195114243c949f042ba021850bf9e936c133b7e8dca4aaf6d5", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "6e494cc93f90b1195114243c949f042ba021850bf9e936c133b7e8dca4aaf6d5", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "6e494cc93f90b1195114243c949f042ba021850bf9e936c133b7e8dca4aaf6d5", kill_on_drop: false }` [INFO] [stdout] 6e494cc93f90b1195114243c949f042ba021850bf9e936c133b7e8dca4aaf6d5 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+62efba8a050c64249dab942951bb28f710208bc8" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 8035b88b96b1db1721b0f4497c1106fb9a1b73bb76090103680cb6c65df0d3ea [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "8035b88b96b1db1721b0f4497c1106fb9a1b73bb76090103680cb6c65df0d3ea", kill_on_drop: false }` [INFO] [stderr] Compiling adler v1.0.2 [INFO] [stderr] Compiling byteorder v1.4.3 [INFO] [stderr] Compiling pkg-config v0.3.22 [INFO] [stderr] Compiling memchr v2.4.1 [INFO] [stderr] Compiling typenum v1.14.0 [INFO] [stderr] Compiling rustc-hash v1.1.0 [INFO] [stderr] Compiling bit-vec v0.6.3 [INFO] [stderr] Compiling percent-encoding v2.1.0 [INFO] [stderr] Compiling minimal-lexical v0.2.1 [INFO] [stderr] Compiling opaque-debug v0.3.0 [INFO] [stderr] Compiling noodles-fastq v0.3.0 (/opt/rustwide/workdir/noodles-fastq) [INFO] [stderr] Compiling noodles-gtf v0.1.0 (/opt/rustwide/workdir/noodles-gtf) [INFO] [stderr] Compiling noodles v0.14.0 (/opt/rustwide/workdir/noodles) [INFO] [stderr] Compiling miniz_oxide v0.4.4 [INFO] [stderr] Compiling indexmap v1.7.0 [INFO] [stderr] Compiling generic-array v0.14.4 [INFO] [stderr] Compiling nom v7.1.0 [INFO] [stderr] Compiling crc32fast v1.3.0 [INFO] [stderr] Compiling noodles-gff v0.4.0 (/opt/rustwide/workdir/noodles-gff) [INFO] [stderr] Compiling lzma-sys v0.1.17 [INFO] [stderr] Compiling bzip2-sys v0.1.11+1.0.8 [INFO] [stderr] Compiling flate2 v1.0.22 [INFO] [stderr] Compiling xz2 v0.1.6 [INFO] [stderr] Compiling noodles-bgzf v0.7.0 (/opt/rustwide/workdir/noodles-bgzf) [INFO] [stderr] Compiling bzip2 v0.4.3 [INFO] [stderr] Compiling noodles-sam v0.8.1 (/opt/rustwide/workdir/noodles-sam) [INFO] [stderr] Compiling noodles-csi v0.4.2 (/opt/rustwide/workdir/noodles-csi) [INFO] [stderr] Compiling noodles-tabix v0.7.2 (/opt/rustwide/workdir/noodles-tabix) [INFO] [stderr] Compiling block-buffer v0.9.0 [INFO] [stderr] Compiling digest v0.9.0 [INFO] [stderr] Compiling md-5 v0.9.1 [INFO] [stderr] Compiling noodles-core v0.3.1 (/opt/rustwide/workdir/noodles-core) [INFO] [stderr] Compiling noodles-bam v0.10.0 (/opt/rustwide/workdir/noodles-bam) [INFO] [stderr] Compiling noodles-fasta v0.5.0 (/opt/rustwide/workdir/noodles-fasta) [INFO] [stderr] Compiling noodles-vcf v0.11.0 (/opt/rustwide/workdir/noodles-vcf) [INFO] [stderr] Compiling noodles-cram v0.8.2 (/opt/rustwide/workdir/noodles-cram) [INFO] [stderr] Compiling noodles-bcf v0.9.0 (/opt/rustwide/workdir/noodles-bcf) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 44.35s [INFO] running `Command { std: "docker" "inspect" "8035b88b96b1db1721b0f4497c1106fb9a1b73bb76090103680cb6c65df0d3ea", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "8035b88b96b1db1721b0f4497c1106fb9a1b73bb76090103680cb6c65df0d3ea", kill_on_drop: false }` [INFO] [stdout] 8035b88b96b1db1721b0f4497c1106fb9a1b73bb76090103680cb6c65df0d3ea [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+62efba8a050c64249dab942951bb28f710208bc8" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 7d4c2c2d4ee61fd81dd3d566fa2c89f00a4d9e49d27133e7e98170e3bb3222ce [INFO] running `Command { std: "docker" "start" "-a" "7d4c2c2d4ee61fd81dd3d566fa2c89f00a4d9e49d27133e7e98170e3bb3222ce", kill_on_drop: false }` [INFO] [stderr] Compiling syn v1.0.82 [INFO] [stderr] Compiling pin-project-lite v0.2.7 [INFO] [stderr] Compiling noodles-gtf v0.1.0 (/opt/rustwide/workdir/noodles-gtf) [INFO] [stderr] Compiling noodles v0.14.0 (/opt/rustwide/workdir/noodles) [INFO] [stderr] Compiling tokio v1.14.0 [INFO] [stderr] Compiling noodles-gff v0.4.0 (/opt/rustwide/workdir/noodles-gff) [INFO] [stderr] Compiling proc-macro2 v1.0.33 [INFO] [stderr] Compiling noodles-core v0.3.1 (/opt/rustwide/workdir/noodles-core) [INFO] [stderr] Compiling noodles-fasta v0.5.0 (/opt/rustwide/workdir/noodles-fasta) [INFO] [stderr] Compiling quote v1.0.10 [INFO] [stderr] Compiling tokio-macros v1.6.0 [INFO] [stderr] Compiling noodles-vcf v0.11.0 (/opt/rustwide/workdir/noodles-vcf) [INFO] [stderr] Compiling noodles-tabix v0.7.2 (/opt/rustwide/workdir/noodles-tabix) [INFO] [stderr] Compiling noodles-bgzf v0.7.0 (/opt/rustwide/workdir/noodles-bgzf) [INFO] [stderr] Compiling noodles-csi v0.4.2 (/opt/rustwide/workdir/noodles-csi) [INFO] [stderr] Compiling noodles-cram v0.8.2 (/opt/rustwide/workdir/noodles-cram) [INFO] [stderr] Compiling noodles-bam v0.10.0 (/opt/rustwide/workdir/noodles-bam) [INFO] [stderr] Compiling noodles-bcf v0.9.0 (/opt/rustwide/workdir/noodles-bcf) [INFO] [stderr] Compiling noodles-sam v0.8.1 (/opt/rustwide/workdir/noodles-sam) [INFO] [stderr] Compiling noodles-fastq v0.3.0 (/opt/rustwide/workdir/noodles-fastq) [INFO] [stdout] error[E0433]: failed to resolve: could not find `AsyncReader` in `bgzf` [INFO] [stdout] --> noodles-bgzf/examples/bgzf_read_async.rs:14:54 [INFO] [stdout] | [INFO] [stdout] 14 | let mut reader = File::open(src).await.map(bgzf::AsyncReader::new)?; [INFO] [stdout] | ^^^^^^^^^^^ could not find `AsyncReader` in `bgzf` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0432]: unresolved import `futures` [INFO] [stdout] --> noodles-bam/examples/bam_count_async.rs:7:5 [INFO] [stdout] | [INFO] [stdout] 7 | use futures::TryStreamExt; [INFO] [stdout] | ^^^^^^^ use of undeclared crate or module `futures` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0433]: failed to resolve: could not find `AsyncReader` in `bam` [INFO] [stdout] --> noodles-bam/examples/bam_count_async.rs:15:53 [INFO] [stdout] | [INFO] [stdout] 15 | let mut reader = File::open(src).await.map(bam::AsyncReader::new)?; [INFO] [stdout] | ^^^^^^^^^^^ could not find `AsyncReader` in `bam` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0433]: failed to resolve: could not find `AsyncReader` in `bam` [INFO] [stdout] --> noodles-bam/examples/bam_idxstats_async.rs:20:54 [INFO] [stdout] | [INFO] [stdout] 20 | let mut reader = File::open(&src).await.map(bam::AsyncReader::new)?; [INFO] [stdout] | ^^^^^^^^^^^ could not find `AsyncReader` in `bam` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0433]: failed to resolve: could not find `AsyncWriter` in `fastq` [INFO] [stdout] --> noodles-fastq/examples/fastq_write_async.rs:10:29 [INFO] [stdout] | [INFO] [stdout] 10 | let mut writer = fastq::AsyncWriter::new(io::stdout()); [INFO] [stdout] | ^^^^^^^^^^^ could not find `AsyncWriter` in `fastq` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0433]: failed to resolve: could not find `BufWriter` in `io` [INFO] [stdout] --> noodles-bgzf/examples/bgzf_read_async.rs:15:26 [INFO] [stdout] | [INFO] [stdout] 15 | let mut writer = io::BufWriter::new(io::stdout()); [INFO] [stdout] | ^^^^^^^^^ not found in `io` [INFO] [stdout] | [INFO] [stdout] help: consider importing this struct [INFO] [stdout] | [INFO] [stdout] 5 | use std::io::BufWriter; [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0425]: cannot find function `copy_buf` in module `io` [INFO] [stdout] --> noodles-bgzf/examples/bgzf_read_async.rs:16:9 [INFO] [stdout] | [INFO] [stdout] 16 | io::copy_buf(&mut reader, &mut writer).await?; [INFO] [stdout] | ^^^^^^^^ not found in `io` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to previous error [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] For more information about this error, try `rustc --explain E0433`. [INFO] [stdout] [INFO] [stdout] error[E0433]: failed to resolve: could not find `r#async` in `bai` [INFO] [stdout] --> noodles-bam/examples/bam_idxstats_async.rs:23:22 [INFO] [stdout] | [INFO] [stdout] 23 | let index = bai::r#async::read(src.with_extension("bam.bai")).await?; [INFO] [stdout] | ^^^^^^^ could not find `r#async` in `bai` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to 3 previous errors [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] Some errors have detailed explanations: E0425, E0433. [INFO] [stdout] [INFO] [stdout] For more information about an error, try `rustc --explain E0425`. [INFO] [stdout] [INFO] [stderr] error: could not compile `noodles-fastq` due to 2 previous errors [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stdout] warning: unused import: `binning_index::ReferenceSequenceExt` [INFO] [stdout] --> noodles-bam/examples/bam_idxstats_async.rs:12:19 [INFO] [stdout] | [INFO] [stdout] 12 | use noodles_csi::{binning_index::ReferenceSequenceExt, BinningIndex}; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `BinningIndex` [INFO] [stdout] --> noodles-bam/examples/bam_idxstats_async.rs:12:56 [INFO] [stdout] | [INFO] [stdout] 12 | use noodles_csi::{binning_index::ReferenceSequenceExt, BinningIndex}; [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to 2 previous errors; 2 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to 2 previous errors [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] Some errors have detailed explanations: E0432, E0433. [INFO] [stdout] [INFO] [stdout] For more information about an error, try `rustc --explain E0432`. [INFO] [stdout] [INFO] [stdout] For more information about this error, try `rustc --explain E0433`. [INFO] [stdout] [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "7d4c2c2d4ee61fd81dd3d566fa2c89f00a4d9e49d27133e7e98170e3bb3222ce", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "7d4c2c2d4ee61fd81dd3d566fa2c89f00a4d9e49d27133e7e98170e3bb3222ce", kill_on_drop: false }` [INFO] [stdout] 7d4c2c2d4ee61fd81dd3d566fa2c89f00a4d9e49d27133e7e98170e3bb3222ce