[INFO] cloning repository https://github.com/zaeleus/noodles-count-features
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/zaeleus/noodles-count-features" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fzaeleus%2Fnoodles-count-features", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fzaeleus%2Fnoodles-count-features'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 0243119c2c965adbd0f28afa8447f8db61b7ffa1
[INFO] testing zaeleus/noodles-count-features against master#62efba8a050c64249dab942951bb28f710208bc8 for pr-90799
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fzaeleus%2Fnoodles-count-features" "/workspace/builds/worker-7/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-7/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/zaeleus/noodles-count-features on toolchain 62efba8a050c64249dab942951bb28f710208bc8
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+62efba8a050c64249dab942951bb28f710208bc8" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/zaeleus/noodles-count-features
[INFO] finished tweaking git repo https://github.com/zaeleus/noodles-count-features
[INFO] tweaked toml for git repo https://github.com/zaeleus/noodles-count-features written to /workspace/builds/worker-7/source/Cargo.toml
[INFO] crate git repo https://github.com/zaeleus/noodles-count-features already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+62efba8a050c64249dab942951bb28f710208bc8" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+62efba8a050c64249dab942951bb28f710208bc8" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] c842bf6147f78e930b1b6ad3077ffca125cb27422842d82ff4dc5c7259a2b3ea
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "c842bf6147f78e930b1b6ad3077ffca125cb27422842d82ff4dc5c7259a2b3ea", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "c842bf6147f78e930b1b6ad3077ffca125cb27422842d82ff4dc5c7259a2b3ea", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "c842bf6147f78e930b1b6ad3077ffca125cb27422842d82ff4dc5c7259a2b3ea", kill_on_drop: false }`
[INFO] [stdout] c842bf6147f78e930b1b6ad3077ffca125cb27422842d82ff4dc5c7259a2b3ea
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+62efba8a050c64249dab942951bb28f710208bc8" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 30baae880444dec440c16a091bc49d2911a8786a819cfffb91ccbbc51f5881a6
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "30baae880444dec440c16a091bc49d2911a8786a819cfffb91ccbbc51f5881a6", kill_on_drop: false }`
[INFO] [stderr]    Compiling pin-project-lite v0.2.7
[INFO] [stderr]    Compiling memchr v2.4.1
[INFO] [stderr]    Compiling futures-core v0.3.17
[INFO] [stderr]    Compiling log v0.4.14
[INFO] [stderr]    Compiling futures-sink v0.3.17
[INFO] [stderr]    Compiling futures-task v0.3.17
[INFO] [stderr]    Compiling bytes v1.1.0
[INFO] [stderr]    Compiling unicode-xid v0.2.2
[INFO] [stderr]    Compiling adler v1.0.2
[INFO] [stderr]    Compiling futures-io v0.3.17
[INFO] [stderr]    Compiling lazy_static v1.4.0
[INFO] [stderr]    Compiling hashbrown v0.11.2
[INFO] [stderr]    Compiling serde v1.0.130
[INFO] [stderr]    Compiling regex-syntax v0.6.25
[INFO] [stderr]    Compiling serde_json v1.0.68
[INFO] [stderr]    Compiling bit-vec v0.6.3
[INFO] [stderr]    Compiling percent-encoding v2.1.0
[INFO] [stderr]    Compiling anyhow v1.0.44
[INFO] [stderr]    Compiling smallvec v1.7.0
[INFO] [stderr]    Compiling no-std-compat v0.4.1
[INFO] [stderr]    Compiling ansi_term v0.12.1
[INFO] [stderr]    Compiling interval-tree v0.2.0 (https://github.com/zaeleus/interval-tree.git?rev=e303d7254d53de5c418d6079d4b66c30c10958d4#e303d725)
[INFO] [stderr]    Compiling miniz_oxide v0.4.4
[INFO] [stderr]    Compiling futures-util v0.3.17
[INFO] [stderr]    Compiling tokio v1.12.0
[INFO] [stderr]    Compiling num-traits v0.2.14
[INFO] [stderr]    Compiling num-integer v0.1.44
[INFO] [stderr]    Compiling indexmap v1.7.0
[INFO] [stderr]    Compiling tracing-core v0.1.21
[INFO] [stderr]    Compiling sharded-slab v0.1.4
[INFO] [stderr]    Compiling thread_local v1.1.3
[INFO] [stderr]    Compiling noodles-gff v0.3.0
[INFO] [stderr]    Compiling proc-macro2 v1.0.32
[INFO] [stderr]    Compiling num_cpus v1.13.0
[INFO] [stderr]    Compiling clap v2.33.3
[INFO] [stderr]    Compiling futures-channel v0.3.17
[INFO] [stderr]    Compiling tracing-log v0.1.2
[INFO] [stderr]    Compiling quote v1.0.10
[INFO] [stderr]    Compiling syn v1.0.81
[INFO] [stderr]    Compiling flate2 v1.0.22
[INFO] [stderr]    Compiling chrono v0.4.19
[INFO] [stderr]    Compiling regex-automata v0.1.10
[INFO] [stderr]    Compiling regex v1.5.4
[INFO] [stderr]    Compiling matchers v0.0.1
[INFO] [stderr]    Compiling tokio-util v0.6.8
[INFO] [stderr]    Compiling futures v0.3.17
[INFO] [stderr]    Compiling tracing-serde v0.1.2
[INFO] [stderr]    Compiling noodles-bgzf v0.4.0
[INFO] [stderr]    Compiling noodles-sam v0.6.0
[INFO] [stderr]    Compiling noodles-csi v0.3.0
[INFO] [stderr]    Compiling noodles-core v0.2.3
[INFO] [stderr]    Compiling noodles-bam v0.7.0
[INFO] [stderr]    Compiling tracing-attributes v0.1.18
[INFO] [stderr]    Compiling git-testament-derive v0.1.12
[INFO] [stderr]    Compiling noodles v0.11.0
[INFO] [stderr]    Compiling git-testament v0.2.0
[INFO] [stderr]    Compiling tracing v0.1.29
[INFO] [stderr]    Compiling tracing-subscriber v0.2.25
[INFO] [stderr]    Compiling noodles-squab v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 1m 54s
[INFO] running `Command { std: "docker" "inspect" "30baae880444dec440c16a091bc49d2911a8786a819cfffb91ccbbc51f5881a6", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "30baae880444dec440c16a091bc49d2911a8786a819cfffb91ccbbc51f5881a6", kill_on_drop: false }`
[INFO] [stdout] 30baae880444dec440c16a091bc49d2911a8786a819cfffb91ccbbc51f5881a6
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+62efba8a050c64249dab942951bb28f710208bc8" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 6eedbc1e339740d04465d5867175153b15dad76eca12af047d7b28d9eea139bb
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "6eedbc1e339740d04465d5867175153b15dad76eca12af047d7b28d9eea139bb", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]    Compiling tokio v1.12.0
[INFO] [stderr]    Compiling tokio-macros v1.5.0
[INFO] [stderr]    Compiling tokio-util v0.6.8
[INFO] [stderr]    Compiling noodles-bgzf v0.4.0
[INFO] [stderr]    Compiling noodles-sam v0.6.0
[INFO] [stderr]    Compiling noodles-csi v0.3.0
[INFO] [stderr]    Compiling noodles-core v0.2.3
[INFO] [stderr]    Compiling noodles-bam v0.7.0
[INFO] [stderr]    Compiling noodles v0.11.0
[INFO] [stderr]    Compiling noodles-squab v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 38.68s
[INFO] running `Command { std: "docker" "inspect" "6eedbc1e339740d04465d5867175153b15dad76eca12af047d7b28d9eea139bb", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "6eedbc1e339740d04465d5867175153b15dad76eca12af047d7b28d9eea139bb", kill_on_drop: false }`
[INFO] [stdout] 6eedbc1e339740d04465d5867175153b15dad76eca12af047d7b28d9eea139bb
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+62efba8a050c64249dab942951bb28f710208bc8" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] f05ff1c64ea8f2973eaa4e0136efd17fff12476cf5a76c4f1b097e091df50c58
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "f05ff1c64ea8f2973eaa4e0136efd17fff12476cf5a76c4f1b097e091df50c58", kill_on_drop: false }`
[INFO] [stdout] 
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 0.10s
[INFO] [stdout] running 27 tests
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/noodles_squab-7bdef7eb05a43f39)
[INFO] [stdout] test commands::tests::test_from_str ... ok
[INFO] [stdout] test count::context::tests::test_add ... ok
[INFO] [stdout] test count::writer::tests::test_write_counts ... ok
[INFO] [stdout] test feature::tests::test_is_empty ... ok
[INFO] [stdout] test normalization::method::tests::test_from_str ... ok
[INFO] [stdout] test normalization::tpm::tests::test_calculate_tpms ... ok
[INFO] [stdout] test normalization::tpm::tests::test_calculate_tpms_with_missing_feature ... ok
[INFO] [stdout] test feature::tests::test_reference_sequence_name ... ok
[INFO] [stdout] test feature::tests::test_start ... ok
[INFO] [stdout] test normalization::fpkm::tests::test_calculate_fpkms_with_missing_feature ... ok
[INFO] [stdout] test count::reader::tests::test_read_counts ... ok
[INFO] [stdout] test feature::tests::test_end ... ok
[INFO] [stdout] test normalization::tests::test_sum_nonoverlapping_feature_lengths ... ok
[INFO] [stdout] test match_intervals::tests::test_next ... ok
[INFO] [stdout] test count::tests::test_get_reference ... ok
[INFO] [stdout] test count::context::tests::test_add_event ... ok
[INFO] [stdout] test record_pairs::pair_position::tests::test_mate ... ok
[INFO] [stdout] test count::writer::tests::test_write_stats ... ok
[INFO] [stdout] test normalization::fpkm::tests::test_calculate_fpkms ... ok
[INFO] [stdout] test feature::tests::test_len ... ok
[INFO] [stdout] test feature::tests::test_strand ... ok
[INFO] [stdout] test normalization::tests::test_merge_features ... ok
[INFO] [stdout] test tests::test_read_features ... ok
[INFO] [stdout] test record_pairs::tests::test_mate_key ... ok
[INFO] [stdout] test record_pairs::tests::test_key ... ok
[INFO] [stdout] test record_pairs::pair_position::tests::test_try_from_flag ... ok
[INFO] [stdout] test normalization::writer::tests::test_write_values ... ok
[INFO] [stdout] 
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/noodles_squab-85137432c29f8cf0)
[INFO] [stdout] test result: ok. 27 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s
[INFO] [stderr]      Running tests/quantify_single_end_forward_test.rs (/opt/rustwide/target/debug/deps/quantify_single_end_forward_test-b5415d33fedb02d7)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 1 test
[INFO] [stderr]    Doc-tests noodles-squab
[INFO] [stdout] test test_quantify_with_single_end_forward_sample ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.04s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "f05ff1c64ea8f2973eaa4e0136efd17fff12476cf5a76c4f1b097e091df50c58", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "f05ff1c64ea8f2973eaa4e0136efd17fff12476cf5a76c4f1b097e091df50c58", kill_on_drop: false }`
[INFO] [stdout] f05ff1c64ea8f2973eaa4e0136efd17fff12476cf5a76c4f1b097e091df50c58