[INFO] cloning repository https://github.com/stjude/fqlib [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/stjude/fqlib" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fstjude%2Ffqlib", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fstjude%2Ffqlib'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] e9f8d091690d7f6fcc9821cef8ae3ba4ea586485 [INFO] testing stjude/fqlib against master#62efba8a050c64249dab942951bb28f710208bc8 for pr-90799 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fstjude%2Ffqlib" "/workspace/builds/worker-3/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-3/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/stjude/fqlib on toolchain 62efba8a050c64249dab942951bb28f710208bc8 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+62efba8a050c64249dab942951bb28f710208bc8" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/stjude/fqlib [INFO] finished tweaking git repo https://github.com/stjude/fqlib [INFO] tweaked toml for git repo https://github.com/stjude/fqlib written to /workspace/builds/worker-3/source/Cargo.toml [INFO] crate git repo https://github.com/stjude/fqlib already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+62efba8a050c64249dab942951bb28f710208bc8" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+62efba8a050c64249dab942951bb28f710208bc8" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 9f07ad631ec0930279e12bcbfbd9cb9a83f8c66b720853835c8f97cceb427f31 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "9f07ad631ec0930279e12bcbfbd9cb9a83f8c66b720853835c8f97cceb427f31", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "9f07ad631ec0930279e12bcbfbd9cb9a83f8c66b720853835c8f97cceb427f31", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "9f07ad631ec0930279e12bcbfbd9cb9a83f8c66b720853835c8f97cceb427f31", kill_on_drop: false }` [INFO] [stdout] 9f07ad631ec0930279e12bcbfbd9cb9a83f8c66b720853835c8f97cceb427f31 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+62efba8a050c64249dab942951bb28f710208bc8" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 3da1ee83ec5ae1b422b1ea4a862b89378d5bcc20fd78d3d69d1a9ca6c81dfcd7 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "3da1ee83ec5ae1b422b1ea4a862b89378d5bcc20fd78d3d69d1a9ca6c81dfcd7", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.107 [INFO] [stderr] Compiling proc-macro2 v1.0.32 [INFO] [stderr] Compiling syn v1.0.81 [INFO] [stderr] Compiling libm v0.2.1 [INFO] [stderr] Compiling ppv-lite86 v0.2.15 [INFO] [stderr] Compiling time-macros v0.2.3 [INFO] [stderr] Compiling itoa v0.4.8 [INFO] [stderr] Compiling unicode-width v0.1.9 [INFO] [stderr] Compiling anyhow v1.0.45 [INFO] [stderr] Compiling strsim v0.8.0 [INFO] [stderr] Compiling ansi_term v0.11.0 [INFO] [stderr] Compiling no-std-compat v0.4.1 [INFO] [stderr] Compiling smallvec v1.7.0 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling num-traits v0.2.14 [INFO] [stderr] Compiling tracing-core v0.1.21 [INFO] [stderr] Compiling thread_local v1.1.3 [INFO] [stderr] Compiling sharded-slab v0.1.4 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling tracing-log v0.1.2 [INFO] [stderr] Compiling quote v1.0.10 [INFO] [stderr] Compiling getrandom v0.2.3 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling flate2 v1.0.22 [INFO] [stderr] Compiling bbloom v0.1.0 (https://github.com/zaeleus/bbloom.git?tag=v0.1.0#2c9f6163) [INFO] [stderr] Compiling clap v2.33.3 [INFO] [stderr] Compiling rand_core v0.6.3 [INFO] [stderr] Compiling tracing-subscriber v0.3.1 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling time v0.3.5 [INFO] [stderr] Compiling rand v0.8.4 [INFO] [stderr] Compiling rand_distr v0.4.2 [INFO] [stderr] Compiling git-testament-derive v0.1.13 [INFO] [stderr] Compiling tracing-attributes v0.1.18 [INFO] [stderr] Compiling git-testament v0.2.1 [INFO] [stderr] Compiling tracing v0.1.29 [INFO] [stderr] Compiling fq v0.8.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 56.09s [INFO] running `Command { std: "docker" "inspect" "3da1ee83ec5ae1b422b1ea4a862b89378d5bcc20fd78d3d69d1a9ca6c81dfcd7", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "3da1ee83ec5ae1b422b1ea4a862b89378d5bcc20fd78d3d69d1a9ca6c81dfcd7", kill_on_drop: false }` [INFO] [stdout] 3da1ee83ec5ae1b422b1ea4a862b89378d5bcc20fd78d3d69d1a9ca6c81dfcd7 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+62efba8a050c64249dab942951bb28f710208bc8" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 97fb472ec263a012aeb4f4b01bdee2be56dfc2aed7c30081f29ce3d7074c69e9 [INFO] running `Command { std: "docker" "start" "-a" "97fb472ec263a012aeb4f4b01bdee2be56dfc2aed7c30081f29ce3d7074c69e9", kill_on_drop: false }` [INFO] [stderr] Compiling fq v0.8.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 4.62s [INFO] running `Command { std: "docker" "inspect" "97fb472ec263a012aeb4f4b01bdee2be56dfc2aed7c30081f29ce3d7074c69e9", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "97fb472ec263a012aeb4f4b01bdee2be56dfc2aed7c30081f29ce3d7074c69e9", kill_on_drop: false }` [INFO] [stdout] 97fb472ec263a012aeb4f4b01bdee2be56dfc2aed7c30081f29ce3d7074c69e9 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+62efba8a050c64249dab942951bb28f710208bc8" "test" "--frozen", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 2a2a7a2246794d7cd71ec49df9ba528da00ed7923af3745ab265a16064b8a2f2 [INFO] running `Command { std: "docker" "start" "-a" "2a2a7a2246794d7cd71ec49df9ba528da00ed7923af3745ab265a16064b8a2f2", kill_on_drop: false }` [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.10s [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/fq-bf9371205ee4534a) [INFO] [stdout] [INFO] [stdout] running 54 tests [INFO] [stdout] test commands::filter::tests::test_read_names ... ok [INFO] [stdout] test generator::tests::test_next_record ... ok [INFO] [stdout] test fastq::writer::tests::test_write_record ... ok [INFO] [stdout] test validators::paired::names::tests::test_name ... ok [INFO] [stdout] test fastq::reader::tests::test_read_record ... ok [INFO] [stdout] test validators::paired::names::tests::test_validate ... ok [INFO] [stdout] test generator::builder::tests::test_build ... ok [INFO] [stdout] test validators::single::alphabet::tests::test_level ... ok [INFO] [stdout] test generator::tests::test_next_record_with_read_length ... ok [INFO] [stdout] test validators::single::alphabet::tests::test_validate ... ok [INFO] [stdout] test validators::single::alphabet::tests::test_code ... ok [INFO] [stdout] test fastq::record::tests::test_clear ... ok [INFO] [stdout] test commands::lint::tests::test_build_error_message ... ok [INFO] [stdout] test validators::single::complete::tests::test_name ... ok [INFO] [stdout] test validators::single::complete::tests::test_validate ... ok [INFO] [stdout] test commands::filter::tests::test_name_id ... ok [INFO] [stdout] test fastq::reader::tests::test_read_line ... ok [INFO] [stdout] test commands::lint::tests::test_build_error_message_with_no_col_no ... ok [INFO] [stdout] test validators::single::consistent_seq_qual::tests::test_code ... ok [INFO] [stdout] test validators::single::consistent_seq_qual::tests::test_level ... ok [INFO] [stdout] test commands::filter::tests::test_copy_filtered ... ok [INFO] [stdout] test validators::paired::names::tests::test_code ... ok [INFO] [stdout] test distributions::character::tests::test_sample ... ok [INFO] [stdout] test validators::paired::names::tests::test_level ... ok [INFO] [stdout] test validators::single::complete::tests::test_level ... ok [INFO] [stdout] test validators::single::alphabet::tests::test_name ... ok [INFO] [stdout] test validators::single::complete::tests::test_code ... ok [INFO] [stdout] test commands::subsample::tests::test_subsample_paired ... ok [INFO] [stdout] test commands::subsample::tests::test_subsample_single ... ok [INFO] [stdout] test validators::single::alphabet::tests::test_new ... ok [INFO] [stdout] test validators::single::name::tests::test_validate ... ok [INFO] [stdout] test validators::single::name::tests::test_name ... ok [INFO] [stdout] test validators::single::duplicate_name::tests::test_is_empty ... ok [INFO] [stdout] test validators::single::name::tests::test_level ... ok [INFO] [stdout] test validators::single::name::tests::test_code ... ok [INFO] [stdout] test validators::single::duplicate_name::tests::test_name ... ok [INFO] [stdout] test validators::single::consistent_seq_qual::tests::test_validate ... ok [INFO] [stdout] test validators::single::duplicate_name::tests::test_code ... ok [INFO] [stdout] test validators::single::consistent_seq_qual::tests::test_name ... ok [INFO] [stdout] test validators::single::plus_line::tests::test_code ... ok [INFO] [stdout] test validators::single::plus_line::tests::test_level ... ok [INFO] [stdout] test validators::single::quality_string::tests::test_code ... ok [INFO] [stdout] test validators::single::quality_string::tests::test_name ... ok [INFO] [stdout] test validators::single::quality_string::tests::test_validate ... ok [INFO] [stdout] test validators::single::plus_line::tests::test_name ... ok [INFO] [stdout] test validators::single::quality_string::tests::test_level ... ok [INFO] [stdout] test validators::single::plus_line::tests::test_validate ... ok [INFO] [stdout] test validators::tests::test_filter_paired_read_validators ... ok [INFO] [stdout] test validators::tests::test_filter_single_read_validators ... ok [INFO] [stdout] test validators::tests::test_filter_validators ... ok [INFO] [stdout] test validators::tests::test_filter_paired_read_validators_with_disabled_validators ... ok [INFO] [stdout] test validators::tests::test_filter_single_read_validators_with_disabled_validators ... ok [INFO] [stdout] test validators::validation_level::tests::test_from_str ... ok [INFO] [stdout] test validators::single::duplicate_name::tests::test_level ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 54 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.16s [INFO] [stdout] [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/fq-921f92a0b1dd6258) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Doc-tests fq [INFO] [stdout] [INFO] [stdout] running 9 tests [INFO] [stdout] test src/generator.rs - generator::Generator::next_record (line 123) ... ok [INFO] [stdout] test src/generator.rs - generator::Generator::next_record_with_name (line 142) ... ok [INFO] [stdout] test src/validators/single/duplicate_name.rs - validators::single::duplicate_name::DuplicateNameValidator (line 22) ... ok [INFO] [stdout] test src/generator.rs - generator::Generator::new (line 55) ... ok [INFO] [stdout] test src/validators/single/duplicate_name.rs - validators::single::duplicate_name::DuplicateNameValidator::insert (line 63) ... ok [INFO] [stdout] test src/fastq/record.rs - fastq::record::Record::reset (line 74) ... ok [INFO] [stdout] test src/validators/single/duplicate_name.rs - validators::single::duplicate_name::DuplicateNameValidator::is_empty (line 86) ... ok [INFO] [stdout] test src/generator.rs - generator::Generator::from_rng (line 83) ... ok [INFO] [stdout] test src/distributions/character.rs - distributions::character::Character (line 10) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 9 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 10.36s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "2a2a7a2246794d7cd71ec49df9ba528da00ed7923af3745ab265a16064b8a2f2", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "2a2a7a2246794d7cd71ec49df9ba528da00ed7923af3745ab265a16064b8a2f2", kill_on_drop: false }` [INFO] [stdout] 2a2a7a2246794d7cd71ec49df9ba528da00ed7923af3745ab265a16064b8a2f2