[INFO] cloning repository https://github.com/preiter93/rustpde [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/preiter93/rustpde" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fpreiter93%2Frustpde", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fpreiter93%2Frustpde'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] a312466d9dce3b4ecfcd1811e5fc5866b42ea2b0 [INFO] testing preiter93/rustpde against master#62efba8a050c64249dab942951bb28f710208bc8 for pr-90799 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fpreiter93%2Frustpde" "/workspace/builds/worker-0/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-0/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/preiter93/rustpde on toolchain 62efba8a050c64249dab942951bb28f710208bc8 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+62efba8a050c64249dab942951bb28f710208bc8" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/preiter93/rustpde [INFO] finished tweaking git repo https://github.com/preiter93/rustpde [INFO] tweaked toml for git repo https://github.com/preiter93/rustpde written to /workspace/builds/worker-0/source/Cargo.toml [INFO] crate git repo https://github.com/preiter93/rustpde already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+62efba8a050c64249dab942951bb28f710208bc8" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+62efba8a050c64249dab942951bb28f710208bc8" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 2861da3eb61fc5863f5ee20f4847be99caf04524d16663deb1373cd8378753fe [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "2861da3eb61fc5863f5ee20f4847be99caf04524d16663deb1373cd8378753fe", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "2861da3eb61fc5863f5ee20f4847be99caf04524d16663deb1373cd8378753fe", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "2861da3eb61fc5863f5ee20f4847be99caf04524d16663deb1373cd8378753fe", kill_on_drop: false }` [INFO] [stdout] 2861da3eb61fc5863f5ee20f4847be99caf04524d16663deb1373cd8378753fe [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+62efba8a050c64249dab942951bb28f710208bc8" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 5d5544552cdb1d41c2ab24bbd10c0f9acb5733155b5d6e1f125e0e2c86916550 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "5d5544552cdb1d41c2ab24bbd10c0f9acb5733155b5d6e1f125e0e2c86916550", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling proc-macro2 v1.0.29 [INFO] [stderr] Compiling unicode-xid v0.2.2 [INFO] [stderr] Compiling serde v1.0.130 [INFO] [stderr] Compiling syn v1.0.77 [INFO] [stderr] Compiling crossbeam-epoch v0.9.5 [INFO] [stderr] Compiling memchr v2.4.1 [INFO] [stderr] Compiling regex-syntax v0.6.25 [INFO] [stderr] Compiling pkg-config v0.3.20 [INFO] [stderr] Compiling strength_reduce v0.2.3 [INFO] [stderr] Compiling hdf5-types v0.7.1 (/opt/rustwide/workdir/hdf5-interface/hdf5-rust/hdf5-types) [INFO] [stderr] Compiling hdf5 v0.7.1 (/opt/rustwide/workdir/hdf5-interface/hdf5-rust) [INFO] [stderr] Compiling ascii v1.0.0 [INFO] [stderr] Compiling once_cell v1.8.0 [INFO] [stderr] Compiling num-traits v0.2.14 [INFO] [stderr] Compiling num-integer v0.1.44 [INFO] [stderr] Compiling memoffset v0.6.4 [INFO] [stderr] Compiling rayon v1.5.1 [INFO] [stderr] Compiling libloading v0.7.0 [INFO] [stderr] Compiling instant v0.1.11 [INFO] [stderr] Compiling lock_api v0.4.5 [INFO] [stderr] Compiling matrixmultiply v0.3.1 [INFO] [stderr] Compiling crossbeam-utils v0.8.5 [INFO] [stderr] Compiling getrandom v0.2.3 [INFO] [stderr] Compiling num_cpus v1.13.0 [INFO] [stderr] Compiling cblas-sys v0.1.4 [INFO] [stderr] Compiling dirs-sys v0.3.6 [INFO] [stderr] Compiling lapack-sys v0.12.1 [INFO] [stderr] Compiling parking_lot_core v0.8.5 [INFO] [stderr] Compiling rand_core v0.6.3 [INFO] [stderr] Compiling dirs v3.0.2 [INFO] [stderr] Compiling crossbeam-channel v0.5.1 [INFO] [stderr] Compiling parking_lot v0.11.2 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling crossbeam-deque v0.8.1 [INFO] [stderr] Compiling aho-corasick v0.7.18 [INFO] [stderr] Compiling quote v1.0.9 [INFO] [stderr] Compiling rand v0.8.4 [INFO] [stderr] Compiling approx v0.4.0 [INFO] [stderr] Compiling num-complex v0.3.1 [INFO] [stderr] Compiling rayon-core v1.9.1 [INFO] [stderr] Compiling transpose v0.2.1 [INFO] [stderr] Compiling primal-check v0.3.1 [INFO] [stderr] Compiling rand_distr v0.4.2 [INFO] [stderr] Compiling rustfft v5.1.1 [INFO] [stderr] Compiling regex v1.5.4 [INFO] [stderr] Compiling num-complex v0.4.0 [INFO] [stderr] Compiling hdf5-sys v0.7.1 (/opt/rustwide/workdir/hdf5-interface/hdf5-rust/hdf5-sys) [INFO] [stderr] Compiling ndarray v0.15.3 [INFO] [stderr] Compiling rustfft v6.0.1 [INFO] [stderr] Compiling lapack v0.18.0 [INFO] [stderr] Compiling cauchy v0.4.0 [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.7.1 (/opt/rustwide/workdir/hdf5-interface/hdf5-rust/hdf5-sys)` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-12191ab9c2a60494/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_NO_PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', hdf5-interface/hdf5-rust/hdf5-sys/build.rs:548:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55fe40fa9d1c - std::backtrace_rs::backtrace::libunwind::trace::h793e05efd273d0f4 [INFO] [stderr] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/../../backtrace/src/backtrace/libunwind.rs:93:5 [INFO] [stderr] 1: 0x55fe40fa9d1c - std::backtrace_rs::backtrace::trace_unsynchronized::h640b7b86ff610c77 [INFO] [stderr] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x55fe40fa9d1c - std::sys_common::backtrace::_print_fmt::h362fa2a4f354f877 [INFO] [stderr] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x55fe40fa9d1c - ::fmt::hf439e5ed84c74abd [INFO] [stderr] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x55fe40fc898c - core::fmt::write::h72801a82c94e6ff1 [INFO] [stderr] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/core/src/fmt/mod.rs:1149:17 [INFO] [stderr] 5: 0x55fe40fa6555 - std::io::Write::write_fmt::h5562a8b6da0f0339 [INFO] [stderr] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/io/mod.rs:1697:15 [INFO] [stderr] 6: 0x55fe40fab690 - std::sys_common::backtrace::_print::hb29ddd998d02631c [INFO] [stderr] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x55fe40fab690 - std::sys_common::backtrace::print::h81965e3d7c90fbb6 [INFO] [stderr] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x55fe40fab690 - std::panicking::default_hook::{{closure}}::h84db205ab6674b38 [INFO] [stderr] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/panicking.rs:211:50 [INFO] [stderr] 9: 0x55fe40fab23b - std::panicking::default_hook::h1bf8bb4159936bca [INFO] [stderr] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/panicking.rs:228:9 [INFO] [stderr] 10: 0x55fe40fabd44 - std::panicking::rust_panic_with_hook::hf8e86850fbbd03b1 [INFO] [stderr] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/panicking.rs:606:17 [INFO] [stderr] 11: 0x55fe40ee6502 - std::panicking::begin_panic::{{closure}}::he974e9b1310ac583 [INFO] [stderr] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/panicking.rs:526:9 [INFO] [stderr] 12: 0x55fe40ee2e89 - std::sys_common::backtrace::__rust_end_short_backtrace::h62b115649d642f8d [INFO] [stderr] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/sys_common/backtrace.rs:139:18 [INFO] [stderr] 13: 0x55fe40ee6443 - std::panicking::begin_panic::hf4f81b7abddfa2a5 [INFO] [stderr] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/panicking.rs:525:12 [INFO] [stderr] 14: 0x55fe40d9fa97 - build_script_build::LibrarySearcher::try_locate_hdf5_library::hd52a31e69750f366 [INFO] [stderr] at /opt/rustwide/workdir/hdf5-interface/hdf5-rust/hdf5-sys/build.rs:548:13 [INFO] [stderr] 15: 0x55fe40da1237 - build_script_build::main::h8b13262ca58ad610 [INFO] [stderr] at /opt/rustwide/workdir/hdf5-interface/hdf5-rust/hdf5-sys/build.rs:646:9 [INFO] [stderr] 16: 0x55fe40da4a6b - core::ops::function::FnOnce::call_once::h01b53da73b7de134 [INFO] [stderr] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 17: 0x55fe40dad81e - std::sys_common::backtrace::__rust_begin_short_backtrace::h61071682941413d9 [INFO] [stderr] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/sys_common/backtrace.rs:123:18 [INFO] [stderr] 18: 0x55fe40dad8b1 - std::rt::lang_start::{{closure}}::h1c972d9f701d3986 [INFO] [stderr] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/rt.rs:145:18 [INFO] [stderr] 19: 0x55fe40fa9561 - core::ops::function::impls:: for &F>::call_once::h42d3791e66d196c0 [INFO] [stderr] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 20: 0x55fe40fa9561 - std::panicking::try::do_call::hc3bcb188e535517f [INFO] [stderr] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/panicking.rs:406:40 [INFO] [stderr] 21: 0x55fe40fa9561 - std::panicking::try::hb1edf04d4a7097ab [INFO] [stderr] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/panicking.rs:370:19 [INFO] [stderr] 22: 0x55fe40fa9561 - std::panic::catch_unwind::h75ed941ac0d36d57 [INFO] [stderr] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/panic.rs:133:14 [INFO] [stderr] 23: 0x55fe40fa9561 - std::rt::lang_start_internal::{{closure}}::hc702b3389af4cbea [INFO] [stderr] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/rt.rs:128:48 [INFO] [stderr] 24: 0x55fe40fa9561 - std::panicking::try::do_call::h53276a03c7fe2ebc [INFO] [stderr] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/panicking.rs:406:40 [INFO] [stderr] 25: 0x55fe40fa9561 - std::panicking::try::ha9e37f45dc542517 [INFO] [stderr] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/panicking.rs:370:19 [INFO] [stderr] 26: 0x55fe40fa9561 - std::panic::catch_unwind::h182647595766fee7 [INFO] [stderr] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/panic.rs:133:14 [INFO] [stderr] 27: 0x55fe40fa9561 - std::rt::lang_start_internal::h571831ebdba142de [INFO] [stderr] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/rt.rs:128:20 [INFO] [stderr] 28: 0x55fe40dad880 - std::rt::lang_start::h5d3a5f95077de24d [INFO] [stderr] at /rustc/62efba8a050c64249dab942951bb28f710208bc8/library/std/src/rt.rs:144:17 [INFO] [stderr] 29: 0x55fe40da26dc - main [INFO] [stderr] 30: 0x7f5e57b7b0b3 - __libc_start_main [INFO] [stderr] 31: 0x55fe40d9ad9e - _start [INFO] [stderr] 32: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "5d5544552cdb1d41c2ab24bbd10c0f9acb5733155b5d6e1f125e0e2c86916550", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "5d5544552cdb1d41c2ab24bbd10c0f9acb5733155b5d6e1f125e0e2c86916550", kill_on_drop: false }` [INFO] [stdout] 5d5544552cdb1d41c2ab24bbd10c0f9acb5733155b5d6e1f125e0e2c86916550