[INFO] cloning repository https://github.com/ban-m/kiley [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/ban-m/kiley" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fban-m%2Fkiley", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fban-m%2Fkiley'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 5ccdedd159bf6a76d4c2d76d54f7c19ee8f768ce [INFO] testing ban-m/kiley against master#62efba8a050c64249dab942951bb28f710208bc8 for pr-90799 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fban-m%2Fkiley" "/workspace/builds/worker-8/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-8/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/ban-m/kiley on toolchain 62efba8a050c64249dab942951bb28f710208bc8 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+62efba8a050c64249dab942951bb28f710208bc8" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/ban-m/kiley [INFO] finished tweaking git repo https://github.com/ban-m/kiley [INFO] tweaked toml for git repo https://github.com/ban-m/kiley written to /workspace/builds/worker-8/source/Cargo.toml [INFO] crate git repo https://github.com/ban-m/kiley already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+62efba8a050c64249dab942951bb28f710208bc8" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating git repository `https://github.com/ban-m/edlib-sys.git` [INFO] [stderr] Updating git repository `https://github.com/ban-m/partial_order_alignment.git` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+62efba8a050c64249dab942951bb28f710208bc8" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 3b918a86c6273237f29c6d67ced590cf349b01658d8e45e0e6025b903ac7ca86 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "3b918a86c6273237f29c6d67ced590cf349b01658d8e45e0e6025b903ac7ca86", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "3b918a86c6273237f29c6d67ced590cf349b01658d8e45e0e6025b903ac7ca86", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "3b918a86c6273237f29c6d67ced590cf349b01658d8e45e0e6025b903ac7ca86", kill_on_drop: false }` [INFO] [stdout] 3b918a86c6273237f29c6d67ced590cf349b01658d8e45e0e6025b903ac7ca86 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+62efba8a050c64249dab942951bb28f710208bc8" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] fcb5a16b0ea9a824a5d3dee71fd87e2818988a4bd999b5b29071fa0883d0b235 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "fcb5a16b0ea9a824a5d3dee71fd87e2818988a4bd999b5b29071fa0883d0b235", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.102 [INFO] [stderr] Compiling memchr v2.4.1 [INFO] [stderr] Compiling gimli v0.25.0 [INFO] [stderr] Compiling proc-macro2 v0.4.30 [INFO] [stderr] Compiling regex-syntax v0.6.25 [INFO] [stderr] Compiling termcolor v1.1.2 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling unicode-width v0.1.8 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling strsim v0.8.0 [INFO] [stderr] Compiling ansi_term v0.11.0 [INFO] [stderr] Compiling bindgen v0.50.1 [INFO] [stderr] Compiling libm v0.1.4 [INFO] [stderr] Compiling shlex v0.1.1 [INFO] [stderr] Compiling ppv-lite86 v0.2.10 [INFO] [stderr] Compiling packed_simd_2 v0.3.6 [INFO] [stderr] Compiling humantime v2.1.0 [INFO] [stderr] Compiling nom v4.2.3 [INFO] [stderr] Compiling memoffset v0.6.4 [INFO] [stderr] Compiling fxhash v0.2.1 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling humantime v1.3.0 [INFO] [stderr] Compiling crossbeam-epoch v0.9.5 [INFO] [stderr] Compiling quote v0.6.13 [INFO] [stderr] Compiling crossbeam-deque v0.8.1 [INFO] [stderr] Compiling aho-corasick v0.7.18 [INFO] [stderr] Compiling object v0.26.2 [INFO] [stderr] Compiling jobserver v0.1.24 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling getrandom v0.2.3 [INFO] [stderr] Compiling num_cpus v1.13.0 [INFO] [stderr] Compiling clap v2.33.3 [INFO] [stderr] Compiling rand_core v0.6.3 [INFO] [stderr] Compiling rayon-core v1.9.1 [INFO] [stderr] Compiling cc v1.0.70 [INFO] [stderr] Compiling cexpr v0.3.6 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling rand_xoshiro v0.6.0 [INFO] [stderr] Compiling rand v0.8.4 [INFO] [stderr] Compiling rayon v1.5.1 [INFO] [stderr] Compiling regex v1.5.4 [INFO] [stderr] Compiling backtrace v0.3.61 [INFO] [stderr] Compiling libloading v0.5.2 [INFO] [stderr] Compiling addr2line v0.16.0 [INFO] [stderr] Compiling clang-sys v0.28.1 [INFO] [stderr] Compiling env_logger v0.6.2 [INFO] [stderr] Compiling env_logger v0.9.0 [INFO] [stderr] Compiling failure v0.1.8 [INFO] [stderr] Compiling which v2.0.1 [INFO] [stderr] Compiling edlib_sys v0.1.0 (https://github.com/ban-m/edlib-sys.git?branch=master#8c8b085c) [INFO] [stderr] Compiling poa_hmm v0.2.0 (https://github.com/ban-m/partial_order_alignment.git?branch=master#b4344184) [INFO] [stderr] Compiling kiley v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 2m 07s [INFO] running `Command { std: "docker" "inspect" "fcb5a16b0ea9a824a5d3dee71fd87e2818988a4bd999b5b29071fa0883d0b235", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "fcb5a16b0ea9a824a5d3dee71fd87e2818988a4bd999b5b29071fa0883d0b235", kill_on_drop: false }` [INFO] [stdout] fcb5a16b0ea9a824a5d3dee71fd87e2818988a4bd999b5b29071fa0883d0b235 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+62efba8a050c64249dab942951bb28f710208bc8" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] c43813d094e7f330bc0c784e24318638b68df2f6f80b976482a9c5b2591bc3fa [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "c43813d094e7f330bc0c784e24318638b68df2f6f80b976482a9c5b2591bc3fa", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling kiley v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 15.69s [INFO] running `Command { std: "docker" "inspect" "c43813d094e7f330bc0c784e24318638b68df2f6f80b976482a9c5b2591bc3fa", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "c43813d094e7f330bc0c784e24318638b68df2f6f80b976482a9c5b2591bc3fa", kill_on_drop: false }` [INFO] [stdout] c43813d094e7f330bc0c784e24318638b68df2f6f80b976482a9c5b2591bc3fa [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5736fa189c1c60b01babf4b8b698fe57b6ecc41933a7ff2e0b8d7a221459412b" "/opt/rustwide/cargo-home/bin/cargo" "+62efba8a050c64249dab942951bb28f710208bc8" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] a1d941783b1ab770f448b4cf2d3205f16fc6c9ef7ba14027d5b1b2a57f3151b6 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "a1d941783b1ab770f448b4cf2d3205f16fc6c9ef7ba14027d5b1b2a57f3151b6", kill_on_drop: false }` [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.16s [INFO] [stdout] [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/kiley-1030197ab5d3b9f4) [INFO] [stdout] running 76 tests [INFO] [stdout] test bialignment::test::edist_dist_check ... ok [INFO] [stdout] test bialignment::test::edit_dist_ops_check ... ok [INFO] [stdout] test bialignment::test::edit_dist_fast_check_short ... ok [INFO] [stdout] test bialignment::test::edit_dist_deletion_banded_diff_check ... FAILED [INFO] [stdout] test bialignment::test::global_affine_check ... ok [INFO] [stdout] test bialignment::test::banded_naive_check ... ok [INFO] [stdout] test bialignment::test::edit_dist_deletion_from_check ... ok [INFO] [stdout] test bialignment::test::edit_dist_banded_backward_check has been running for over 60 seconds [INFO] [stdout] test bialignment::test::edit_dist_banded_check has been running for over 60 seconds [INFO] [stdout] test bialignment::test::edit_dist_copy_from_check has been running for over 60 seconds [INFO] [stdout] test bialignment::test::edit_dist_deletion_diff_check has been running for over 60 seconds [INFO] [stdout] test bialignment::test::edit_dist_fast_check has been running for over 60 seconds [INFO] [stdout] test bialignment::test::edit_dist_fast_check_sim has been running for over 60 seconds [INFO] [stdout] test bialignment::test::edit_dist_insertion_banded_diff_check has been running for over 60 seconds [INFO] [stdout] test bialignment::test::edit_dist_insertion_diff_check has been running for over 60 seconds [INFO] [stdout] test bialignment::test::edit_dist_modification_check has been running for over 60 seconds [INFO] [stdout] test bialignment::test::edit_dist_mutation_banded_diff_check has been running for over 60 seconds [INFO] [stdout] test bialignment::test::edit_dist_mutation_diff_check has been running for over 60 seconds [INFO] [stdout] test bialignment::test::edit_dist_post_check has been running for over 60 seconds [INFO] [stdout] test bialignment::test::global_affine_banded_check has been running for over 60 seconds [INFO] [stdout] test bialignment::test::naive_edit_dist_modification_check ... ok [INFO] [stdout] test gphmm::banded::gphmm_banded::align_test_banded has been running for over 60 seconds [INFO] [stdout] test gphmm::banded::gphmm_banded::backward_banded_test has been running for over 60 seconds [INFO] [stdout] test bialignment::test::edit_dist_mutation_banded_diff_check ... FAILED [INFO] [stdout] test gphmm::banded::gphmm_banded::fit_banded_test has been running for over 60 seconds [INFO] [stdout] test gphmm::banded::gphmm_banded::likelihood_banded_test has been running for over 60 seconds [INFO] [stdout] test bialignment::test::global_affine_banded_check ... ok [INFO] [stdout] test gphmm::banded::gphmm_banded::observation_prob_test ... ok [INFO] [stdout] test gphmm::banded::gphmm_banded::backward_banded_test ... ok [INFO] [stdout] test gphmm::banded::gphmm_banded::align_test_banded ... ok [INFO] [stdout] test gphmm::banded::gphmm_banded::profile_copy_banded_test has been running for over 60 seconds [INFO] [stdout] test gphmm::banded::gphmm_banded::likelihood_banded_test ... ok [INFO] [stdout] test gphmm::banded::gphmm_banded::profile_correction_banded_test has been running for over 60 seconds [INFO] [stdout] test gphmm::banded::gphmm_banded::profile_deletion_banded_test has been running for over 60 seconds [INFO] [stdout] test gphmm::banded::gphmm_banded::profile_insertion_banded_test has been running for over 60 seconds [INFO] [stdout] test bialignment::test::edit_dist_banded_backward_check ... ok [INFO] [stdout] test gphmm::banded::gphmm_banded::profile_lk_banded_test has been running for over 60 seconds [INFO] [stdout] test gphmm::banded::gphmm_banded::profile_lk_banded_test ... ok [ERROR] error running command: command timed out after 900 seconds [INFO] running `Command { std: "docker" "inspect" "a1d941783b1ab770f448b4cf2d3205f16fc6c9ef7ba14027d5b1b2a57f3151b6", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "a1d941783b1ab770f448b4cf2d3205f16fc6c9ef7ba14027d5b1b2a57f3151b6", kill_on_drop: false }` [INFO] [stdout] a1d941783b1ab770f448b4cf2d3205f16fc6c9ef7ba14027d5b1b2a57f3151b6