[INFO] cloning repository https://github.com/angelovangel/fastkmers
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/angelovangel/fastkmers" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fangelovangel%2Ffastkmers", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fangelovangel%2Ffastkmers'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 25dd0c5daa9f48a1949d0700e2f9e717847c025e
[INFO] testing angelovangel/fastkmers against master#62efba8a050c64249dab942951bb28f710208bc8 for pr-90799
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fangelovangel%2Ffastkmers" "/workspace/builds/worker-49/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-49/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/angelovangel/fastkmers on toolchain 62efba8a050c64249dab942951bb28f710208bc8
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+62efba8a050c64249dab942951bb28f710208bc8" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/angelovangel/fastkmers
[INFO] finished tweaking git repo https://github.com/angelovangel/fastkmers
[INFO] tweaked toml for git repo https://github.com/angelovangel/fastkmers written to /workspace/builds/worker-49/source/Cargo.toml
[INFO] crate git repo https://github.com/angelovangel/fastkmers already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+62efba8a050c64249dab942951bb28f710208bc8" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-49/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-49/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e8397a04204aaf8b9f284182a6f9e27a3c2e67044d0943b4415b160bfc957681" "/opt/rustwide/cargo-home/bin/cargo" "+62efba8a050c64249dab942951bb28f710208bc8" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 0e72320d44263781622240cda7c08669224acf3d38795eba047425763ad18fe4
[INFO] running `Command { std: "docker" "start" "-a" "0e72320d44263781622240cda7c08669224acf3d38795eba047425763ad18fe4", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "0e72320d44263781622240cda7c08669224acf3d38795eba047425763ad18fe4", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "0e72320d44263781622240cda7c08669224acf3d38795eba047425763ad18fe4", kill_on_drop: false }`
[INFO] [stdout] 0e72320d44263781622240cda7c08669224acf3d38795eba047425763ad18fe4
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-49/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-49/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e8397a04204aaf8b9f284182a6f9e27a3c2e67044d0943b4415b160bfc957681" "/opt/rustwide/cargo-home/bin/cargo" "+62efba8a050c64249dab942951bb28f710208bc8" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] d79733e3e6d242471e9befeed66edbcb34a1256884f1926993badc745a427ce9
[INFO] running `Command { std: "docker" "start" "-a" "d79733e3e6d242471e9befeed66edbcb34a1256884f1926993badc745a427ce9", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]    Compiling proc-macro2 v1.0.32
[INFO] [stderr]    Compiling autocfg v1.0.1
[INFO] [stderr]    Compiling unicode-xid v0.2.2
[INFO] [stderr]    Compiling syn v1.0.82
[INFO] [stderr]    Compiling libm v0.2.1
[INFO] [stderr]    Compiling libc v0.2.108
[INFO] [stderr]    Compiling serde_derive v1.0.130
[INFO] [stderr]    Compiling serde v1.0.130
[INFO] [stderr]    Compiling cfg-if v1.0.0
[INFO] [stderr]    Compiling memchr v2.4.1
[INFO] [stderr]    Compiling version_check v0.9.3
[INFO] [stderr]    Compiling ppv-lite86 v0.2.15
[INFO] [stderr]    Compiling unicode-segmentation v1.8.0
[INFO] [stderr]    Compiling rustversion v1.0.5
[INFO] [stderr]    Compiling lazy_static v1.4.0
[INFO] [stderr]    Compiling typenum v1.14.0
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling ryu v1.0.5
[INFO] [stderr]    Compiling rawpointer v0.2.1
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]    Compiling paste v1.0.6
[INFO] [stderr]    Compiling regex-syntax v0.6.25
[INFO] [stderr]    Compiling itoa v0.4.8
[INFO] [stderr]    Compiling hashbrown v0.11.2
[INFO] [stderr]    Compiling regex-automata v0.1.10
[INFO] [stderr]    Compiling crc32fast v1.2.2
[INFO] [stderr]    Compiling anyhow v1.0.49
[INFO] [stderr]    Compiling bio v0.39.0
[INFO] [stderr]    Compiling serde_json v1.0.72
[INFO] [stderr]    Compiling bit-vec v0.6.3
[INFO] [stderr]    Compiling byteorder v1.4.3
[INFO] [stderr]    Compiling fixedbitset v0.2.0
[INFO] [stderr]    Compiling either v1.6.1
[INFO] [stderr]    Compiling adler v1.0.2
[INFO] [stderr]    Compiling unicode-width v0.1.9
[INFO] [stderr]    Compiling ansi_term v0.11.0
[INFO] [stderr]    Compiling strsim v0.8.0
[INFO] [stderr]    Compiling triple_accel v0.4.0
[INFO] [stderr]    Compiling fnv v1.0.7
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling strum v0.21.0
[INFO] [stderr]    Compiling bitflags v1.3.2
[INFO] [stderr]    Compiling bytecount v0.6.2
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling matrixmultiply v0.3.2
[INFO] [stderr]    Compiling textwrap v0.11.0
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling itertools v0.10.1
[INFO] [stderr]    Compiling bit-set v0.5.2
[INFO] [stderr]    Compiling fxhash v0.2.1
[INFO] [stderr]    Compiling heck v0.3.3
[INFO] [stderr]    Compiling num-traits v0.2.14
[INFO] [stderr]    Compiling num-integer v0.1.44
[INFO] [stderr]    Compiling num-rational v0.4.0
[INFO] [stderr]    Compiling indexmap v1.7.0
[INFO] [stderr]    Compiling miniz_oxide v0.4.4
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling aho-corasick v0.7.18
[INFO] [stderr]    Compiling csv-core v0.1.10
[INFO] [stderr]    Compiling quote v1.0.10
[INFO] [stderr]    Compiling regex v1.5.4
[INFO] [stderr]    Compiling getrandom v0.2.3
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling rand_core v0.6.3
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling petgraph v0.5.1
[INFO] [stderr]    Compiling rand v0.8.4
[INFO] [stderr]    Compiling flate2 v1.0.22
[INFO] [stderr]    Compiling num-complex v0.4.0
[INFO] [stderr]    Compiling approx v0.5.0
[INFO] [stderr]    Compiling ordered-float v1.1.1
[INFO] [stderr]    Compiling itertools-num v0.1.3
[INFO] [stderr]    Compiling rand_distr v0.4.2
[INFO] [stderr]    Compiling simba v0.5.1
[INFO] [stderr]    Compiling ndarray v0.15.4
[INFO] [stderr]    Compiling thiserror-impl v1.0.30
[INFO] [stderr]    Compiling nalgebra-macros v0.1.0
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling strum_macros v0.23.1
[INFO] [stderr]    Compiling enum-map-derive v0.6.0
[INFO] [stderr]    Compiling strum_macros v0.21.1
[INFO] [stderr]    Compiling getset v0.1.1
[INFO] [stderr]    Compiling enum-map v1.1.1
[INFO] [stderr]    Compiling thiserror v1.0.30
[INFO] [stderr]    Compiling bio-types v0.12.1
[INFO] [stderr]    Compiling nalgebra v0.27.1
[INFO] [stderr]    Compiling bstr v0.2.17
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling multimap v0.8.3
[INFO] [stderr]    Compiling clap v2.33.3
[INFO] [stderr]    Compiling csv v1.1.6
[INFO] [stderr]    Compiling statrs v0.15.0
[INFO] [stderr]    Compiling fastkmers v0.1.1 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 1m 15s
[INFO] running `Command { std: "docker" "inspect" "d79733e3e6d242471e9befeed66edbcb34a1256884f1926993badc745a427ce9", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "d79733e3e6d242471e9befeed66edbcb34a1256884f1926993badc745a427ce9", kill_on_drop: false }`
[INFO] [stdout] d79733e3e6d242471e9befeed66edbcb34a1256884f1926993badc745a427ce9
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-49/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-49/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e8397a04204aaf8b9f284182a6f9e27a3c2e67044d0943b4415b160bfc957681" "/opt/rustwide/cargo-home/bin/cargo" "+62efba8a050c64249dab942951bb28f710208bc8" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] f481ba6b72137818a0a92dce4de69a2f38636b6f60e2bdf0228ef38296b9c368
[INFO] running `Command { std: "docker" "start" "-a" "f481ba6b72137818a0a92dce4de69a2f38636b6f60e2bdf0228ef38296b9c368", kill_on_drop: false }`
[INFO] [stderr]    Compiling escargot v0.3.1
[INFO] [stderr]    Compiling predicates-core v1.0.2
[INFO] [stderr]    Compiling termtree v0.2.3
[INFO] [stderr]    Compiling normalize-line-endings v0.3.0
[INFO] [stderr]    Compiling difference v2.0.0
[INFO] [stderr]    Compiling float-cmp v0.8.0
[INFO] [stderr]    Compiling predicates-tree v1.0.4
[INFO] [stderr]    Compiling predicates v1.0.8
[INFO] [stderr]    Compiling assert_cmd v0.10.2
[INFO] [stderr]    Compiling fastkmers v0.1.1 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 2.00s
[INFO] running `Command { std: "docker" "inspect" "f481ba6b72137818a0a92dce4de69a2f38636b6f60e2bdf0228ef38296b9c368", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "f481ba6b72137818a0a92dce4de69a2f38636b6f60e2bdf0228ef38296b9c368", kill_on_drop: false }`
[INFO] [stdout] f481ba6b72137818a0a92dce4de69a2f38636b6f60e2bdf0228ef38296b9c368
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-49/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-49/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e8397a04204aaf8b9f284182a6f9e27a3c2e67044d0943b4415b160bfc957681" "/opt/rustwide/cargo-home/bin/cargo" "+62efba8a050c64249dab942951bb28f710208bc8" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 5e8c90fb15503304bb6e8a834f4b58dab4bf517190a360ecd71fe424affc5845
[INFO] running `Command { std: "docker" "start" "-a" "5e8c90fb15503304bb6e8a834f4b58dab4bf517190a360ecd71fe424affc5845", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 6.63s
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/fastkmers-31e6d047de96f953)
[INFO] [stdout] 
[INFO] [stderr]      Running tests/cli.rs (/opt/rustwide/target/debug/deps/cli-70438f3cf5148bb1)
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 4 tests
[INFO] [stdout] test test_freq has been running for over 60 seconds
[INFO] [stdout] test test_kmer_fasta has been running for over 60 seconds
[INFO] [stdout] test test_kmer_fastq has been running for over 60 seconds
[INFO] [stdout] test test_regex has been running for over 60 seconds
[INFO] [stdout] test test_freq ... ok
[INFO] [stdout] test test_kmer_fastq ... ok
[INFO] [stdout] test test_regex ... ok
[INFO] [stdout] test test_kmer_fasta ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 4 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 144.22s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "5e8c90fb15503304bb6e8a834f4b58dab4bf517190a360ecd71fe424affc5845", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "5e8c90fb15503304bb6e8a834f4b58dab4bf517190a360ecd71fe424affc5845", kill_on_drop: false }`
[INFO] [stdout] 5e8c90fb15503304bb6e8a834f4b58dab4bf517190a360ecd71fe424affc5845