[INFO] cloning repository https://github.com/38/pyd4 [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/38/pyd4" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F38%2Fpyd4", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F38%2Fpyd4'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 163ae6a7bcd4b7a0141cbf089c86c59c599b30ce [INFO] checking 38/pyd4 against try#8de4b308b608cded0ebccf658a0fc719bce87d4e for pr-89056 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F38%2Fpyd4" "/workspace/builds/worker-20/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-20/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/38/pyd4 on toolchain 8de4b308b608cded0ebccf658a0fc719bce87d4e [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+8de4b308b608cded0ebccf658a0fc719bce87d4e" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/38/pyd4 [INFO] finished tweaking git repo https://github.com/38/pyd4 [INFO] tweaked toml for git repo https://github.com/38/pyd4 written to /workspace/builds/worker-20/source/Cargo.toml [INFO] crate git repo https://github.com/38/pyd4 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+8de4b308b608cded0ebccf658a0fc719bce87d4e" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded ctor v0.1.20 [INFO] [stderr] Downloaded paste v0.1.18 [INFO] [stderr] Downloaded indoc-impl v0.3.6 [INFO] [stderr] Downloaded indoc v0.3.6 [INFO] [stderr] Downloaded serde v1.0.127 [INFO] [stderr] Downloaded serde_derive v1.0.127 [INFO] [stderr] Downloaded bindgen v0.55.1 [INFO] [stderr] Downloaded inventory-impl v0.1.10 [INFO] [stderr] Downloaded ghost v0.1.2 [INFO] [stderr] Downloaded pyo3-derive-backend v0.12.4 [INFO] [stderr] Downloaded pyo3 v0.12.4 [INFO] [stderr] Downloaded inventory v0.1.10 [INFO] [stderr] Downloaded paste-impl v0.1.18 [INFO] [stderr] Downloaded d4-framefile v0.1.18 [INFO] [stderr] Downloaded d4-hts v0.1.18 [INFO] [stderr] Downloaded d4 v0.1.18 [INFO] [stderr] Downloaded pyo3cls v0.12.4 [INFO] [stderr] Downloaded unindent v0.1.7 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-20/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-20/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+8de4b308b608cded0ebccf658a0fc719bce87d4e" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] e6ac33e5eb44f65171f686f49dbbbb75f45880877a125111a9a5cf4365eead95 [INFO] running `Command { std: "docker" "start" "-a" "e6ac33e5eb44f65171f686f49dbbbb75f45880877a125111a9a5cf4365eead95", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "e6ac33e5eb44f65171f686f49dbbbb75f45880877a125111a9a5cf4365eead95", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "e6ac33e5eb44f65171f686f49dbbbb75f45880877a125111a9a5cf4365eead95", kill_on_drop: false }` [INFO] [stdout] e6ac33e5eb44f65171f686f49dbbbb75f45880877a125111a9a5cf4365eead95 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-20/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-20/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+8de4b308b608cded0ebccf658a0fc719bce87d4e" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] ebcc77196b5e9bfb986d945b48b5eebfdebf3084a25688ee68863f0ccc4b6e44 [INFO] running `Command { std: "docker" "start" "-a" "ebcc77196b5e9bfb986d945b48b5eebfdebf3084a25688ee68863f0ccc4b6e44", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling libc v0.2.99 [INFO] [stderr] Compiling proc-macro2 v1.0.28 [INFO] [stderr] Compiling syn v1.0.74 [INFO] [stderr] Compiling memchr v2.4.1 [INFO] [stderr] Compiling cfg-if v1.0.0 [INFO] [stderr] Compiling log v0.4.14 [INFO] [stderr] Compiling crossbeam-utils v0.8.5 [INFO] [stderr] Compiling unicode-width v0.1.8 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling getrandom v0.1.16 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling bindgen v0.55.1 [INFO] [stderr] Compiling bitflags v1.3.2 [INFO] [stderr] Compiling strsim v0.8.0 [INFO] [stderr] Compiling ansi_term v0.11.0 [INFO] [stderr] Compiling crossbeam-epoch v0.9.5 [INFO] [stderr] Compiling shlex v0.1.1 [INFO] [stderr] Compiling peeking_take_while v0.1.2 [INFO] [stderr] Compiling crc32fast v1.2.1 [INFO] [stderr] Compiling serde v1.0.127 [INFO] [stderr] Compiling rustc-hash v1.1.0 [INFO] [stderr] Compiling rayon-core v1.9.1 [INFO] [stderr] Compiling lazycell v1.3.0 [INFO] [stderr] Checking adler v1.0.2 [INFO] [stderr] Checking ppv-lite86 v0.2.10 [INFO] [stderr] Checking smallvec v1.6.1 [INFO] [stderr] Compiling serde_derive v1.0.127 [INFO] [stderr] Compiling unindent v0.1.7 [INFO] [stderr] Compiling serde_json v1.0.66 [INFO] [stderr] Compiling inventory v0.1.10 [INFO] [stderr] Compiling pyo3 v0.12.4 [INFO] [stderr] Compiling nom v5.1.2 [INFO] [stderr] Compiling clang-sys v1.2.0 [INFO] [stderr] Compiling memoffset v0.6.4 [INFO] [stderr] Compiling miniz_oxide v0.4.4 [INFO] [stderr] Compiling rayon v1.5.1 [INFO] [stderr] Checking instant v0.1.10 [INFO] [stderr] Checking lock_api v0.4.4 [INFO] [stderr] Compiling paste-impl v0.1.18 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling humantime v1.3.0 [INFO] [stderr] Compiling libloading v0.7.0 [INFO] [stderr] Checking crossbeam-channel v0.5.1 [INFO] [stderr] Compiling aho-corasick v0.7.18 [INFO] [stderr] Checking paste v0.1.18 [INFO] [stderr] Compiling quote v1.0.9 [INFO] [stderr] Checking crossbeam-deque v0.8.1 [INFO] [stderr] Checking num_cpus v1.13.0 [INFO] [stderr] Checking parking_lot_core v0.8.3 [INFO] [stderr] Checking flate2 v1.0.20 [INFO] [stderr] Checking memmap v0.7.0 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling which v3.1.1 [INFO] [stderr] Compiling clap v2.33.3 [INFO] [stderr] Checking rand_core v0.5.1 [INFO] [stderr] Checking parking_lot v0.11.1 [INFO] [stderr] Checking rand_chacha v0.2.2 [INFO] [stderr] Compiling regex v1.5.4 [INFO] [stderr] Checking rand v0.7.3 [INFO] [stderr] Compiling cexpr v0.4.0 [INFO] [stderr] Compiling env_logger v0.7.1 [INFO] [stderr] Checking d4-framefile v0.1.18 [INFO] [stderr] Compiling pyo3-derive-backend v0.12.4 [INFO] [stderr] Compiling ghost v0.1.2 [INFO] [stderr] Compiling inventory-impl v0.1.10 [INFO] [stderr] Compiling indoc-impl v0.3.6 [INFO] [stderr] Compiling ctor v0.1.20 [INFO] [stderr] Compiling pyo3cls v0.12.4 [INFO] [stderr] Checking indoc v0.3.6 [INFO] [stderr] Compiling d4-hts v0.1.18 [INFO] [stderr] error: failed to run custom build command for `d4-hts v0.1.18` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/d4-hts-5f710dac87a20570/build-script-build` (exit status: 101) [INFO] [stderr] --- stderr [INFO] [stderr] + pushd /opt/rustwide/target/debug/build/d4-hts-76cff53fe2444096/out [INFO] [stderr] + HTSLIB_VERSION=1.11 [INFO] [stderr] + rm -rf /opt/rustwide/target/debug/build/d4-hts-76cff53fe2444096/out/htslib [INFO] [stderr] + git clone -b 1.11 https://github.com/samtools/htslib.git [INFO] [stderr] Cloning into 'htslib'... [INFO] [stderr] fatal: unable to access 'https://github.com/samtools/htslib.git/': Could not resolve host: github.com [INFO] [stderr] thread 'main' panicked at 'assertion failed: Command::new(\"bash\").args(&[\"build_htslib.sh\",\n &version]).stdout(std::process::Stdio::null()).spawn().expect(\"Unable to build htslib\").wait().unwrap().success()', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/d4-hts-0.1.18/build.rs:33:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x56253d7ad4cc - std::backtrace_rs::backtrace::libunwind::trace::h2ab374bc2a3b7023 [INFO] [stderr] at /rustc/8de4b308b608cded0ebccf658a0fc719bce87d4e/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stderr] 1: 0x56253d7ad4cc - std::backtrace_rs::backtrace::trace_unsynchronized::h128cb5178b04dc46 [INFO] [stderr] at /rustc/8de4b308b608cded0ebccf658a0fc719bce87d4e/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x56253d7ad4cc - std::sys_common::backtrace::_print_fmt::h5344f9eefca2041f [INFO] [stderr] at /rustc/8de4b308b608cded0ebccf658a0fc719bce87d4e/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x56253d7ad4cc - ::fmt::h213003bc5c7acf04 [INFO] [stderr] at /rustc/8de4b308b608cded0ebccf658a0fc719bce87d4e/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x56253d7d2d3c - core::fmt::write::h78bf85fc3e93663f [INFO] [stderr] at /rustc/8de4b308b608cded0ebccf658a0fc719bce87d4e/library/core/src/fmt/mod.rs:1126:17 [INFO] [stderr] 5: 0x56253d7a9fe5 - std::io::Write::write_fmt::he619515c888f21a5 [INFO] [stderr] at /rustc/8de4b308b608cded0ebccf658a0fc719bce87d4e/library/std/src/io/mod.rs:1667:15 [INFO] [stderr] 6: 0x56253d7af380 - std::sys_common::backtrace::_print::hf706674f77848203 [INFO] [stderr] at /rustc/8de4b308b608cded0ebccf658a0fc719bce87d4e/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x56253d7af380 - std::sys_common::backtrace::print::hf0b6c7a88804ec56 [INFO] [stderr] at /rustc/8de4b308b608cded0ebccf658a0fc719bce87d4e/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x56253d7af380 - std::panicking::default_hook::{{closure}}::h2dde766cd83a333a [INFO] [stderr] at /rustc/8de4b308b608cded0ebccf658a0fc719bce87d4e/library/std/src/panicking.rs:210:50 [INFO] [stderr] 9: 0x56253d7aef37 - std::panicking::default_hook::h501e3b2e134eb149 [INFO] [stderr] at /rustc/8de4b308b608cded0ebccf658a0fc719bce87d4e/library/std/src/panicking.rs:227:9 [INFO] [stderr] 10: 0x56253d7afa34 - std::panicking::rust_panic_with_hook::hc09e869c4cf00885 [INFO] [stderr] at /rustc/8de4b308b608cded0ebccf658a0fc719bce87d4e/library/std/src/panicking.rs:624:17 [INFO] [stderr] 11: 0x56253d7af4e2 - std::panicking::begin_panic_handler::{{closure}}::hc2c6d70142458fc8 [INFO] [stderr] at /rustc/8de4b308b608cded0ebccf658a0fc719bce87d4e/library/std/src/panicking.rs:519:13 [INFO] [stderr] 12: 0x56253d7ad974 - std::sys_common::backtrace::__rust_end_short_backtrace::had58f7c459a1cd6e [INFO] [stderr] at /rustc/8de4b308b608cded0ebccf658a0fc719bce87d4e/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x56253d7af479 - rust_begin_unwind [INFO] [stderr] at /rustc/8de4b308b608cded0ebccf658a0fc719bce87d4e/library/std/src/panicking.rs:517:5 [INFO] [stderr] 14: 0x56253d25b8a1 - core::panicking::panic_fmt::hf443e5eeb6cc9eab [INFO] [stderr] at /rustc/8de4b308b608cded0ebccf658a0fc719bce87d4e/library/core/src/panicking.rs:103:14 [INFO] [stderr] 15: 0x56253d25b7ed - core::panicking::panic::h50b51d19800453c0 [INFO] [stderr] at /rustc/8de4b308b608cded0ebccf658a0fc719bce87d4e/library/core/src/panicking.rs:50:5 [INFO] [stderr] 16: 0x56253d25cecd - build_script_build::build_own_htslib::hd80e39c78bf2545f [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/d4-hts-0.1.18/build.rs:33:5 [INFO] [stderr] 17: 0x56253d25d33e - build_script_build::main::h713d73d4ea7c9ee8 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/d4-hts-0.1.18/build.rs:65:9 [INFO] [stderr] 18: 0x56253d25e51b - core::ops::function::FnOnce::call_once::h9e24d807451f79f0 [INFO] [stderr] at /rustc/8de4b308b608cded0ebccf658a0fc719bce87d4e/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 19: 0x56253d25d98e - std::sys_common::backtrace::__rust_begin_short_backtrace::hfffa06ff03ae2792 [INFO] [stderr] at /rustc/8de4b308b608cded0ebccf658a0fc719bce87d4e/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 20: 0x56253d260b21 - std::rt::lang_start::{{closure}}::h0010cb2b7ad24870 [INFO] [stderr] at /rustc/8de4b308b608cded0ebccf658a0fc719bce87d4e/library/std/src/rt.rs:64:18 [INFO] [stderr] 21: 0x56253d7b003a - core::ops::function::impls:: for &F>::call_once::hab43eb8ec758341e [INFO] [stderr] at /rustc/8de4b308b608cded0ebccf658a0fc719bce87d4e/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 22: 0x56253d7b003a - std::panicking::try::do_call::hb667fefd650e964d [INFO] [stderr] at /rustc/8de4b308b608cded0ebccf658a0fc719bce87d4e/library/std/src/panicking.rs:403:40 [INFO] [stderr] 23: 0x56253d7b003a - std::panicking::try::hc279775c9409768d [INFO] [stderr] at /rustc/8de4b308b608cded0ebccf658a0fc719bce87d4e/library/std/src/panicking.rs:367:19 [INFO] [stderr] 24: 0x56253d7b003a - std::panic::catch_unwind::hbe8b6ecc84f73073 [INFO] [stderr] at /rustc/8de4b308b608cded0ebccf658a0fc719bce87d4e/library/std/src/panic.rs:133:14 [INFO] [stderr] 25: 0x56253d7b003a - std::rt::lang_start_internal::{{closure}}::hb04fdaef496a162b [INFO] [stderr] at /rustc/8de4b308b608cded0ebccf658a0fc719bce87d4e/library/std/src/rt.rs:46:48 [INFO] [stderr] 26: 0x56253d7b003a - std::panicking::try::do_call::habca359de051411d [INFO] [stderr] at /rustc/8de4b308b608cded0ebccf658a0fc719bce87d4e/library/std/src/panicking.rs:403:40 [INFO] [stderr] 27: 0x56253d7b003a - std::panicking::try::h24c556a6948e0937 [INFO] [stderr] at /rustc/8de4b308b608cded0ebccf658a0fc719bce87d4e/library/std/src/panicking.rs:367:19 [INFO] [stderr] 28: 0x56253d7b003a - std::panic::catch_unwind::h58075d47f5a308d8 [INFO] [stderr] at /rustc/8de4b308b608cded0ebccf658a0fc719bce87d4e/library/std/src/panic.rs:133:14 [INFO] [stderr] 29: 0x56253d7b003a - std::rt::lang_start_internal::h3d20dc1537d76758 [INFO] [stderr] at /rustc/8de4b308b608cded0ebccf658a0fc719bce87d4e/library/std/src/rt.rs:46:20 [INFO] [stderr] 30: 0x56253d260af0 - std::rt::lang_start::h198e5f43b9fb203c [INFO] [stderr] at /rustc/8de4b308b608cded0ebccf658a0fc719bce87d4e/library/std/src/rt.rs:63:17 [INFO] [stderr] 31: 0x56253d25d97c - main [INFO] [stderr] 32: 0x7fef658590b3 - __libc_start_main [INFO] [stderr] 33: 0x56253d25c09e - _start [INFO] [stderr] 34: 0x0 - [INFO] running `Command { std: "docker" "inspect" "ebcc77196b5e9bfb986d945b48b5eebfdebf3084a25688ee68863f0ccc4b6e44", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "ebcc77196b5e9bfb986d945b48b5eebfdebf3084a25688ee68863f0ccc4b6e44", kill_on_drop: false }` [INFO] [stdout] ebcc77196b5e9bfb986d945b48b5eebfdebf3084a25688ee68863f0ccc4b6e44