[INFO] fetching crate rust-bio-tools 0.27.0...
[INFO] checking rust-bio-tools-0.27.0 against master#db1fb85cff63ad5fffe435e17128f99f9e1d970c for pr-89056
[INFO] extracting crate rust-bio-tools 0.27.0 into /workspace/builds/worker-0/source
[INFO] validating manifest of crates.io crate rust-bio-tools 0.27.0 on toolchain db1fb85cff63ad5fffe435e17128f99f9e1d970c
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+db1fb85cff63ad5fffe435e17128f99f9e1d970c" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] removed /workspace/builds/worker-0/source/.cargo/config
[INFO] started tweaking crates.io crate rust-bio-tools 0.27.0
[INFO] finished tweaking crates.io crate rust-bio-tools 0.27.0
[INFO] tweaked toml for crates.io crate rust-bio-tools 0.27.0 written to /workspace/builds/worker-0/source/Cargo.toml
[INFO] crate crates.io crate rust-bio-tools 0.27.0 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+db1fb85cff63ad5fffe435e17128f99f9e1d970c" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+db1fb85cff63ad5fffe435e17128f99f9e1d970c" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 611508d0134cfef59a84099167d7b8aa5d916f906b695ae65b32398320f6274d
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "611508d0134cfef59a84099167d7b8aa5d916f906b695ae65b32398320f6274d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "611508d0134cfef59a84099167d7b8aa5d916f906b695ae65b32398320f6274d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "611508d0134cfef59a84099167d7b8aa5d916f906b695ae65b32398320f6274d", kill_on_drop: false }`
[INFO] [stdout] 611508d0134cfef59a84099167d7b8aa5d916f906b695ae65b32398320f6274d
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+db1fb85cff63ad5fffe435e17128f99f9e1d970c" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] 7aeb43634c383b2ebdbbd466be85cbc20da2d09a0b3ababfc0f827e254ac734e
[INFO] running `Command { std: "docker" "start" "-a" "7aeb43634c383b2ebdbbd466be85cbc20da2d09a0b3ababfc0f827e254ac734e", kill_on_drop: false }`
[INFO] [stderr]    Compiling autocfg v1.0.1
[INFO] [stderr]    Compiling unicode-xid v0.2.2
[INFO] [stderr]     Checking cfg-if v1.0.0
[INFO] [stderr]    Compiling version_check v0.9.3
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[INFO] [stderr]    Compiling pkg-config v0.3.19
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[INFO] [stderr]    Compiling autocfg v0.1.7
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[INFO] [stderr]     Checking slab v0.4.4
[INFO] [stderr]    Compiling lazycell v1.3.0
[INFO] [stderr]    Compiling peeking_take_while v0.1.2
[INFO] [stderr]    Compiling shlex v1.0.0
[INFO] [stderr]     Checking unicode-bidi v0.3.6
[INFO] [stderr]    Compiling rustc-hash v1.1.0
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[INFO] [stderr]    Compiling ansi_term v0.11.0
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[INFO] [stderr]    Compiling bindgen v0.59.1
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[INFO] [stderr]    Compiling crossbeam-epoch v0.9.5
[INFO] [stderr]    Compiling httparse v1.5.1
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[INFO] [stderr]     Checking foreign-types-shared v0.1.1
[INFO] [stderr]     Checking same-file v1.0.6
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[INFO] [stderr]    Compiling crc32fast v1.2.1
[INFO] [stderr]     Checking try-lock v0.2.3
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[INFO] [stderr]    Compiling native-tls v0.2.8
[INFO] [stderr]     Checking rustc-demangle v0.1.21
[INFO] [stderr]    Compiling rayon-core v1.9.1
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[INFO] [stderr]     Checking bit-vec v0.6.3
[INFO] [stderr]     Checking void v1.0.2
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[INFO] [stderr]     Checking c_vec v1.0.12
[INFO] [stderr]     Checking remove_dir_all v0.5.3
[INFO] [stderr]     Checking rustc-serialize v0.3.24
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[INFO] [stderr]    Compiling syn v1.0.75
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[INFO] [stderr]    Compiling serde v1.0.129
[INFO] [stderr]     Checking base64 v0.10.1
[INFO] [stderr]    Compiling libloading v0.7.0
[INFO] [stderr]     Checking instant v0.1.10
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[INFO] [stderr]     Checking lock_api v0.3.4
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[INFO] [stderr]     Checking tinyvec v1.3.1
[INFO] [stderr]     Checking itertools v0.9.0
[INFO] [stderr]    Compiling semver v0.9.0
[INFO] [stderr]     Checking rand_core v0.3.1
[INFO] [stderr]     Checking rand_jitter v0.1.4
[INFO] [stderr]    Compiling num-traits v0.2.14
[INFO] [stderr]    Compiling crossbeam-utils v0.7.2
[INFO] [stderr]    Compiling indexmap v1.7.0
[INFO] [stderr]    Compiling memoffset v0.5.6
[INFO] [stderr]    Compiling num-integer v0.1.44
[INFO] [stderr]    Compiling crossbeam-epoch v0.8.2
[INFO] [stderr]    Compiling miniz_oxide v0.4.4
[INFO] [stderr]    Compiling memoffset v0.6.4
[INFO] [stderr]    Compiling num-complex v0.2.4
[INFO] [stderr]    Compiling rayon v1.5.1
[INFO] [stderr]    Compiling nom v6.2.1
[INFO] [stderr]    Compiling nom v5.1.2
[INFO] [stderr]    Compiling unicase v2.6.0
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling rand_chacha v0.1.1
[INFO] [stderr]    Compiling rand_pcg v0.1.2
[INFO] [stderr]    Compiling rand v0.6.5
[INFO] [stderr]     Checking thread_local v1.1.3
[INFO] [stderr]    Compiling clang-sys v1.2.1
[INFO] [stderr]    Compiling textwrap v0.11.0
[INFO] [stderr]    Compiling GSL v1.1.0
[INFO] [stderr]     Checking form_urlencoded v1.0.1
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]     Checking foreign-types v0.3.2
[INFO] [stderr]     Checking walkdir v2.3.2
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[INFO] [stderr]     Checking unic-char-property v0.9.0
[INFO] [stderr]     Checking unreachable v1.0.0
[INFO] [stderr]    Compiling libc v0.2.100
[INFO] [stderr]    Compiling proc-macro2 v1.0.28
[INFO] [stderr]     Checking bit-set v0.5.2
[INFO] [stderr]     Checking rand_hc v0.1.0
[INFO] [stderr]     Checking rand_xorshift v0.1.1
[INFO] [stderr]     Checking rand_isaac v0.1.1
[INFO] [stderr]    Compiling rustc_version v0.2.3
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking unicode-normalization v0.1.19
[INFO] [stderr]     Checking iovec v0.1.4
[INFO] [stderr]     Checking num_cpus v1.13.0
[INFO] [stderr]     Checking time v0.1.43
[INFO] [stderr]     Checking net2 v0.2.37
[INFO] [stderr]     Checking getrandom v0.2.3
[INFO] [stderr]     Checking rand_os v0.1.3
[INFO] [stderr]     Checking parking_lot_core v0.8.3
[INFO] [stderr]     Checking terminal_size v0.1.17
[INFO] [stderr]     Checking csv-core v0.1.10
[INFO] [stderr]     Checking unic-ucd-segment v0.9.0
[INFO] [stderr]     Checking addr2line v0.15.2
[INFO] [stderr]     Checking smallvec v0.6.14
[INFO] [stderr]     Checking want v0.2.0
[INFO] [stderr]    Compiling quote v1.0.9
[INFO] [stderr]     Checking bytes v0.4.12
[INFO] [stderr]    Compiling jobserver v0.1.24
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling which v3.1.1
[INFO] [stderr]     Checking crossbeam-channel v0.5.1
[INFO] [stderr]     Checking futures-cpupool v0.1.8
[INFO] [stderr]    Compiling bitvec v0.19.5
[INFO] [stderr]     Checking rand_core v0.5.1
[INFO] [stderr]     Checking mio v0.6.23
[INFO] [stderr]    Compiling regex v1.4.6
[INFO] [stderr]    Compiling parking_lot_core v0.6.2
[INFO] [stderr]    Compiling parking_lot v0.9.0
[INFO] [stderr]    Compiling hyper v0.12.36
[INFO] [stderr]     Checking rand_core v0.6.3
[INFO] [stderr]     Checking parking_lot v0.11.1
[INFO] [stderr]     Checking unic-segment v0.9.0
[INFO] [stderr]     Checking idna v0.1.5
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[INFO] [stderr]    Compiling mime_guess v2.0.3
[INFO] [stderr]     Checking tokio-executor v0.1.10
[INFO] [stderr]     Checking crossbeam-queue v0.2.3
[INFO] [stderr]     Checking flate2 v1.0.20
[INFO] [stderr]     Checking petgraph v0.5.1
[INFO] [stderr]    Compiling cc v1.0.69
[INFO] [stderr]     Checking rand_chacha v0.2.2
[INFO] [stderr]     Checking tokio-io v0.1.13
[INFO] [stderr]     Checking http v0.1.21
[INFO] [stderr]     Checking tokio-buf v0.1.1
[INFO] [stderr]     Checking string v0.2.1
[INFO] [stderr]    Compiling derefable v0.1.0
[INFO] [stderr]     Checking num-traits v0.1.43
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]     Checking approx v0.3.2
[INFO] [stderr]     Checking number_prefix v0.2.8
[INFO] [stderr]     Checking ordered-float v1.1.1
[INFO] [stderr]     Checking streaming-stats v0.2.3
[INFO] [stderr]     Checking approx v0.4.0
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]     Checking crossbeam-deque v0.8.1
[INFO] [stderr]     Checking tokio-timer v0.2.13
[INFO] [stderr]     Checking tokio-current-thread v0.1.7
[INFO] [stderr]     Checking console v0.14.1
[INFO] [stderr]     Checking crossbeam-deque v0.7.4
[INFO] [stderr]     Checking rand v0.7.3
[INFO] [stderr]     Checking url v1.7.2
[INFO] [stderr]     Checking url v2.2.2
[INFO] [stderr]    Compiling env_logger v0.8.4
[INFO] [stderr]    Compiling parse-zoneinfo v0.3.0
[INFO] [stderr]    Compiling openssl-src v111.16.0+1.1.1l
[INFO] [stderr]     Checking chrono v0.4.19
[INFO] [stderr]     Checking ordered-float v0.5.2
[INFO] [stderr]    Compiling cexpr v0.4.0
[INFO] [stderr]     Checking uuid v0.7.4
[INFO] [stderr]     Checking ndarray v0.13.1
[INFO] [stderr]     Checking rand v0.8.4
[INFO] [stderr]     Checking tokio-threadpool v0.1.18
[INFO] [stderr]     Checking indicatif v0.11.0
[INFO] [stderr]    Compiling openssl-sys v0.9.66
[INFO] [stderr]    Compiling libz-sys v1.1.3
[INFO] [stderr]    Compiling lzma-sys v0.1.17
[INFO] [stderr]    Compiling bzip2-sys v0.1.11+1.0.8
[INFO] [stderr]    Compiling backtrace v0.3.59
[INFO] [stderr]    Compiling curl-sys v0.4.45+curl-7.78.0
[INFO] [stderr]    Compiling hts-sys v1.11.1-fix2
[INFO] [stderr]     Checking cookie v0.12.0
[INFO] [stderr]     Checking publicsuffix v1.5.6
[INFO] [stderr]     Checking http-body v0.1.0
[INFO] [stderr]     Checking h2 v0.1.26
[INFO] [stderr]     Checking statrs v0.12.0
[INFO] [stderr]     Checking fern v0.5.9
[INFO] [stderr]     Checking tempfile v3.2.0
[INFO] [stderr]     Checking tokio-reactor v0.1.12
[INFO] [stderr]     Checking tokio-tcp v0.1.4
[INFO] [stderr]     Checking tokio v0.1.22
[INFO] [stderr]    Compiling chrono-tz v0.5.3
[INFO] [stderr]    Compiling synstructure v0.12.5
[INFO] [stderr]    Compiling pest_generator v2.1.3
[INFO] [stderr]    Compiling cexpr v0.5.0
[INFO] [stderr]    Compiling thiserror-impl v1.0.26
[INFO] [stderr]    Compiling failure_derive v0.1.8
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling strum_macros v0.20.1
[INFO] [stderr]    Compiling enum-map-derive v0.4.6
[INFO] [stderr]    Compiling snafu-derive v0.6.10
[INFO] [stderr]    Compiling strum_macros v0.18.0
[INFO] [stderr]    Compiling getset v0.0.9
[INFO] [stderr]    Compiling structopt-derive v0.4.15
[INFO] [stderr]    Compiling pest_derive v2.1.0
[INFO] [stderr]     Checking enum-map v0.6.4
[INFO] [stderr]     Checking failure v0.1.8
[INFO] [stderr] error: could not compile `bindgen`
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `rustc --crate-name bindgen --edition=2018 /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/bindgen-0.59.1/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no -C debuginfo=2 --cfg 'feature="runtime"' -C metadata=f76c5c4e50ef2639 -C extra-filename=-f76c5c4e50ef2639 --out-dir /opt/rustwide/target/debug/deps -L dependency=/opt/rustwide/target/debug/deps --extern bitflags=/opt/rustwide/target/debug/deps/libbitflags-05dfd5b5d1225bed.rmeta --extern cexpr=/opt/rustwide/target/debug/deps/libcexpr-4b46b4b8f9661828.rmeta --extern clang_sys=/opt/rustwide/target/debug/deps/libclang_sys-f5d85f7476c47218.rmeta --extern lazy_static=/opt/rustwide/target/debug/deps/liblazy_static-b33cd6b8ee13db74.rmeta --extern lazycell=/opt/rustwide/target/debug/deps/liblazycell-d2ae0c144988a8f0.rmeta --extern peeking_take_while=/opt/rustwide/target/debug/deps/libpeeking_take_while-321cc037074b2330.rmeta --extern proc_macro2=/opt/rustwide/target/debug/deps/libproc_macro2-72dd94e62781faf3.rmeta --extern quote=/opt/rustwide/target/debug/deps/libquote-754b571958ad5368.rmeta --extern regex=/opt/rustwide/target/debug/deps/libregex-c05b62bf93f1665f.rmeta --extern rustc_hash=/opt/rustwide/target/debug/deps/librustc_hash-91c665a5e97266ba.rmeta --extern shlex=/opt/rustwide/target/debug/deps/libshlex-e4f04246e776ba53.rmeta --cap-lints allow --cap-lints=forbid` (signal: 9, SIGKILL: kill)
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] [stderr] error: build failed
[INFO] running `Command { std: "docker" "inspect" "7aeb43634c383b2ebdbbd466be85cbc20da2d09a0b3ababfc0f827e254ac734e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "7aeb43634c383b2ebdbbd466be85cbc20da2d09a0b3ababfc0f827e254ac734e", kill_on_drop: false }`
[INFO] [stdout] 7aeb43634c383b2ebdbbd466be85cbc20da2d09a0b3ababfc0f827e254ac734e