[INFO] fetching crate hdf5 0.7.1... [INFO] checking hdf5-0.7.1 against master#db1fb85cff63ad5fffe435e17128f99f9e1d970c for pr-89056 [INFO] extracting crate hdf5 0.7.1 into /workspace/builds/worker-54/source [INFO] validating manifest of crates.io crate hdf5 0.7.1 on toolchain db1fb85cff63ad5fffe435e17128f99f9e1d970c [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+db1fb85cff63ad5fffe435e17128f99f9e1d970c" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate hdf5 0.7.1 [INFO] finished tweaking crates.io crate hdf5 0.7.1 [INFO] tweaked toml for crates.io crate hdf5 0.7.1 written to /workspace/builds/worker-54/source/Cargo.toml [INFO] crate crates.io crate hdf5 0.7.1 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+db1fb85cff63ad5fffe435e17128f99f9e1d970c" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded paste v1.0.4 [INFO] [stderr] Downloaded mpi-sys v0.1.2 [INFO] [stderr] Downloaded build-probe-mpi v0.1.1 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-54/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-54/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+db1fb85cff63ad5fffe435e17128f99f9e1d970c" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 2f44de267687c6722ce9c74fd2181be619bb0980797e208a480f9ec904478453 [INFO] running `Command { std: "docker" "start" "-a" "2f44de267687c6722ce9c74fd2181be619bb0980797e208a480f9ec904478453", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "2f44de267687c6722ce9c74fd2181be619bb0980797e208a480f9ec904478453", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "2f44de267687c6722ce9c74fd2181be619bb0980797e208a480f9ec904478453", kill_on_drop: false }` [INFO] [stdout] 2f44de267687c6722ce9c74fd2181be619bb0980797e208a480f9ec904478453 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-54/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-54/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+db1fb85cff63ad5fffe435e17128f99f9e1d970c" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] e925af1fef9a802f4ef45b9f38cae71b256cdc22c053bc2af0184c5adf72376d [INFO] running `Command { std: "docker" "start" "-a" "e925af1fef9a802f4ef45b9f38cae71b256cdc22c053bc2af0184c5adf72376d", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling libc v0.2.74 [INFO] [stderr] Compiling memchr v2.3.3 [INFO] [stderr] Compiling autocfg v1.0.0 [INFO] [stderr] Compiling libloading v0.6.2 [INFO] [stderr] Compiling proc-macro2 v1.0.19 [INFO] [stderr] Compiling regex-syntax v0.6.18 [INFO] [stderr] Compiling getrandom v0.2.2 [INFO] [stderr] Compiling unicode-xid v0.2.1 [INFO] [stderr] Compiling pkg-config v0.3.18 [INFO] [stderr] Compiling syn v1.0.38 [INFO] [stderr] Compiling ndarray v0.13.1 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Checking smallvec v1.4.1 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Checking ppv-lite86 v0.2.8 [INFO] [stderr] Checking scopeguard v1.1.0 [INFO] [stderr] Checking ascii v1.0.0 [INFO] [stderr] Compiling hdf5 v0.7.1 (/opt/rustwide/workdir) [INFO] [stderr] Checking remove_dir_all v0.5.3 [INFO] [stderr] Compiling paste v1.0.4 [INFO] [stderr] Compiling thread_local v1.0.1 [INFO] [stderr] Checking instant v0.1.9 [INFO] [stderr] Checking lock_api v0.4.2 [INFO] [stderr] Checking matrixmultiply v0.2.3 [INFO] [stderr] Compiling num-traits v0.2.12 [INFO] [stderr] Compiling num-integer v0.1.43 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling aho-corasick v0.7.13 [INFO] [stderr] Compiling quote v1.0.7 [INFO] [stderr] Checking parking_lot_core v0.8.2 [INFO] [stderr] Checking hdf5-types v0.7.1 [INFO] [stderr] Checking rand_core v0.6.1 [INFO] [stderr] Checking parking_lot v0.11.1 [INFO] [stderr] Checking rand_chacha v0.3.0 [INFO] [stderr] Checking rand v0.8.3 [INFO] [stderr] Checking regex v1.3.9 [INFO] [stderr] Checking tempfile v3.2.0 [INFO] [stderr] Compiling hdf5-sys v0.7.1 [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.7.1` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-1fbaa1ebdbaf3492/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_NO_PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.1/build.rs:549:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55eb6488f90c - std::backtrace_rs::backtrace::libunwind::trace::h2ab374bc2a3b7023 [INFO] [stderr] at /rustc/db1fb85cff63ad5fffe435e17128f99f9e1d970c/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stderr] 1: 0x55eb6488f90c - std::backtrace_rs::backtrace::trace_unsynchronized::h128cb5178b04dc46 [INFO] [stderr] at /rustc/db1fb85cff63ad5fffe435e17128f99f9e1d970c/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x55eb6488f90c - std::sys_common::backtrace::_print_fmt::h5344f9eefca2041f [INFO] [stderr] at /rustc/db1fb85cff63ad5fffe435e17128f99f9e1d970c/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x55eb6488f90c - ::fmt::h213003bc5c7acf04 [INFO] [stderr] at /rustc/db1fb85cff63ad5fffe435e17128f99f9e1d970c/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x55eb648aecbc - core::fmt::write::h78bf85fc3e93663f [INFO] [stderr] at /rustc/db1fb85cff63ad5fffe435e17128f99f9e1d970c/library/core/src/fmt/mod.rs:1126:17 [INFO] [stderr] 5: 0x55eb6488ca85 - std::io::Write::write_fmt::he619515c888f21a5 [INFO] [stderr] at /rustc/db1fb85cff63ad5fffe435e17128f99f9e1d970c/library/std/src/io/mod.rs:1667:15 [INFO] [stderr] 6: 0x55eb64891370 - std::sys_common::backtrace::_print::hf706674f77848203 [INFO] [stderr] at /rustc/db1fb85cff63ad5fffe435e17128f99f9e1d970c/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x55eb64891370 - std::sys_common::backtrace::print::hf0b6c7a88804ec56 [INFO] [stderr] at /rustc/db1fb85cff63ad5fffe435e17128f99f9e1d970c/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x55eb64891370 - std::panicking::default_hook::{{closure}}::h2dde766cd83a333a [INFO] [stderr] at /rustc/db1fb85cff63ad5fffe435e17128f99f9e1d970c/library/std/src/panicking.rs:210:50 [INFO] [stderr] 9: 0x55eb64890f27 - std::panicking::default_hook::h501e3b2e134eb149 [INFO] [stderr] at /rustc/db1fb85cff63ad5fffe435e17128f99f9e1d970c/library/std/src/panicking.rs:227:9 [INFO] [stderr] 10: 0x55eb64891a24 - std::panicking::rust_panic_with_hook::hc09e869c4cf00885 [INFO] [stderr] at /rustc/db1fb85cff63ad5fffe435e17128f99f9e1d970c/library/std/src/panicking.rs:624:17 [INFO] [stderr] 11: 0x55eb646b9db2 - std::panicking::begin_panic::{{closure}}::h63975556a34bfd77 [INFO] [stderr] at /rustc/db1fb85cff63ad5fffe435e17128f99f9e1d970c/library/std/src/panicking.rs:544:9 [INFO] [stderr] 12: 0x55eb646b9a59 - std::sys_common::backtrace::__rust_end_short_backtrace::h7527bd64b97c70cc [INFO] [stderr] at /rustc/db1fb85cff63ad5fffe435e17128f99f9e1d970c/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x55eb646b9cf3 - std::panicking::begin_panic::h7fae9c53a85e2fbd [INFO] [stderr] at /rustc/db1fb85cff63ad5fffe435e17128f99f9e1d970c/library/std/src/panicking.rs:543:12 [INFO] [stderr] 14: 0x55eb6468aba7 - build_script_build::LibrarySearcher::try_locate_hdf5_library::h7b83347d73d3479c [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.1/build.rs:549:13 [INFO] [stderr] 15: 0x55eb6468c467 - build_script_build::main::hf168214a2a3a8503 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.1/build.rs:647:9 [INFO] [stderr] 16: 0x55eb6468fd7b - core::ops::function::FnOnce::call_once::hee8a23c90bbd3a0e [INFO] [stderr] at /rustc/db1fb85cff63ad5fffe435e17128f99f9e1d970c/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 17: 0x55eb64695e6e - std::sys_common::backtrace::__rust_begin_short_backtrace::ha68b625b5fa5e724 [INFO] [stderr] at /rustc/db1fb85cff63ad5fffe435e17128f99f9e1d970c/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 18: 0x55eb646918f1 - std::rt::lang_start::{{closure}}::h0221f4d78c931d74 [INFO] [stderr] at /rustc/db1fb85cff63ad5fffe435e17128f99f9e1d970c/library/std/src/rt.rs:64:18 [INFO] [stderr] 19: 0x55eb64891f2a - core::ops::function::impls:: for &F>::call_once::hab43eb8ec758341e [INFO] [stderr] at /rustc/db1fb85cff63ad5fffe435e17128f99f9e1d970c/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 20: 0x55eb64891f2a - std::panicking::try::do_call::hb667fefd650e964d [INFO] [stderr] at /rustc/db1fb85cff63ad5fffe435e17128f99f9e1d970c/library/std/src/panicking.rs:403:40 [INFO] [stderr] 21: 0x55eb64891f2a - std::panicking::try::hc279775c9409768d [INFO] [stderr] at /rustc/db1fb85cff63ad5fffe435e17128f99f9e1d970c/library/std/src/panicking.rs:367:19 [INFO] [stderr] 22: 0x55eb64891f2a - std::panic::catch_unwind::hbe8b6ecc84f73073 [INFO] [stderr] at /rustc/db1fb85cff63ad5fffe435e17128f99f9e1d970c/library/std/src/panic.rs:133:14 [INFO] [stderr] 23: 0x55eb64891f2a - std::rt::lang_start_internal::{{closure}}::hb04fdaef496a162b [INFO] [stderr] at /rustc/db1fb85cff63ad5fffe435e17128f99f9e1d970c/library/std/src/rt.rs:46:48 [INFO] [stderr] 24: 0x55eb64891f2a - std::panicking::try::do_call::habca359de051411d [INFO] [stderr] at /rustc/db1fb85cff63ad5fffe435e17128f99f9e1d970c/library/std/src/panicking.rs:403:40 [INFO] [stderr] 25: 0x55eb64891f2a - std::panicking::try::h24c556a6948e0937 [INFO] [stderr] at /rustc/db1fb85cff63ad5fffe435e17128f99f9e1d970c/library/std/src/panicking.rs:367:19 [INFO] [stderr] 26: 0x55eb64891f2a - std::panic::catch_unwind::h58075d47f5a308d8 [INFO] [stderr] at /rustc/db1fb85cff63ad5fffe435e17128f99f9e1d970c/library/std/src/panic.rs:133:14 [INFO] [stderr] 27: 0x55eb64891f2a - std::rt::lang_start_internal::h3d20dc1537d76758 [INFO] [stderr] at /rustc/db1fb85cff63ad5fffe435e17128f99f9e1d970c/library/std/src/rt.rs:46:20 [INFO] [stderr] 28: 0x55eb646918c0 - std::rt::lang_start::h2a52e7b0fc1cdac4 [INFO] [stderr] at /rustc/db1fb85cff63ad5fffe435e17128f99f9e1d970c/library/std/src/rt.rs:63:17 [INFO] [stderr] 29: 0x55eb6468d97c - main [INFO] [stderr] 30: 0x7f70de2140b3 - __libc_start_main [INFO] [stderr] 31: 0x55eb64685e8e - _start [INFO] [stderr] 32: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "e925af1fef9a802f4ef45b9f38cae71b256cdc22c053bc2af0184c5adf72376d", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "e925af1fef9a802f4ef45b9f38cae71b256cdc22c053bc2af0184c5adf72376d", kill_on_drop: false }` [INFO] [stdout] e925af1fef9a802f4ef45b9f38cae71b256cdc22c053bc2af0184c5adf72376d