[INFO] fetching crate coverm 0.6.1... [INFO] checking coverm-0.6.1 against try#39e1293fce4b650061e85dda88aa428f726a8444 for pr-88041 [INFO] extracting crate coverm 0.6.1 into /workspace/builds/worker-93/source [INFO] validating manifest of crates.io crate coverm 0.6.1 on toolchain 39e1293fce4b650061e85dda88aa428f726a8444 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+39e1293fce4b650061e85dda88aa428f726a8444" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate coverm 0.6.1 [INFO] finished tweaking crates.io crate coverm 0.6.1 [INFO] tweaked toml for crates.io crate coverm 0.6.1 written to /workspace/builds/worker-93/source/Cargo.toml [INFO] crate crates.io crate coverm 0.6.1 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+39e1293fce4b650061e85dda88aa428f726a8444" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded rust-htslib v0.36.0 [INFO] [stderr] Downloaded bio v0.32.0 [INFO] [stderr] Downloaded murmurhash3 v0.0.5 [INFO] [stderr] Downloaded partitions v0.2.4 [INFO] [stderr] Downloaded checkm v0.1.0 [INFO] [stderr] Downloaded newtype_derive v0.1.4 [INFO] [stderr] Downloaded bird_tool_utils v0.3.0 [INFO] [stderr] Downloaded capnp v0.9.5 [INFO] [stderr] Downloaded finch v0.3.0 [INFO] [stderr] Downloaded needletail v0.3.2 [INFO] [stderr] Downloaded galah v0.3.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-93/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-93/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+39e1293fce4b650061e85dda88aa428f726a8444" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 6cf01cf92394d25f2098e754e7fc446124495a9f26f660f7a9e503349ef89517 [INFO] running `Command { std: "docker" "start" "-a" "6cf01cf92394d25f2098e754e7fc446124495a9f26f660f7a9e503349ef89517", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "6cf01cf92394d25f2098e754e7fc446124495a9f26f660f7a9e503349ef89517", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "6cf01cf92394d25f2098e754e7fc446124495a9f26f660f7a9e503349ef89517", kill_on_drop: false }` [INFO] [stdout] 6cf01cf92394d25f2098e754e7fc446124495a9f26f660f7a9e503349ef89517 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-93/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-93/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+39e1293fce4b650061e85dda88aa428f726a8444" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 4832208c418fcc766589e7f1d8cda711d554cea51051c075b0fb30043acb9957 [INFO] running `Command { std: "docker" "start" "-a" "4832208c418fcc766589e7f1d8cda711d554cea51051c075b0fb30043acb9957", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling libc v0.2.86 [INFO] [stderr] Compiling autocfg v1.0.1 [INFO] [stderr] Compiling proc-macro2 v1.0.24 [INFO] [stderr] Compiling unicode-xid v0.2.1 [INFO] [stderr] Compiling syn v1.0.60 [INFO] [stderr] Compiling memchr v2.3.4 [INFO] [stderr] Checking lazy_static v1.4.0 [INFO] [stderr] Compiling serde_derive v1.0.123 [INFO] [stderr] Compiling serde v1.0.123 [INFO] [stderr] Compiling byteorder v1.3.4 [INFO] [stderr] Checking once_cell v1.7.0 [INFO] [stderr] Checking regex-syntax v0.6.22 [INFO] [stderr] Compiling ryu v1.0.5 [INFO] [stderr] Checking adler v0.2.3 [INFO] [stderr] Checking quick-error v1.2.3 [INFO] [stderr] Compiling getrandom v0.2.2 [INFO] [stderr] Compiling rayon-core v1.9.0 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Checking scopeguard v1.1.0 [INFO] [stderr] Compiling crc32fast v1.2.1 [INFO] [stderr] Checking gimli v0.23.0 [INFO] [stderr] Compiling unicode-segmentation v1.7.1 [INFO] [stderr] Checking safemem v0.3.3 [INFO] [stderr] Compiling matrixmultiply v0.1.15 [INFO] [stderr] Compiling serde_json v1.0.62 [INFO] [stderr] Checking object v0.23.0 [INFO] [stderr] Checking rustc-demangle v0.1.18 [INFO] [stderr] Checking unicode-width v0.1.8 [INFO] [stderr] Checking ansi_term v0.11.0 [INFO] [stderr] Checking rawpointer v0.1.0 [INFO] [stderr] Compiling ndarray v0.12.1 [INFO] [stderr] Compiling doc-comment v0.3.3 [INFO] [stderr] Checking remove_dir_all v0.5.3 [INFO] [stderr] Checking strsim v0.8.0 [INFO] [stderr] Compiling glob v0.3.0 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Compiling ndarray v0.13.1 [INFO] [stderr] Checking roff v0.1.0 [INFO] [stderr] Checking bytecount v0.6.2 [INFO] [stderr] Checking hashbrown v0.9.1 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Checking murmurhash3 v0.0.5 [INFO] [stderr] Checking bit-vec v0.5.1 [INFO] [stderr] Checking humantime v2.1.0 [INFO] [stderr] Compiling bio v0.32.0 [INFO] [stderr] Checking version-compare v0.0.10 [INFO] [stderr] Checking newtype_derive v0.1.4 [INFO] [stderr] Checking array-macro v1.0.5 [INFO] [stderr] Checking fixedbitset v0.2.0 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Checking strum v0.18.0 [INFO] [stderr] Checking triple_accel v0.3.4 [INFO] [stderr] Checking fnv v1.0.7 [INFO] [stderr] Checking ansi_term v0.12.1 [INFO] [stderr] Checking ieee754 v0.2.6 [INFO] [stderr] Checking linear-map v1.2.0 [INFO] [stderr] Checking version-compare v0.0.11 [INFO] [stderr] Compiling cargo-husky v1.5.0 [INFO] [stderr] Checking environment v0.1.1 [INFO] [stderr] Checking difference v2.0.0 [INFO] [stderr] Checking tinyvec v1.1.1 [INFO] [stderr] Checking itertools v0.7.11 [INFO] [stderr] Checking form_urlencoded v1.0.1 [INFO] [stderr] Checking itertools v0.9.0 [INFO] [stderr] Compiling derefable v0.1.0 [INFO] [stderr] Checking thread_local v1.1.3 [INFO] [stderr] Checking matrixmultiply v0.2.4 [INFO] [stderr] Checking humantime v1.3.0 [INFO] [stderr] Checking textwrap v0.11.0 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Compiling heck v0.3.2 [INFO] [stderr] Checking bird_tool_utils-man v0.4.0 [INFO] [stderr] Compiling fs-utils v1.1.4 [INFO] [stderr] Checking unicode-normalization v0.1.17 [INFO] [stderr] Compiling num-traits v0.2.14 [INFO] [stderr] Compiling miniz_oxide v0.4.3 [INFO] [stderr] Compiling crossbeam-utils v0.8.2 [INFO] [stderr] Compiling memoffset v0.6.1 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling rayon v1.5.0 [INFO] [stderr] Compiling num-integer v0.1.44 [INFO] [stderr] Compiling indexmap v1.6.1 [INFO] [stderr] Checking regex-automata v0.1.9 [INFO] [stderr] Checking capnp v0.9.5 [INFO] [stderr] Checking fxhash v0.2.1 [INFO] [stderr] Checking aho-corasick v0.7.15 [INFO] [stderr] Checking csv-core v0.1.10 [INFO] [stderr] Checking buf_redux v0.8.4 [INFO] [stderr] Compiling quote v1.0.9 [INFO] [stderr] Checking petgraph v0.5.1 [INFO] [stderr] Checking idna v0.2.2 [INFO] [stderr] Checking regex v1.4.3 [INFO] [stderr] Checking crossbeam-epoch v0.9.2 [INFO] [stderr] Checking crossbeam-channel v0.5.0 [INFO] [stderr] Checking itertools-num v0.1.3 [INFO] [stderr] Checking approx v0.3.2 [INFO] [stderr] Checking ordered-float v1.1.1 [INFO] [stderr] Checking crossbeam-deque v0.8.0 [INFO] [stderr] Checking atty v0.2.14 [INFO] [stderr] Checking getrandom v0.1.16 [INFO] [stderr] Checking num_cpus v1.13.0 [INFO] [stderr] Checking flate2 v1.0.20 [INFO] [stderr] Checking memmap v0.7.0 [INFO] [stderr] Checking rand v0.4.6 [INFO] [stderr] Checking nix v0.20.0 [INFO] [stderr] Compiling jobserver v0.1.21 [INFO] [stderr] Checking url v2.2.1 [INFO] [stderr] Checking colored v1.9.3 [INFO] [stderr] Checking rand_core v0.6.2 [INFO] [stderr] Checking rand_core v0.5.1 [INFO] [stderr] Compiling cc v1.0.67 [INFO] [stderr] Checking rand_chacha v0.3.0 [INFO] [stderr] Checking rand_chacha v0.2.2 [INFO] [stderr] Checking env_logger v0.7.1 [INFO] [stderr] Checking env_logger v0.8.3 [INFO] [stderr] Checking rand v0.7.3 [INFO] [stderr] Checking rand v0.8.3 [INFO] [stderr] Checking addr2line v0.14.1 [INFO] [stderr] Checking tempdir v0.3.7 [INFO] [stderr] Checking backtrace v0.3.56 [INFO] [stderr] Checking tempfile v3.2.0 [INFO] [stderr] Compiling lzma-sys v0.1.17 [INFO] [stderr] Compiling bzip2-sys v0.1.10+1.0.8 [INFO] [stderr] Compiling libz-sys v1.1.2 [INFO] [stderr] Compiling hts-sys v1.11.1-fix1 [INFO] [stderr] Checking statrs v0.12.0 [INFO] [stderr] Checking xz2 v0.1.6 [INFO] [stderr] Checking bzip2 v0.3.3 [INFO] [stderr] Checking needletail v0.3.2 [INFO] [stderr] Checking needletail v0.4.0 [INFO] [stderr] Checking partitions v0.2.4 [INFO] [stderr] Compiling synstructure v0.12.4 [INFO] [stderr] Compiling failure_derive v0.1.8 [INFO] [stderr] Compiling derive-new v0.5.9 [INFO] [stderr] Compiling strum_macros v0.20.1 [INFO] [stderr] Compiling enum-map-derive v0.4.6 [INFO] [stderr] Compiling thiserror-impl v1.0.24 [INFO] [stderr] Compiling snafu-derive v0.6.10 [INFO] [stderr] Compiling strum_macros v0.18.0 [INFO] [stderr] Compiling getset v0.0.9 [INFO] [stderr] Checking enum-map v0.6.4 [INFO] [stderr] Checking failure v0.1.8 [INFO] [stderr] Checking thiserror v1.0.24 [INFO] [stderr] Checking bio-types v0.10.0 [INFO] [stderr] Checking snafu v0.6.10 [INFO] [stderr] Checking rust-htslib v0.36.0 [INFO] [stderr] Checking vec_map v0.8.2 [INFO] [stderr] Checking bstr v0.2.15 [INFO] [stderr] Checking bincode v1.3.2 [INFO] [stderr] Checking multimap v0.8.2 [INFO] [stderr] Checking clap v2.33.3 [INFO] [stderr] Checking csv v1.1.5 [INFO] [stderr] Checking assert_cli v0.6.3 [INFO] [stderr] Checking checkm v0.1.0 [INFO] [stderr] Checking bird_tool_utils v0.3.0 [INFO] [stderr] Checking finch v0.3.0 [INFO] [stderr] Checking galah v0.3.0 [INFO] [stderr] Checking coverm v0.6.1 (/opt/rustwide/workdir) [INFO] [stdout] warning: multiple lines skipped by escaped newline [INFO] [stdout] --> src/cli.rs:248:100 [INFO] [stdout] | [INFO] [stdout] 248 | To fix, set the {} environment variable e.g. to set it to use the current directory: {}\n\n\ [INFO] [stdout] | ____________________________________________________________________________________________________^ [INFO] [stdout] 249 | | [INFO] [stdout] 250 | | {} Either is fine, CoverM determines which is being used by virtue of being less than \ [INFO] [stdout] | |________^ skipping everything up to and including this point [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: multiple lines skipped by escaped newline [INFO] [stdout] --> src/cli.rs:248:100 [INFO] [stdout] | [INFO] [stdout] 248 | To fix, set the {} environment variable e.g. to set it to use the current directory: {}\n\n\ [INFO] [stdout] | ____________________________________________________________________________________________________^ [INFO] [stdout] 249 | | [INFO] [stdout] 250 | | {} Either is fine, CoverM determines which is being used by virtue of being less than \ [INFO] [stdout] | |________^ skipping everything up to and including this point [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: panic message is not a string literal [INFO] [stdout] --> src/mapping_parameters.rs:159:16 [INFO] [stdout] | [INFO] [stdout] 159 | panic!(format!( [INFO] [stdout] | ________________^ [INFO] [stdout] 160 | | "The reference specified '{}' does not appear to exist", [INFO] [stdout] 161 | | &reference_path [INFO] [stdout] 162 | | )); [INFO] [stdout] | |_________^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_fmt_panics)]` on by default [INFO] [stdout] = note: this usage of panic!() is deprecated; it will be a hard error in Rust 2021 [INFO] [stdout] = note: for more information, see [INFO] [stdout] = note: the panic!() macro supports formatting, so there's no need for the format!() macro here [INFO] [stdout] help: remove the `format!(..)` macro call [INFO] [stdout] | [INFO] [stdout] 159 ~ panic!( [INFO] [stdout] 160 | "The reference specified '{}' does not appear to exist", [INFO] [stdout] 161 | &reference_path [INFO] [stdout] 162 ~ ); [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: panic message is not a string literal [INFO] [stdout] --> src/mapping_parameters.rs:164:16 [INFO] [stdout] | [INFO] [stdout] 164 | panic!(format!( [INFO] [stdout] | ________________^ [INFO] [stdout] 165 | | "The reference specified '{}' should be a file, not e.g. a directory", [INFO] [stdout] 166 | | &reference_path [INFO] [stdout] 167 | | )); [INFO] [stdout] | |_________^ [INFO] [stdout] | [INFO] [stdout] = note: this usage of panic!() is deprecated; it will be a hard error in Rust 2021 [INFO] [stdout] = note: for more information, see [INFO] [stdout] = note: the panic!() macro supports formatting, so there's no need for the format!() macro here [INFO] [stdout] help: remove the `format!(..)` macro call [INFO] [stdout] | [INFO] [stdout] 164 ~ panic!( [INFO] [stdout] 165 | "The reference specified '{}' should be a file, not e.g. a directory", [INFO] [stdout] 166 | &reference_path [INFO] [stdout] 167 ~ ); [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 3 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: panic message is not a string literal [INFO] [stdout] --> src/mapping_parameters.rs:159:16 [INFO] [stdout] | [INFO] [stdout] 159 | panic!(format!( [INFO] [stdout] | ________________^ [INFO] [stdout] 160 | | "The reference specified '{}' does not appear to exist", [INFO] [stdout] 161 | | &reference_path [INFO] [stdout] 162 | | )); [INFO] [stdout] | |_________^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_fmt_panics)]` on by default [INFO] [stdout] = note: this usage of panic!() is deprecated; it will be a hard error in Rust 2021 [INFO] [stdout] = note: for more information, see [INFO] [stdout] = note: the panic!() macro supports formatting, so there's no need for the format!() macro here [INFO] [stdout] help: remove the `format!(..)` macro call [INFO] [stdout] | [INFO] [stdout] 159 ~ panic!( [INFO] [stdout] 160 | "The reference specified '{}' does not appear to exist", [INFO] [stdout] 161 | &reference_path [INFO] [stdout] 162 ~ ); [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: panic message is not a string literal [INFO] [stdout] --> src/mapping_parameters.rs:164:16 [INFO] [stdout] | [INFO] [stdout] 164 | panic!(format!( [INFO] [stdout] | ________________^ [INFO] [stdout] 165 | | "The reference specified '{}' should be a file, not e.g. a directory", [INFO] [stdout] 166 | | &reference_path [INFO] [stdout] 167 | | )); [INFO] [stdout] | |_________^ [INFO] [stdout] | [INFO] [stdout] = note: this usage of panic!() is deprecated; it will be a hard error in Rust 2021 [INFO] [stdout] = note: for more information, see [INFO] [stdout] = note: the panic!() macro supports formatting, so there's no need for the format!() macro here [INFO] [stdout] help: remove the `format!(..)` macro call [INFO] [stdout] | [INFO] [stdout] 164 ~ panic!( [INFO] [stdout] 165 | "The reference specified '{}' should be a file, not e.g. a directory", [INFO] [stdout] 166 | &reference_path [INFO] [stdout] 167 ~ ); [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 3 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 39.03s [INFO] running `Command { std: "docker" "inspect" "4832208c418fcc766589e7f1d8cda711d554cea51051c075b0fb30043acb9957", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "4832208c418fcc766589e7f1d8cda711d554cea51051c075b0fb30043acb9957", kill_on_drop: false }` [INFO] [stdout] 4832208c418fcc766589e7f1d8cda711d554cea51051c075b0fb30043acb9957