[INFO] fetching crate openmm-sys 7.4.1... [INFO] checking openmm-sys-7.4.1 against master#8007b506ac5da629f223b755f5a5391edd5f6d01 for pr-88041 [INFO] extracting crate openmm-sys 7.4.1 into /workspace/builds/worker-13/source [INFO] validating manifest of crates.io crate openmm-sys 7.4.1 on toolchain 8007b506ac5da629f223b755f5a5391edd5f6d01 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+8007b506ac5da629f223b755f5a5391edd5f6d01" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate openmm-sys 7.4.1 [INFO] finished tweaking crates.io crate openmm-sys 7.4.1 [INFO] tweaked toml for crates.io crate openmm-sys 7.4.1 written to /workspace/builds/worker-13/source/Cargo.toml [INFO] crate crates.io crate openmm-sys 7.4.1 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+8007b506ac5da629f223b755f5a5391edd5f6d01" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+8007b506ac5da629f223b755f5a5391edd5f6d01" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 2abf02fe71c45d2e1cade4b149189f5ece6bb1a41fe93cd0478080172a62c217 [INFO] running `Command { std: "docker" "start" "-a" "2abf02fe71c45d2e1cade4b149189f5ece6bb1a41fe93cd0478080172a62c217", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "2abf02fe71c45d2e1cade4b149189f5ece6bb1a41fe93cd0478080172a62c217", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "2abf02fe71c45d2e1cade4b149189f5ece6bb1a41fe93cd0478080172a62c217", kill_on_drop: false }` [INFO] [stdout] 2abf02fe71c45d2e1cade4b149189f5ece6bb1a41fe93cd0478080172a62c217 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+8007b506ac5da629f223b755f5a5391edd5f6d01" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 946d1073e3536951fcf3ad9ef9bd2952ef872eac9fb2b517da08e150e9182d32 [INFO] running `Command { std: "docker" "start" "-a" "946d1073e3536951fcf3ad9ef9bd2952ef872eac9fb2b517da08e150e9182d32", kill_on_drop: false }` [INFO] [stderr] Compiling cc v1.0.59 [INFO] [stderr] Compiling cmake v0.1.44 [INFO] [stderr] Compiling openmm-sys v7.4.1 (/opt/rustwide/workdir) [INFO] [stderr] The following warnings were emitted during compilation: [INFO] [stderr] [INFO] [stderr] warning: [OpenMM-sys] Dynamically linking against the OpenMM library. [INFO] [stderr] [INFO] [stderr] error: failed to run custom build command for `openmm-sys v7.4.1 (/opt/rustwide/workdir)` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/openmm-sys-69488f43d73918b3/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] cargo:warning=[OpenMM-sys] Dynamically linking against the OpenMM library. [INFO] [stderr] running: "cmake" "/opt/rustwide/workdir/openmm" "-DOPENMM_BUILD_PYTHON_WRAPPERS=OFF" "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/openmm-sys-126d6339889ff49e/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_ASM_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_ASM_COMPILER=/usr/bin/cc" "-DCMAKE_BUILD_TYPE=Release" [INFO] [stderr] -- Found PythonInterp: /usr/bin/python (found version "2.7.18") [INFO] [stderr] -- The C compiler identification is GNU 9.3.0 [INFO] [stderr] -- The CXX compiler identification is GNU 9.3.0 [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc -- works [INFO] [stderr] -- Detecting C compiler ABI info [INFO] [stderr] -- Detecting C compiler ABI info - done [INFO] [stderr] -- Detecting C compile features [INFO] [stderr] -- Detecting C compile features - done [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ -- works [INFO] [stderr] -- Detecting CXX compiler ABI info [INFO] [stderr] -- Detecting CXX compiler ABI info - done [INFO] [stderr] -- Detecting CXX compile features [INFO] [stderr] -- Detecting CXX compile features - done [INFO] [stderr] -- Configuring incomplete, errors occurred! [INFO] [stderr] See also "/opt/rustwide/target/debug/build/openmm-sys-126d6339889ff49e/out/build/CMakeFiles/CMakeOutput.log". [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] fatal: not a git repository (or any parent up to mount point /opt/rustwide) [INFO] [stderr] Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). [INFO] [stderr] CMake Deprecation Warning at CMakeLists.txt:25 (CMAKE_POLICY): [INFO] [stderr] The OLD behavior for policy CMP0042 will be removed from a future version [INFO] [stderr] of CMake. [INFO] [stderr] [INFO] [stderr] The cmake-policies(7) manual explains that the OLD behaviors of all [INFO] [stderr] policies are deprecated and that a policy should be set to OLD only under [INFO] [stderr] specific short-term circumstances. Projects should be ported to the NEW [INFO] [stderr] behavior and not rely on setting a policy to OLD. [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Error at /usr/share/cmake-3.16/Modules/FindPackageHandleStandardArgs.cmake:146 (message): [INFO] [stderr] Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) [INFO] [stderr] Call Stack (most recent call first): [INFO] [stderr] /usr/share/cmake-3.16/Modules/FindPackageHandleStandardArgs.cmake:393 (_FPHSA_FAILURE_MESSAGE) [INFO] [stderr] /usr/share/cmake-3.16/Modules/FindDoxygen.cmake:633 (find_package_handle_standard_args) [INFO] [stderr] wrappers/CMakeLists.txt:1 (find_package) [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] thread 'main' panicked at ' [INFO] [stderr] command did not execute successfully, got: exit status: 1 [INFO] [stderr] [INFO] [stderr] build script failed, must exit now', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.44/src/lib.rs:885:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x56548263da80 - std::backtrace_rs::backtrace::libunwind::trace::h0197874f43e7190f [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stderr] 1: 0x56548263da80 - std::backtrace_rs::backtrace::trace_unsynchronized::hfdfd566bbbda6f2d [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x56548263da80 - std::sys_common::backtrace::_print_fmt::hb3b4707c15b032a1 [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x56548263da80 - ::fmt::had1dceac8b072f88 [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x56548265dcfc - core::fmt::write::h9a6d9c74526a6c1b [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/core/src/fmt/mod.rs:1117:17 [INFO] [stderr] 5: 0x56548263a9a5 - std::io::Write::write_fmt::h05c3bb2bc83b8ed0 [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/io/mod.rs:1667:15 [INFO] [stderr] 6: 0x56548263f9cb - std::sys_common::backtrace::_print::h10f0826b2a586b58 [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x56548263f9cb - std::sys_common::backtrace::print::h0d4242fbd1ac3eb6 [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x56548263f9cb - std::panicking::default_hook::{{closure}}::h275ead39fe8b8e2a [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/panicking.rs:210:50 [INFO] [stderr] 9: 0x56548263f540 - std::panicking::default_hook::h5505d4d90f5984d9 [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/panicking.rs:227:9 [INFO] [stderr] 10: 0x565482640094 - std::panicking::rust_panic_with_hook::h2f8980d1d9fd4ca0 [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/panicking.rs:624:17 [INFO] [stderr] 11: 0x56548263fb70 - std::panicking::begin_panic_handler::{{closure}}::hd87853ef7e40ae97 [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/panicking.rs:521:13 [INFO] [stderr] 12: 0x56548263df84 - std::sys_common::backtrace::__rust_end_short_backtrace::hcab167aa940694a2 [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x56548263fad9 - rust_begin_unwind [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/panicking.rs:517:5 [INFO] [stderr] 14: 0x5654825cebfb - std::panicking::begin_panic_fmt::hb22a56f1d7ee4f34 [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/panicking.rs:460:5 [INFO] [stderr] 15: 0x5654825dd45c - cmake::fail::h64f3d4527b1b7e2a [INFO] [stderr] 16: 0x5654825dceaa - cmake::run::hce6e453b3b0d6601 [INFO] [stderr] 17: 0x5654825d9365 - cmake::Config::build::hf9508057b6f1d6ea [INFO] [stderr] 18: 0x5654825d2789 - build_script_build::main::h7272524aef602cff [INFO] [stderr] 19: 0x5654825d3b83 - core::ops::function::FnOnce::call_once::h83e169dd8e4365a6 [INFO] [stderr] 20: 0x5654825d42b9 - std::sys_common::backtrace::__rust_begin_short_backtrace::hf3f49624413599f0 [INFO] [stderr] 21: 0x5654825d4039 - std::rt::lang_start::{{closure}}::h7e0df302f48a4bdb [INFO] [stderr] 22: 0x56548264059a - core::ops::function::impls:: for &F>::call_once::h5e3bbb97afe2bb03 [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 23: 0x56548264059a - std::panicking::try::do_call::h48c2d717cec4bdcb [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/panicking.rs:403:40 [INFO] [stderr] 24: 0x56548264059a - std::panicking::try::h2a49bc215893bc14 [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/panicking.rs:367:19 [INFO] [stderr] 25: 0x56548264059a - std::panic::catch_unwind::h6d23b7c99550c7ff [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/panic.rs:129:14 [INFO] [stderr] 26: 0x56548264059a - std::rt::lang_start_internal::{{closure}}::h251a0c0729f15896 [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/rt.rs:45:48 [INFO] [stderr] 27: 0x56548264059a - std::panicking::try::do_call::h4830e784a9b9d1ad [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/panicking.rs:403:40 [INFO] [stderr] 28: 0x56548264059a - std::panicking::try::h0427859d2ad3b3b9 [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/panicking.rs:367:19 [INFO] [stderr] 29: 0x56548264059a - std::panic::catch_unwind::h4079bfb63395be0f [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/panic.rs:129:14 [INFO] [stderr] 30: 0x56548264059a - std::rt::lang_start_internal::h408e9d26a25a1f08 [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/rt.rs:45:20 [INFO] [stderr] 31: 0x5654825d4011 - std::rt::lang_start::hdad23f200bb05ece [INFO] [stderr] 32: 0x5654825d3333 - main [INFO] [stderr] 33: 0x7fd7bc7220b3 - __libc_start_main [INFO] [stderr] 34: 0x5654825cfaee - _start [INFO] [stderr] 35: 0x0 - [INFO] running `Command { std: "docker" "inspect" "946d1073e3536951fcf3ad9ef9bd2952ef872eac9fb2b517da08e150e9182d32", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "946d1073e3536951fcf3ad9ef9bd2952ef872eac9fb2b517da08e150e9182d32", kill_on_drop: false }` [INFO] [stdout] 946d1073e3536951fcf3ad9ef9bd2952ef872eac9fb2b517da08e150e9182d32