[INFO] fetching crate flann-sys 0.1.0... [INFO] checking flann-sys-0.1.0 against master#8007b506ac5da629f223b755f5a5391edd5f6d01 for pr-88041 [INFO] extracting crate flann-sys 0.1.0 into /workspace/builds/worker-91/source [INFO] validating manifest of crates.io crate flann-sys 0.1.0 on toolchain 8007b506ac5da629f223b755f5a5391edd5f6d01 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+8007b506ac5da629f223b755f5a5391edd5f6d01" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate flann-sys 0.1.0 [INFO] finished tweaking crates.io crate flann-sys 0.1.0 [INFO] tweaked toml for crates.io crate flann-sys 0.1.0 written to /workspace/builds/worker-91/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+8007b506ac5da629f223b755f5a5391edd5f6d01" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+8007b506ac5da629f223b755f5a5391edd5f6d01" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-91/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-91/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+8007b506ac5da629f223b755f5a5391edd5f6d01" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] b8964183ebddaa734e7ef30220866f7dcb75b4b5f9fac086fca2181e2662928b [INFO] running `Command { std: "docker" "start" "-a" "b8964183ebddaa734e7ef30220866f7dcb75b4b5f9fac086fca2181e2662928b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "b8964183ebddaa734e7ef30220866f7dcb75b4b5f9fac086fca2181e2662928b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "b8964183ebddaa734e7ef30220866f7dcb75b4b5f9fac086fca2181e2662928b", kill_on_drop: false }` [INFO] [stdout] b8964183ebddaa734e7ef30220866f7dcb75b4b5f9fac086fca2181e2662928b [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-91/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-91/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+8007b506ac5da629f223b755f5a5391edd5f6d01" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] d65d3a965dd723dce23cc521a9f66efba051fe56d82918d5067721cc9d0e9a08 [INFO] running `Command { std: "docker" "start" "-a" "d65d3a965dd723dce23cc521a9f66efba051fe56d82918d5067721cc9d0e9a08", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.99 [INFO] [stderr] Compiling memchr v2.4.0 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling log v0.4.14 [INFO] [stderr] Compiling glob v0.2.11 [INFO] [stderr] Compiling regex v0.2.11 [INFO] [stderr] Compiling libloading v0.4.3 [INFO] [stderr] Compiling cfg-if v1.0.0 [INFO] [stderr] Compiling ucd-util v0.1.8 [INFO] [stderr] Compiling unicode-width v0.1.8 [INFO] [stderr] Compiling utf8-ranges v1.0.4 [INFO] [stderr] Compiling unicode-xid v0.1.0 [INFO] [stderr] Compiling bindgen v0.32.3 [INFO] [stderr] Compiling bitflags v1.3.1 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling strsim v0.8.0 [INFO] [stderr] Compiling ansi_term v0.11.0 [INFO] [stderr] Compiling peeking_take_while v0.1.2 [INFO] [stderr] Compiling cc v1.0.69 [INFO] [stderr] Compiling cfg-if v0.1.10 [INFO] [stderr] Compiling proc-macro2 v0.2.3 [INFO] [stderr] Compiling thread_local v0.3.6 [INFO] [stderr] Compiling regex-syntax v0.5.6 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling quote v0.4.2 [INFO] [stderr] Compiling clang-sys v0.21.2 [INFO] [stderr] Compiling cmake v0.1.45 [INFO] [stderr] Compiling log v0.3.9 [INFO] [stderr] Compiling memchr v1.0.2 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling which v1.0.5 [INFO] [stderr] Compiling clap v2.33.3 [INFO] [stderr] Compiling aho-corasick v0.6.10 [INFO] [stderr] Compiling nom v3.2.1 [INFO] [stderr] Compiling cexpr v0.2.3 [INFO] [stderr] Compiling env_logger v0.4.3 [INFO] [stderr] Compiling flann-sys v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] error: failed to run custom build command for `flann-sys v0.1.0 (/opt/rustwide/workdir)` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/flann-sys-2e263634415713cc/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] cargo:rustc-link-lib=gomp [INFO] [stderr] cargo:rustc-link-lib=stdc++ [INFO] [stderr] running: "cmake" "/opt/rustwide/workdir/flann" "-DBUILD_EXAMPLES=OFF" "-DBUILD_TESTS=OFF" "-DBUILD_DOC=OFF" "-DBUILD_PYTHON_BINDINGS=OFF" "-DBUILD_MATLAB_BINDINGS=OFF" "-DUSE_OPENMP=ON" "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/flann-sys-41baa721495a6080/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_ASM_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_ASM_COMPILER=/usr/bin/cc" "-DCMAKE_BUILD_TYPE=Debug" [INFO] [stderr] -- The C compiler identification is GNU 9.3.0 [INFO] [stderr] -- The CXX compiler identification is GNU 9.3.0 [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc -- works [INFO] [stderr] -- Detecting C compiler ABI info [INFO] [stderr] -- Detecting C compiler ABI info - done [INFO] [stderr] -- Detecting C compile features [INFO] [stderr] -- Detecting C compile features - done [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ -- works [INFO] [stderr] -- Detecting CXX compiler ABI info [INFO] [stderr] -- Detecting CXX compiler ABI info - done [INFO] [stderr] -- Detecting CXX compile features [INFO] [stderr] -- Detecting CXX compile features - done [INFO] [stderr] -- Found PythonInterp: /usr/bin/python (found version "2.7.18") [INFO] [stderr] -- Could NOT find HDF5 (missing: HDF5_LIBRARIES HDF5_INCLUDE_DIRS) (found version "") [INFO] [stderr] -- Could NOT find GTest (missing: GTEST_LIBRARY GTEST_INCLUDE_DIR GTEST_MAIN_LIBRARY) [INFO] [stderr] -- Found OpenMP_C: -fopenmp (found version "4.5") [INFO] [stderr] -- Found OpenMP_CXX: -fopenmp (found version "4.5") [INFO] [stderr] -- Found OpenMP: TRUE (found version "4.5") [INFO] [stderr] -- Install prefix: /opt/rustwide/target/debug/build/flann-sys-41baa721495a6080/out [INFO] [stderr] -- Build type: Debug [INFO] [stderr] -- Building C bindings: ON [INFO] [stderr] -- Building examples: OFF [INFO] [stderr] -- Building tests: OFF [INFO] [stderr] -- Building documentation: OFF [INFO] [stderr] -- Building python bindings: OFF [INFO] [stderr] -- Building matlab bindings: OFF [INFO] [stderr] -- Building CUDA library: OFF [INFO] [stderr] -- Using OpenMP support: ON [INFO] [stderr] -- Using MPI support: OFF [INFO] [stderr] -- Configuring incomplete, errors occurred! [INFO] [stderr] See also "/opt/rustwide/target/debug/build/flann-sys-41baa721495a6080/out/build/CMakeFiles/CMakeOutput.log". [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] CMake Warning at CMakeLists.txt:78 (message): [INFO] [stderr] hdf5 library not found, some tests will not be run [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Warning at CMakeLists.txt:117 (message): [INFO] [stderr] gtest library not found, some tests will not be run [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Error: Could not open file for write in copy operation /opt/rustwide/workdir/flann/src/cpp/flann/config.h.tmp [INFO] [stderr] CMake Error: : System Error: Read-only file system [INFO] [stderr] CMake Error at src/cpp/CMakeLists.txt:5 (configure_file): [INFO] [stderr] configure_file Problem configuring file [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] thread 'main' panicked at ' [INFO] [stderr] command did not execute successfully, got: exit status: 1 [INFO] [stderr] [INFO] [stderr] build script failed, must exit now', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.45/src/lib.rs:894:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55dd75e81bc0 - std::backtrace_rs::backtrace::libunwind::trace::h0197874f43e7190f [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stderr] 1: 0x55dd75e81bc0 - std::backtrace_rs::backtrace::trace_unsynchronized::hfdfd566bbbda6f2d [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x55dd75e81bc0 - std::sys_common::backtrace::_print_fmt::hb3b4707c15b032a1 [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x55dd75e81bc0 - ::fmt::had1dceac8b072f88 [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x55dd75ea77bc - core::fmt::write::h9a6d9c74526a6c1b [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/core/src/fmt/mod.rs:1117:17 [INFO] [stderr] 5: 0x55dd75e7e4a5 - std::io::Write::write_fmt::h05c3bb2bc83b8ed0 [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/io/mod.rs:1667:15 [INFO] [stderr] 6: 0x55dd75e83cfb - std::sys_common::backtrace::_print::h10f0826b2a586b58 [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x55dd75e83cfb - std::sys_common::backtrace::print::h0d4242fbd1ac3eb6 [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x55dd75e83cfb - std::panicking::default_hook::{{closure}}::h275ead39fe8b8e2a [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/panicking.rs:210:50 [INFO] [stderr] 9: 0x55dd75e83870 - std::panicking::default_hook::h5505d4d90f5984d9 [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/panicking.rs:227:9 [INFO] [stderr] 10: 0x55dd75e843c4 - std::panicking::rust_panic_with_hook::h2f8980d1d9fd4ca0 [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/panicking.rs:624:17 [INFO] [stderr] 11: 0x55dd75e83ea0 - std::panicking::begin_panic_handler::{{closure}}::hd87853ef7e40ae97 [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/panicking.rs:521:13 [INFO] [stderr] 12: 0x55dd75e820c4 - std::sys_common::backtrace::__rust_end_short_backtrace::hcab167aa940694a2 [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x55dd75e83e09 - rust_begin_unwind [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/panicking.rs:517:5 [INFO] [stderr] 14: 0x55dd759aab9b - std::panicking::begin_panic_fmt::hb22a56f1d7ee4f34 [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/panicking.rs:460:5 [INFO] [stderr] 15: 0x55dd759b62c3 - cmake::fail::h89d317d5a9b1271c [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.45/src/lib.rs:894:5 [INFO] [stderr] 16: 0x55dd759b5ce9 - cmake::run::h14a99abc9cf69157 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.45/src/lib.rs:872:9 [INFO] [stderr] 17: 0x55dd759b27ba - cmake::Config::build::hf4abd9f4caacea71 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.45/src/lib.rs:707:13 [INFO] [stderr] 18: 0x55dd759ad539 - build_script_build::main::hbc9ca1cacd7ea939 [INFO] [stderr] at /opt/rustwide/workdir/build.rs:30:19 [INFO] [stderr] 19: 0x55dd759ac7fb - core::ops::function::FnOnce::call_once::h495dab16902dc72a [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 20: 0x55dd759ace7e - std::sys_common::backtrace::__rust_begin_short_backtrace::h4ca0141dae29952a [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 21: 0x55dd759acd91 - std::rt::lang_start::{{closure}}::h2c793976a1f3acd5 [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/rt.rs:63:18 [INFO] [stderr] 22: 0x55dd75e848ca - core::ops::function::impls:: for &F>::call_once::h5e3bbb97afe2bb03 [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 23: 0x55dd75e848ca - std::panicking::try::do_call::h48c2d717cec4bdcb [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/panicking.rs:403:40 [INFO] [stderr] 24: 0x55dd75e848ca - std::panicking::try::h2a49bc215893bc14 [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/panicking.rs:367:19 [INFO] [stderr] 25: 0x55dd75e848ca - std::panic::catch_unwind::h6d23b7c99550c7ff [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/panic.rs:129:14 [INFO] [stderr] 26: 0x55dd75e848ca - std::rt::lang_start_internal::{{closure}}::h251a0c0729f15896 [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/rt.rs:45:48 [INFO] [stderr] 27: 0x55dd75e848ca - std::panicking::try::do_call::h4830e784a9b9d1ad [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/panicking.rs:403:40 [INFO] [stderr] 28: 0x55dd75e848ca - std::panicking::try::h0427859d2ad3b3b9 [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/panicking.rs:367:19 [INFO] [stderr] 29: 0x55dd75e848ca - std::panic::catch_unwind::h4079bfb63395be0f [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/panic.rs:129:14 [INFO] [stderr] 30: 0x55dd75e848ca - std::rt::lang_start_internal::h408e9d26a25a1f08 [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/rt.rs:45:20 [INFO] [stderr] 31: 0x55dd759acd60 - std::rt::lang_start::h717fc17bb4939a27 [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/rt.rs:62:5 [INFO] [stderr] 32: 0x55dd759ad9bc - main [INFO] [stderr] 33: 0x7facf82af0b3 - __libc_start_main [INFO] [stderr] 34: 0x55dd759ac0be - _start [INFO] [stderr] 35: 0x0 - [INFO] running `Command { std: "docker" "inspect" "d65d3a965dd723dce23cc521a9f66efba051fe56d82918d5067721cc9d0e9a08", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "d65d3a965dd723dce23cc521a9f66efba051fe56d82918d5067721cc9d0e9a08", kill_on_drop: false }` [INFO] [stdout] d65d3a965dd723dce23cc521a9f66efba051fe56d82918d5067721cc9d0e9a08