[INFO] fetching crate cartograph 0.1.2... [INFO] checking cartograph-0.1.2 against master#8007b506ac5da629f223b755f5a5391edd5f6d01 for pr-88041 [INFO] extracting crate cartograph 0.1.2 into /workspace/builds/worker-46/source [INFO] validating manifest of crates.io crate cartograph 0.1.2 on toolchain 8007b506ac5da629f223b755f5a5391edd5f6d01 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+8007b506ac5da629f223b755f5a5391edd5f6d01" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate cartograph 0.1.2 [INFO] finished tweaking crates.io crate cartograph 0.1.2 [INFO] tweaked toml for crates.io crate cartograph 0.1.2 written to /workspace/builds/worker-46/source/Cargo.toml [INFO] crate crates.io crate cartograph 0.1.2 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+8007b506ac5da629f223b755f5a5391edd5f6d01" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded paste v1.0.2 [INFO] [stderr] Downloaded arctk v0.11.1 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-46/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-46/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+8007b506ac5da629f223b755f5a5391edd5f6d01" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 6c19e336b54f6ed2d01ed1213f7694c31642c9db3c2286bcb839e73af9e30cce [INFO] running `Command { std: "docker" "start" "-a" "6c19e336b54f6ed2d01ed1213f7694c31642c9db3c2286bcb839e73af9e30cce", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "6c19e336b54f6ed2d01ed1213f7694c31642c9db3c2286bcb839e73af9e30cce", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "6c19e336b54f6ed2d01ed1213f7694c31642c9db3c2286bcb839e73af9e30cce", kill_on_drop: false }` [INFO] [stdout] 6c19e336b54f6ed2d01ed1213f7694c31642c9db3c2286bcb839e73af9e30cce [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-46/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-46/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+8007b506ac5da629f223b755f5a5391edd5f6d01" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] c3d5113ccc05e4e57cae639fe8960487b7c70d9539f1a542bb4efa84e72c193c [INFO] running `Command { std: "docker" "start" "-a" "c3d5113ccc05e4e57cae639fe8960487b7c70d9539f1a542bb4efa84e72c193c", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling autocfg v1.0.1 [INFO] [stderr] Compiling libc v0.2.80 [INFO] [stderr] Compiling proc-macro2 v1.0.24 [INFO] [stderr] Compiling unicode-xid v0.2.1 [INFO] [stderr] Compiling libm v0.2.1 [INFO] [stderr] Compiling getrandom v0.1.15 [INFO] [stderr] Compiling syn v1.0.48 [INFO] [stderr] Checking lazy_static v1.4.0 [INFO] [stderr] Compiling memchr v2.3.4 [INFO] [stderr] Compiling const_fn v0.4.3 [INFO] [stderr] Compiling serde_derive v1.0.117 [INFO] [stderr] Compiling serde v1.0.117 [INFO] [stderr] Checking cfg-if v1.0.0 [INFO] [stderr] Compiling cfg-if v0.1.10 [INFO] [stderr] Compiling pkg-config v0.3.19 [INFO] [stderr] Compiling rayon-core v1.9.0 [INFO] [stderr] Checking scopeguard v1.1.0 [INFO] [stderr] Checking either v1.6.1 [INFO] [stderr] Compiling ppv-lite86 v0.2.10 [INFO] [stderr] Compiling regex-syntax v0.6.21 [INFO] [stderr] Compiling siphasher v0.3.3 [INFO] [stderr] Compiling cc v1.0.62 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Compiling ucd-trie v0.1.3 [INFO] [stderr] Compiling matrixmultiply v0.1.15 [INFO] [stderr] Compiling ndarray v0.13.1 [INFO] [stderr] Compiling typenum v1.12.0 [INFO] [stderr] Compiling maplit v1.0.2 [INFO] [stderr] Compiling version_check v0.9.2 [INFO] [stderr] Checking rawpointer v0.1.0 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling ryu v1.0.5 [INFO] [stderr] Compiling ndarray v0.12.1 [INFO] [stderr] Compiling netcdf-sys v0.3.3 [INFO] [stderr] Checking unicode-width v0.1.8 [INFO] [stderr] Checking bytemuck v1.4.1 [INFO] [stderr] Compiling serde_json v1.0.59 [INFO] [stderr] Compiling paste v1.0.2 [INFO] [stderr] Checking hashbrown v0.9.1 [INFO] [stderr] Checking number_prefix v0.3.0 [INFO] [stderr] Checking itoa v0.4.6 [INFO] [stderr] Checking hex v0.4.2 [INFO] [stderr] Checking slice-of-array v0.2.1 [INFO] [stderr] Compiling pest v2.1.3 [INFO] [stderr] Checking matrixmultiply v0.2.3 [INFO] [stderr] Compiling libloading v0.6.5 [INFO] [stderr] Compiling thread_local v1.0.1 [INFO] [stderr] Checking phf_shared v0.8.0 [INFO] [stderr] Checking itertools v0.7.11 [INFO] [stderr] Checking itertools v0.8.2 [INFO] [stderr] Checking rgb v0.8.25 [INFO] [stderr] Checking phf v0.8.0 [INFO] [stderr] Compiling generic-array v0.14.4 [INFO] [stderr] Compiling num-traits v0.2.14 [INFO] [stderr] Compiling crossbeam-utils v0.8.0 [INFO] [stderr] Compiling memoffset v0.5.6 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling num-integer v0.1.44 [INFO] [stderr] Compiling rayon v1.5.0 [INFO] [stderr] Compiling indexmap v1.6.0 [INFO] [stderr] Compiling num-rational v0.3.2 [INFO] [stderr] Checking ansi_rgb v0.2.0 [INFO] [stderr] Checking aho-corasick v0.7.15 [INFO] [stderr] Compiling pest_meta v2.1.3 [INFO] [stderr] Checking num_cpus v1.13.0 [INFO] [stderr] Checking terminal_size v0.1.13 [INFO] [stderr] Checking atty v0.2.14 [INFO] [stderr] Compiling quote v1.0.7 [INFO] [stderr] Checking colored v2.0.0 [INFO] [stderr] Checking rand_core v0.5.1 [INFO] [stderr] Checking crossbeam-epoch v0.9.0 [INFO] [stderr] Checking crossbeam-channel v0.5.0 [INFO] [stderr] Compiling rand_chacha v0.2.2 [INFO] [stderr] Compiling rand_pcg v0.2.1 [INFO] [stderr] Compiling libz-sys v1.1.2 [INFO] [stderr] Checking regex v1.4.2 [INFO] [stderr] Compiling rand v0.7.3 [INFO] [stderr] Checking crossbeam-deque v0.8.0 [INFO] [stderr] Checking approx v0.4.0 [INFO] [stderr] Checking noisy_float v0.1.13 [INFO] [stderr] Checking approx v0.3.2 [INFO] [stderr] Checking console v0.13.0 [INFO] [stderr] Checking indicatif v0.15.0 [INFO] [stderr] Compiling phf_generator v0.8.0 [INFO] [stderr] Compiling phf_codegen v0.8.0 [INFO] [stderr] Checking rand_distr v0.3.0 [INFO] [stderr] Compiling palette v0.5.0 [INFO] [stderr] Checking ndarray-parallel v0.9.1 [INFO] [stderr] Compiling pest_generator v2.1.3 [INFO] [stderr] Compiling hdf5-sys v0.7.0 [INFO] [stderr] Compiling palette_derive v0.5.0 [INFO] [stderr] Compiling arctk-proc v0.2.0 [INFO] [stderr] Compiling pest_derive v2.1.0 [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.7.0` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-ebf7e80d9302cf2c/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_NO_PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55e03a4e4cc0 - std::backtrace_rs::backtrace::libunwind::trace::h0197874f43e7190f [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stderr] 1: 0x55e03a4e4cc0 - std::backtrace_rs::backtrace::trace_unsynchronized::hfdfd566bbbda6f2d [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x55e03a4e4cc0 - std::sys_common::backtrace::_print_fmt::hb3b4707c15b032a1 [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x55e03a4e4cc0 - ::fmt::had1dceac8b072f88 [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x55e03a5033dc - core::fmt::write::h9a6d9c74526a6c1b [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/core/src/fmt/mod.rs:1117:17 [INFO] [stderr] 5: 0x55e03a4e20f5 - std::io::Write::write_fmt::h05c3bb2bc83b8ed0 [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/io/mod.rs:1667:15 [INFO] [stderr] 6: 0x55e03a4e678b - std::sys_common::backtrace::_print::h10f0826b2a586b58 [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x55e03a4e678b - std::sys_common::backtrace::print::h0d4242fbd1ac3eb6 [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x55e03a4e678b - std::panicking::default_hook::{{closure}}::h275ead39fe8b8e2a [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/panicking.rs:210:50 [INFO] [stderr] 9: 0x55e03a4e6300 - std::panicking::default_hook::h5505d4d90f5984d9 [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/panicking.rs:227:9 [INFO] [stderr] 10: 0x55e03a4e6e54 - std::panicking::rust_panic_with_hook::h2f8980d1d9fd4ca0 [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/panicking.rs:624:17 [INFO] [stderr] 11: 0x55e03a423362 - std::panicking::begin_panic::{{closure}}::hff02c23143dcd785 [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/panicking.rs:544:9 [INFO] [stderr] 12: 0x55e03a416629 - std::sys_common::backtrace::__rust_end_short_backtrace::h7e37c0f86bc55ae8 [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x55e03a4232a3 - std::panicking::begin_panic::h91b4edd4c5f43124 [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/panicking.rs:543:12 [INFO] [stderr] 14: 0x55e03a2eabb7 - build_script_build::LibrarySearcher::try_locate_hdf5_library::h64d5b86cae6757c5 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549:13 [INFO] [stderr] 15: 0x55e03a2ec387 - build_script_build::main::h92c67c9234296cd4 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:647:9 [INFO] [stderr] 16: 0x55e03a2f007b - core::ops::function::FnOnce::call_once::h6c79d3cf5d1e1c1a [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 17: 0x55e03a2f66ae - std::sys_common::backtrace::__rust_begin_short_backtrace::hfa803d4e57e918ad [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 18: 0x55e03a2f4b81 - std::rt::lang_start::{{closure}}::h5ceede1965eeb7b5 [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/rt.rs:63:18 [INFO] [stderr] 19: 0x55e03a4e735a - core::ops::function::impls:: for &F>::call_once::h5e3bbb97afe2bb03 [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 20: 0x55e03a4e735a - std::panicking::try::do_call::h48c2d717cec4bdcb [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/panicking.rs:403:40 [INFO] [stderr] 21: 0x55e03a4e735a - std::panicking::try::h2a49bc215893bc14 [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/panicking.rs:367:19 [INFO] [stderr] 22: 0x55e03a4e735a - std::panic::catch_unwind::h6d23b7c99550c7ff [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/panic.rs:129:14 [INFO] [stderr] 23: 0x55e03a4e735a - std::rt::lang_start_internal::{{closure}}::h251a0c0729f15896 [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/rt.rs:45:48 [INFO] [stderr] 24: 0x55e03a4e735a - std::panicking::try::do_call::h4830e784a9b9d1ad [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/panicking.rs:403:40 [INFO] [stderr] 25: 0x55e03a4e735a - std::panicking::try::h0427859d2ad3b3b9 [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/panicking.rs:367:19 [INFO] [stderr] 26: 0x55e03a4e735a - std::panic::catch_unwind::h4079bfb63395be0f [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/panic.rs:129:14 [INFO] [stderr] 27: 0x55e03a4e735a - std::rt::lang_start_internal::h408e9d26a25a1f08 [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/rt.rs:45:20 [INFO] [stderr] 28: 0x55e03a2f4b50 - std::rt::lang_start::h2bcca9b3bfc0ae45 [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/rt.rs:62:5 [INFO] [stderr] 29: 0x55e03a2ed83c - main [INFO] [stderr] 30: 0x7ff4297b30b3 - __libc_start_main [INFO] [stderr] 31: 0x55e03a2e5f5e - _start [INFO] [stderr] 32: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "c3d5113ccc05e4e57cae639fe8960487b7c70d9539f1a542bb4efa84e72c193c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "c3d5113ccc05e4e57cae639fe8960487b7c70d9539f1a542bb4efa84e72c193c", kill_on_drop: false }` [INFO] [stdout] c3d5113ccc05e4e57cae639fe8960487b7c70d9539f1a542bb4efa84e72c193c