[INFO] cloning repository https://github.com/38/pyd4 [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/38/pyd4" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F38%2Fpyd4", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F38%2Fpyd4'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 15f07e7e103cd4bd5474c7098c2c3d7a72ede2bd [INFO] checking 38/pyd4 against master#8007b506ac5da629f223b755f5a5391edd5f6d01 for pr-88041 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F38%2Fpyd4" "/workspace/builds/worker-3/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-3/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/38/pyd4 on toolchain 8007b506ac5da629f223b755f5a5391edd5f6d01 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+8007b506ac5da629f223b755f5a5391edd5f6d01" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/38/pyd4 [INFO] finished tweaking git repo https://github.com/38/pyd4 [INFO] tweaked toml for git repo https://github.com/38/pyd4 written to /workspace/builds/worker-3/source/Cargo.toml [INFO] crate git repo https://github.com/38/pyd4 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+8007b506ac5da629f223b755f5a5391edd5f6d01" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+8007b506ac5da629f223b755f5a5391edd5f6d01" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 12c897adc1129caad355199ada84a4e4a81bc3e4473bbb57c6b68ddb5ea0bf85 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "12c897adc1129caad355199ada84a4e4a81bc3e4473bbb57c6b68ddb5ea0bf85", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "12c897adc1129caad355199ada84a4e4a81bc3e4473bbb57c6b68ddb5ea0bf85", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "12c897adc1129caad355199ada84a4e4a81bc3e4473bbb57c6b68ddb5ea0bf85", kill_on_drop: false }` [INFO] [stdout] 12c897adc1129caad355199ada84a4e4a81bc3e4473bbb57c6b68ddb5ea0bf85 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+8007b506ac5da629f223b755f5a5391edd5f6d01" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 047e1ef78380730d147e29c6fc9c1d48af5ab93017d18b7dcf5b9e353bfa59f7 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "047e1ef78380730d147e29c6fc9c1d48af5ab93017d18b7dcf5b9e353bfa59f7", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.77 [INFO] [stderr] Compiling proc-macro2 v1.0.21 [INFO] [stderr] Compiling syn v1.0.41 [INFO] [stderr] Compiling memchr v2.3.3 [INFO] [stderr] Compiling glob v0.3.0 [INFO] [stderr] Compiling libloading v0.6.3 [INFO] [stderr] Compiling log v0.4.11 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Checking lazy_static v1.4.0 [INFO] [stderr] Compiling ansi_term v0.11.0 [INFO] [stderr] Compiling bindgen v0.55.1 [INFO] [stderr] Compiling lazycell v1.3.0 [INFO] [stderr] Compiling peeking_take_while v0.1.2 [INFO] [stderr] Compiling serde v1.0.116 [INFO] [stderr] Compiling ryu v1.0.5 [INFO] [stderr] Compiling serde_json v1.0.57 [INFO] [stderr] Compiling unindent v0.1.6 [INFO] [stderr] Compiling inventory v0.1.9 [INFO] [stderr] Checking itoa v0.4.6 [INFO] [stderr] Compiling pyo3 v0.12.1 [INFO] [stderr] Checking either v1.6.1 [INFO] [stderr] Compiling nom v5.1.2 [INFO] [stderr] Compiling crossbeam-utils v0.7.2 [INFO] [stderr] Compiling thread_local v1.0.1 [INFO] [stderr] Compiling memoffset v0.5.6 [INFO] [stderr] Compiling crossbeam-epoch v0.8.2 [INFO] [stderr] Compiling miniz_oxide v0.4.2 [INFO] [stderr] Compiling rayon v1.4.0 [INFO] [stderr] Checking instant v0.1.7 [INFO] [stderr] Checking lock_api v0.4.1 [INFO] [stderr] Compiling paste-impl v0.1.18 [INFO] [stderr] Compiling clang-sys v1.0.0 [INFO] [stderr] Compiling aho-corasick v0.7.13 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling which v3.1.1 [INFO] [stderr] Checking getrandom v0.1.15 [INFO] [stderr] Checking num_cpus v1.13.0 [INFO] [stderr] Checking memmap v0.7.0 [INFO] [stderr] Checking parking_lot_core v0.8.0 [INFO] [stderr] Compiling clap v2.33.3 [INFO] [stderr] Compiling quote v1.0.7 [INFO] [stderr] Checking crossbeam-channel v0.4.4 [INFO] [stderr] Checking paste v0.1.18 [INFO] [stderr] Checking rand_core v0.5.1 [INFO] [stderr] Checking flate2 v1.0.17 [INFO] [stderr] Checking parking_lot v0.11.0 [INFO] [stderr] Checking rand_chacha v0.2.2 [INFO] [stderr] Checking crossbeam-deque v0.7.3 [INFO] [stderr] Compiling regex v1.3.9 [INFO] [stderr] Checking rayon-core v1.8.1 [INFO] [stderr] Checking rand v0.7.3 [INFO] [stderr] Compiling env_logger v0.7.1 [INFO] [stderr] Compiling cexpr v0.4.0 [INFO] [stderr] Checking d4-framefile v0.1.13 [INFO] [stderr] Compiling pyo3-derive-backend v0.12.1 [INFO] [stderr] Compiling ghost v0.1.2 [INFO] [stderr] Compiling indoc-impl v0.3.6 [INFO] [stderr] Compiling ctor v0.1.15 [INFO] [stderr] Compiling inventory-impl v0.1.9 [INFO] [stderr] Compiling serde_derive v1.0.116 [INFO] [stderr] Compiling pyo3cls v0.12.1 [INFO] [stderr] Checking indoc v0.3.6 [INFO] [stderr] Compiling d4-hts v0.1.13 [INFO] [stderr] error: failed to run custom build command for `d4-hts v0.1.13` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/d4-hts-e0e23898c922ce00/build-script-build` (exit status: 101) [INFO] [stderr] --- stderr [INFO] [stderr] + pushd /opt/rustwide/target/debug/build/d4-hts-d435dc267558a928/out [INFO] [stderr] + HTSLIB_VERSION=1.11 [INFO] [stderr] + rm -rf /opt/rustwide/target/debug/build/d4-hts-d435dc267558a928/out/htslib [INFO] [stderr] + git clone -b 1.11 https://github.com/samtools/htslib.git [INFO] [stderr] Cloning into 'htslib'... [INFO] [stderr] fatal: unable to access 'https://github.com/samtools/htslib.git/': Could not resolve host: github.com [INFO] [stderr] thread 'main' panicked at 'assertion failed: Command::new(\"bash\").args(&[\"build_htslib.sh\",\n &version]).stdout(std::process::Stdio::null()).spawn().expect(\"Unable to build htslib\").wait().unwrap().success()', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/d4-hts-0.1.13/build.rs:34:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55b23c105bd0 - std::backtrace_rs::backtrace::libunwind::trace::h0197874f43e7190f [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stderr] 1: 0x55b23c105bd0 - std::backtrace_rs::backtrace::trace_unsynchronized::hfdfd566bbbda6f2d [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x55b23c105bd0 - std::sys_common::backtrace::_print_fmt::hb3b4707c15b032a1 [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x55b23c105bd0 - ::fmt::had1dceac8b072f88 [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x55b23c12a96c - core::fmt::write::h9a6d9c74526a6c1b [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/core/src/fmt/mod.rs:1117:17 [INFO] [stderr] 5: 0x55b23c102995 - std::io::Write::write_fmt::h05c3bb2bc83b8ed0 [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/io/mod.rs:1667:15 [INFO] [stderr] 6: 0x55b23c107adb - std::sys_common::backtrace::_print::h10f0826b2a586b58 [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x55b23c107adb - std::sys_common::backtrace::print::h0d4242fbd1ac3eb6 [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x55b23c107adb - std::panicking::default_hook::{{closure}}::h275ead39fe8b8e2a [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/panicking.rs:210:50 [INFO] [stderr] 9: 0x55b23c107650 - std::panicking::default_hook::h5505d4d90f5984d9 [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/panicking.rs:227:9 [INFO] [stderr] 10: 0x55b23c1081a4 - std::panicking::rust_panic_with_hook::h2f8980d1d9fd4ca0 [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/panicking.rs:624:17 [INFO] [stderr] 11: 0x55b23c107c52 - std::panicking::begin_panic_handler::{{closure}}::hd87853ef7e40ae97 [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/panicking.rs:519:13 [INFO] [stderr] 12: 0x55b23c1060d4 - std::sys_common::backtrace::__rust_end_short_backtrace::hcab167aa940694a2 [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x55b23c107be9 - rust_begin_unwind [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/panicking.rs:517:5 [INFO] [stderr] 14: 0x55b23bbc2981 - core::panicking::panic_fmt::hcf5f6d96e1dd7099 [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/core/src/panicking.rs:93:14 [INFO] [stderr] 15: 0x55b23bbc28cd - core::panicking::panic::hd695e3b1d0dd4ef4 [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/core/src/panicking.rs:50:5 [INFO] [stderr] 16: 0x55b23bbc3aa5 - build_script_build::build_own_htslib::h63f16c7200b95450 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/d4-hts-0.1.13/build.rs:34:5 [INFO] [stderr] 17: 0x55b23bbc3ede - build_script_build::main::hece462a5b2cb5d14 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/d4-hts-0.1.13/build.rs:66:9 [INFO] [stderr] 18: 0x55b23bbc552b - core::ops::function::FnOnce::call_once::h90022c0603e69761 [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 19: 0x55b23bbc7e4e - std::sys_common::backtrace::__rust_begin_short_backtrace::he91c20fb68c47542 [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 20: 0x55b23bbc54c1 - std::rt::lang_start::{{closure}}::h38487923bece2fb1 [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/rt.rs:63:18 [INFO] [stderr] 21: 0x55b23c1087aa - core::ops::function::impls:: for &F>::call_once::h5e3bbb97afe2bb03 [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 22: 0x55b23c1087aa - std::panicking::try::do_call::h48c2d717cec4bdcb [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/panicking.rs:403:40 [INFO] [stderr] 23: 0x55b23c1087aa - std::panicking::try::h2a49bc215893bc14 [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/panicking.rs:367:19 [INFO] [stderr] 24: 0x55b23c1087aa - std::panic::catch_unwind::h6d23b7c99550c7ff [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/panic.rs:129:14 [INFO] [stderr] 25: 0x55b23c1087aa - std::rt::lang_start_internal::{{closure}}::h251a0c0729f15896 [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/rt.rs:45:48 [INFO] [stderr] 26: 0x55b23c1087aa - std::panicking::try::do_call::h4830e784a9b9d1ad [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/panicking.rs:403:40 [INFO] [stderr] 27: 0x55b23c1087aa - std::panicking::try::h0427859d2ad3b3b9 [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/panicking.rs:367:19 [INFO] [stderr] 28: 0x55b23c1087aa - std::panic::catch_unwind::h4079bfb63395be0f [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/panic.rs:129:14 [INFO] [stderr] 29: 0x55b23c1087aa - std::rt::lang_start_internal::h408e9d26a25a1f08 [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/rt.rs:45:20 [INFO] [stderr] 30: 0x55b23bbc5490 - std::rt::lang_start::h2e28b9599e3fddf4 [INFO] [stderr] at /rustc/8007b506ac5da629f223b755f5a5391edd5f6d01/library/std/src/rt.rs:62:5 [INFO] [stderr] 31: 0x55b23bbc450c - main [INFO] [stderr] 32: 0x7fd70ab470b3 - __libc_start_main [INFO] [stderr] 33: 0x55b23bbc317e - _start [INFO] [stderr] 34: 0x0 - [INFO] running `Command { std: "docker" "inspect" "047e1ef78380730d147e29c6fc9c1d48af5ab93017d18b7dcf5b9e353bfa59f7", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "047e1ef78380730d147e29c6fc9c1d48af5ab93017d18b7dcf5b9e353bfa59f7", kill_on_drop: false }` [INFO] [stdout] 047e1ef78380730d147e29c6fc9c1d48af5ab93017d18b7dcf5b9e353bfa59f7