[INFO] fetching crate librna-sys 0.1.2... [INFO] checking librna-sys-0.1.2 against master#0599f3403366d9c57f0625e6de3af214b5042a90 for pr-87710 [INFO] extracting crate librna-sys 0.1.2 into /workspace/builds/worker-4/source [INFO] validating manifest of crates.io crate librna-sys 0.1.2 on toolchain 0599f3403366d9c57f0625e6de3af214b5042a90 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+0599f3403366d9c57f0625e6de3af214b5042a90" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate librna-sys 0.1.2 [INFO] removed 0 missing examples [INFO] finished tweaking crates.io crate librna-sys 0.1.2 [INFO] tweaked toml for crates.io crate librna-sys 0.1.2 written to /workspace/builds/worker-4/source/Cargo.toml [INFO] crate crates.io crate librna-sys 0.1.2 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+0599f3403366d9c57f0625e6de3af214b5042a90" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+0599f3403366d9c57f0625e6de3af214b5042a90" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 3d1bc314cce7bb87148869f85e501a022b06b058223038e2707b838f67609563 [INFO] running `Command { std: "docker" "start" "-a" "3d1bc314cce7bb87148869f85e501a022b06b058223038e2707b838f67609563", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "3d1bc314cce7bb87148869f85e501a022b06b058223038e2707b838f67609563", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "3d1bc314cce7bb87148869f85e501a022b06b058223038e2707b838f67609563", kill_on_drop: false }` [INFO] [stdout] 3d1bc314cce7bb87148869f85e501a022b06b058223038e2707b838f67609563 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+0599f3403366d9c57f0625e6de3af214b5042a90" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 557f48f990b00a2c3b6998743516ec34215acfe2c37e587ceba5bcd37dc941a5 [INFO] running `Command { std: "docker" "start" "-a" "557f48f990b00a2c3b6998743516ec34215acfe2c37e587ceba5bcd37dc941a5", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.19 [INFO] [stderr] Compiling unicode-xid v0.2.1 [INFO] [stderr] Compiling libc v0.2.76 [INFO] [stderr] Compiling syn v1.0.41 [INFO] [stderr] Compiling glob v0.3.0 [INFO] [stderr] Compiling cfg-if v0.1.10 [INFO] [stderr] Compiling version_check v0.9.2 [INFO] [stderr] Compiling libloading v0.6.3 [INFO] [stderr] Compiling proc-macro-hack v0.5.19 [INFO] [stderr] Compiling log v0.4.11 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling regex-syntax v0.6.18 [INFO] [stderr] Compiling unicode-width v0.1.8 [INFO] [stderr] Compiling humantime v2.1.0 [INFO] [stderr] Compiling termcolor v1.1.0 [INFO] [stderr] Compiling strsim v0.8.0 [INFO] [stderr] Compiling ansi_term v0.11.0 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling bindgen v0.58.1 [INFO] [stderr] Checking cfg-if v1.0.0 [INFO] [stderr] Compiling peeking_take_while v0.1.2 [INFO] [stderr] Compiling rustc-hash v1.1.0 [INFO] [stderr] Compiling lazycell v1.3.0 [INFO] [stderr] Compiling shlex v1.0.0 [INFO] [stderr] Checking smallvec v1.6.1 [INFO] [stderr] Checking scopeguard v1.1.0 [INFO] [stderr] Compiling inventory v0.1.10 [INFO] [stderr] Compiling unindent v0.1.7 [INFO] [stderr] Compiling pyo3 v0.13.2 [INFO] [stderr] Compiling memchr v2.3.3 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Checking instant v0.1.9 [INFO] [stderr] Checking lock_api v0.4.4 [INFO] [stderr] Compiling thread_local v1.0.1 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling aho-corasick v0.7.13 [INFO] [stderr] Compiling nom v5.1.2 [INFO] [stderr] Compiling clang-sys v1.0.0 [INFO] [stderr] Compiling quote v1.0.7 [INFO] [stderr] Checking parking_lot_core v0.8.3 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling which v3.1.1 [INFO] [stderr] Compiling clap v2.33.3 [INFO] [stderr] Checking parking_lot v0.11.1 [INFO] [stderr] Compiling paste-impl v0.1.18 [INFO] [stderr] Compiling regex v1.3.9 [INFO] [stderr] Checking paste v0.1.18 [INFO] [stderr] Compiling cexpr v0.4.0 [INFO] [stderr] Compiling env_logger v0.8.3 [INFO] [stderr] Compiling pyo3-macros-backend v0.13.2 [INFO] [stderr] Compiling indoc-impl v0.3.6 [INFO] [stderr] Compiling ctor v0.1.16 [INFO] [stderr] Compiling inventory-impl v0.1.10 [INFO] [stderr] Compiling ghost v0.1.2 [INFO] [stderr] Compiling pyo3-macros v0.13.2 [INFO] [stderr] Checking indoc v0.3.6 [INFO] [stderr] Compiling librna-sys v0.1.2 (/opt/rustwide/workdir) [INFO] [stderr] The following warnings were emitted during compilation: [INFO] [stderr] [INFO] [stderr] warning: LIBRNA_INCLUDE_DIR not set. [INFO] [stderr] warning: Using LIBRNA_INCLUDE_DIR=/usr/include as default. [INFO] [stderr] warning: LIBRNA_LIB_DIR not set. [INFO] [stderr] warning: Using LIBRNA_LIB_DIR=/usr/lib as default. [INFO] [stderr] [INFO] [stderr] error: failed to run custom build command for `librna-sys v0.1.2 (/opt/rustwide/workdir)` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/librna-sys-5a1b1b48ca388068/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] cargo:warning=LIBRNA_INCLUDE_DIR not set. [INFO] [stderr] cargo:warning=Using LIBRNA_INCLUDE_DIR=/usr/include as default. [INFO] [stderr] cargo:include=/usr/include [INFO] [stderr] cargo:warning=LIBRNA_LIB_DIR not set. [INFO] [stderr] cargo:warning=Using LIBRNA_LIB_DIR=/usr/lib as default. [INFO] [stderr] cargo:rustc-link-search=native=/usr/lib [INFO] [stderr] cargo:rustc-link-lib=static=RNA [INFO] [stderr] cargo:rerun-if-changed=src/wrapper.h [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] src/wrapper.h:1:10: fatal error: 'ViennaRNA/2Dfold.h' file not found [INFO] [stderr] src/wrapper.h:1:10: fatal error: 'ViennaRNA/2Dfold.h' file not found, err: true [INFO] [stderr] thread 'main' panicked at 'Unable to generate bindings: ()', src/build.rs:72:10 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x556d701fa90c - std::backtrace_rs::backtrace::libunwind::trace::ha21b6ba3016b6364 [INFO] [stderr] at /rustc/0599f3403366d9c57f0625e6de3af214b5042a90/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stderr] 1: 0x556d701fa90c - std::backtrace_rs::backtrace::trace_unsynchronized::hf515241a118c4e5a [INFO] [stderr] at /rustc/0599f3403366d9c57f0625e6de3af214b5042a90/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x556d701fa90c - std::sys_common::backtrace::_print_fmt::h339cd474d88b8467 [INFO] [stderr] at /rustc/0599f3403366d9c57f0625e6de3af214b5042a90/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x556d701fa90c - ::fmt::h06b8f714a0700be1 [INFO] [stderr] at /rustc/0599f3403366d9c57f0625e6de3af214b5042a90/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x556d7021e4cc - core::fmt::write::h9a6d9c74526a6c1b [INFO] [stderr] at /rustc/0599f3403366d9c57f0625e6de3af214b5042a90/library/core/src/fmt/mod.rs:1150:17 [INFO] [stderr] 5: 0x556d701f7755 - std::io::Write::write_fmt::hb1c61d571fcd8cbf [INFO] [stderr] at /rustc/0599f3403366d9c57f0625e6de3af214b5042a90/library/std/src/io/mod.rs:1667:15 [INFO] [stderr] 6: 0x556d701fc670 - std::sys_common::backtrace::_print::hcd1fe1237ea0c752 [INFO] [stderr] at /rustc/0599f3403366d9c57f0625e6de3af214b5042a90/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x556d701fc670 - std::sys_common::backtrace::print::hae7d6625a78cd32e [INFO] [stderr] at /rustc/0599f3403366d9c57f0625e6de3af214b5042a90/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x556d701fc670 - std::panicking::default_hook::{{closure}}::h9a7fffa4e6b396ed [INFO] [stderr] at /rustc/0599f3403366d9c57f0625e6de3af214b5042a90/library/std/src/panicking.rs:210:50 [INFO] [stderr] 9: 0x556d701fc22b - std::panicking::default_hook::h5dc58e323cddd123 [INFO] [stderr] at /rustc/0599f3403366d9c57f0625e6de3af214b5042a90/library/std/src/panicking.rs:227:9 [INFO] [stderr] 10: 0x556d701fcd24 - std::panicking::rust_panic_with_hook::hbef17e4338d7de57 [INFO] [stderr] at /rustc/0599f3403366d9c57f0625e6de3af214b5042a90/library/std/src/panicking.rs:624:17 [INFO] [stderr] 11: 0x556d701fc800 - std::panicking::begin_panic_handler::{{closure}}::hd8a92a4b1c3baae0 [INFO] [stderr] at /rustc/0599f3403366d9c57f0625e6de3af214b5042a90/library/std/src/panicking.rs:521:13 [INFO] [stderr] 12: 0x556d701fadd4 - std::sys_common::backtrace::__rust_end_short_backtrace::ha5ac263a7609ace8 [INFO] [stderr] at /rustc/0599f3403366d9c57f0625e6de3af214b5042a90/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x556d701fc769 - rust_begin_unwind [INFO] [stderr] at /rustc/0599f3403366d9c57f0625e6de3af214b5042a90/library/std/src/panicking.rs:517:5 [INFO] [stderr] 14: 0x556d6fcc98f1 - core::panicking::panic_fmt::hcf5f6d96e1dd7099 [INFO] [stderr] at /rustc/0599f3403366d9c57f0625e6de3af214b5042a90/library/core/src/panicking.rs:101:14 [INFO] [stderr] 15: 0x556d6fcc99e3 - core::result::unwrap_failed::he898b02f57993c42 [INFO] [stderr] at /rustc/0599f3403366d9c57f0625e6de3af214b5042a90/library/core/src/result.rs:1617:5 [INFO] [stderr] 16: 0x556d6fccbd95 - core::result::Result::expect::h147c7e5e0bd31f29 [INFO] [stderr] at /rustc/0599f3403366d9c57f0625e6de3af214b5042a90/library/core/src/result.rs:1259:23 [INFO] [stderr] 17: 0x556d6fccde9d - build_script_build::main::h4c11dc800a334ca6 [INFO] [stderr] at /opt/rustwide/workdir/src/build.rs:67:20 [INFO] [stderr] 18: 0x556d6fccbb3b - core::ops::function::FnOnce::call_once::hd9c720e196c033b2 [INFO] [stderr] at /rustc/0599f3403366d9c57f0625e6de3af214b5042a90/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 19: 0x556d6fccba2e - std::sys_common::backtrace::__rust_begin_short_backtrace::h893415e08f350942 [INFO] [stderr] at /rustc/0599f3403366d9c57f0625e6de3af214b5042a90/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 20: 0x556d6fccfaf1 - std::rt::lang_start::{{closure}}::h5fa33a63a1798fbd [INFO] [stderr] at /rustc/0599f3403366d9c57f0625e6de3af214b5042a90/library/std/src/rt.rs:63:18 [INFO] [stderr] 21: 0x556d701fd32a - core::ops::function::impls:: for &F>::call_once::hc9bc8961e4809a14 [INFO] [stderr] at /rustc/0599f3403366d9c57f0625e6de3af214b5042a90/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 22: 0x556d701fd32a - std::panicking::try::do_call::h6f00e12df2af6579 [INFO] [stderr] at /rustc/0599f3403366d9c57f0625e6de3af214b5042a90/library/std/src/panicking.rs:403:40 [INFO] [stderr] 23: 0x556d701fd32a - std::panicking::try::h588c31a0a9a8ad2c [INFO] [stderr] at /rustc/0599f3403366d9c57f0625e6de3af214b5042a90/library/std/src/panicking.rs:367:19 [INFO] [stderr] 24: 0x556d701fd32a - std::panic::catch_unwind::h8ebc4fcb0e51bec0 [INFO] [stderr] at /rustc/0599f3403366d9c57f0625e6de3af214b5042a90/library/std/src/panic.rs:129:14 [INFO] [stderr] 25: 0x556d701fd32a - std::rt::lang_start_internal::{{closure}}::had93e50fbfd893a1 [INFO] [stderr] at /rustc/0599f3403366d9c57f0625e6de3af214b5042a90/library/std/src/rt.rs:45:48 [INFO] [stderr] 26: 0x556d701fd32a - std::panicking::try::do_call::hf70c5056d8b410b7 [INFO] [stderr] at /rustc/0599f3403366d9c57f0625e6de3af214b5042a90/library/std/src/panicking.rs:403:40 [INFO] [stderr] 27: 0x556d701fd32a - std::panicking::try::h0c680320de5deb84 [INFO] [stderr] at /rustc/0599f3403366d9c57f0625e6de3af214b5042a90/library/std/src/panicking.rs:367:19 [INFO] [stderr] 28: 0x556d701fd32a - std::panic::catch_unwind::h7b94a99f13366c53 [INFO] [stderr] at /rustc/0599f3403366d9c57f0625e6de3af214b5042a90/library/std/src/panic.rs:129:14 [INFO] [stderr] 29: 0x556d701fd32a - std::rt::lang_start_internal::hca14fb2549072049 [INFO] [stderr] at /rustc/0599f3403366d9c57f0625e6de3af214b5042a90/library/std/src/rt.rs:45:20 [INFO] [stderr] 30: 0x556d6fccfac0 - std::rt::lang_start::h4167440c3844c086 [INFO] [stderr] at /rustc/0599f3403366d9c57f0625e6de3af214b5042a90/library/std/src/rt.rs:62:5 [INFO] [stderr] 31: 0x556d6fcce0fc - main [INFO] [stderr] 32: 0x7f6e7687b0b3 - __libc_start_main [INFO] [stderr] 33: 0x556d6fcca0ee - _start [INFO] [stderr] 34: 0x0 - [INFO] running `Command { std: "docker" "inspect" "557f48f990b00a2c3b6998743516ec34215acfe2c37e587ceba5bcd37dc941a5", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "557f48f990b00a2c3b6998743516ec34215acfe2c37e587ceba5bcd37dc941a5", kill_on_drop: false }` [INFO] [stdout] 557f48f990b00a2c3b6998743516ec34215acfe2c37e587ceba5bcd37dc941a5