[INFO] cloning repository https://github.com/Mr-Milk/SpatialTis-core [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/Mr-Milk/SpatialTis-core" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FMr-Milk%2FSpatialTis-core", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FMr-Milk%2FSpatialTis-core'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] a825e59a54c00f8506fbf0f109674b02e0b7d5b4 [INFO] checking Mr-Milk/SpatialTis-core against master#0599f3403366d9c57f0625e6de3af214b5042a90 for pr-87710 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FMr-Milk%2FSpatialTis-core" "/workspace/builds/worker-22/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-22/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/Mr-Milk/SpatialTis-core on toolchain 0599f3403366d9c57f0625e6de3af214b5042a90 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+0599f3403366d9c57f0625e6de3af214b5042a90" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/Mr-Milk/SpatialTis-core [INFO] finished tweaking git repo https://github.com/Mr-Milk/SpatialTis-core [INFO] tweaked toml for git repo https://github.com/Mr-Milk/SpatialTis-core written to /workspace/builds/worker-22/source/Cargo.toml [INFO] crate git repo https://github.com/Mr-Milk/SpatialTis-core already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+0599f3403366d9c57f0625e6de3af214b5042a90" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] warning: unused manifest key: target.x86_64-apple-darwin.rustflags [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded counter v0.5.2 [INFO] [stderr] Downloaded robust v0.2.3 [INFO] [stderr] Downloaded delaunator v0.2.1 [INFO] [stderr] Downloaded geo-types v0.7.2 [INFO] [stderr] Downloaded pyo3-macros v0.14.2 [INFO] [stderr] Downloaded simba v0.6.0 [INFO] [stderr] Downloaded geographiclib-rs v0.2.0 [INFO] [stderr] Downloaded rstar v0.8.3 [INFO] [stderr] Downloaded geo v0.18.0 [INFO] [stderr] Downloaded safe_arch v0.6.0 [INFO] [stderr] Downloaded nalgebra-sparse v0.5.0 [INFO] [stderr] Downloaded ndarray-stats v0.5.0 [INFO] [stderr] Downloaded hashbag v0.1.3 [INFO] [stderr] Downloaded kiddo v0.1.4 [INFO] [stderr] Downloaded nalgebra v0.29.0 [INFO] [stderr] Downloaded wide v0.7.0 [INFO] [stderr] Downloaded numpy v0.14.1 [INFO] [stderr] Downloaded pyo3-build-config v0.14.2 [INFO] [stderr] Downloaded pyo3-macros-backend v0.14.2 [INFO] [stderr] Downloaded pyo3 v0.14.2 [INFO] [stderr] Downloaded rstar v0.9.1 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-22/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-22/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+0599f3403366d9c57f0625e6de3af214b5042a90" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] f68fd0cad849af504a16e6524a52d2b597411d997f8a56221de9e8f93a63d1ba [INFO] running `Command { std: "docker" "start" "-a" "f68fd0cad849af504a16e6524a52d2b597411d997f8a56221de9e8f93a63d1ba", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "f68fd0cad849af504a16e6524a52d2b597411d997f8a56221de9e8f93a63d1ba", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f68fd0cad849af504a16e6524a52d2b597411d997f8a56221de9e8f93a63d1ba", kill_on_drop: false }` [INFO] [stdout] f68fd0cad849af504a16e6524a52d2b597411d997f8a56221de9e8f93a63d1ba [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-22/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-22/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+0599f3403366d9c57f0625e6de3af214b5042a90" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 63986616d6042b4d4141d28e0a96a90cc686c1f26912cc860470c8d1899d54f0 [INFO] running `Command { std: "docker" "start" "-a" "63986616d6042b4d4141d28e0a96a90cc686c1f26912cc860470c8d1899d54f0", kill_on_drop: false }` [INFO] [stderr] warning: unused manifest key: target.x86_64-apple-darwin.rustflags [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling autocfg v1.0.1 [INFO] [stderr] Compiling libm v0.2.1 [INFO] [stderr] Checking cfg-if v1.0.0 [INFO] [stderr] Compiling libc v0.2.99 [INFO] [stderr] Compiling typenum v1.13.0 [INFO] [stderr] Compiling proc-macro2 v1.0.28 [INFO] [stderr] Compiling unicode-xid v0.2.2 [INFO] [stderr] Compiling syn v1.0.74 [INFO] [stderr] Checking lazy_static v1.4.0 [INFO] [stderr] Compiling crossbeam-utils v0.8.5 [INFO] [stderr] Checking scopeguard v1.1.0 [INFO] [stderr] Compiling version_check v0.9.3 [INFO] [stderr] Compiling proc-macro-hack v0.5.19 [INFO] [stderr] Compiling pyo3-build-config v0.14.2 [INFO] [stderr] Compiling crossbeam-epoch v0.9.5 [INFO] [stderr] Checking smallvec v1.6.1 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Compiling rayon-core v1.9.1 [INFO] [stderr] Compiling once_cell v1.8.0 [INFO] [stderr] Compiling paste v1.0.5 [INFO] [stderr] Checking ppv-lite86 v0.2.10 [INFO] [stderr] Checking stable_deref_trait v1.2.0 [INFO] [stderr] Compiling heapless v0.6.1 [INFO] [stderr] Checking byteorder v1.4.3 [INFO] [stderr] Checking bytemuck v1.7.2 [INFO] [stderr] Checking either v1.6.1 [INFO] [stderr] Checking pdqselect v0.1.0 [INFO] [stderr] Compiling unindent v0.1.7 [INFO] [stderr] Compiling log v0.4.14 [INFO] [stderr] Compiling anyhow v1.0.43 [INFO] [stderr] Checking hashbrown v0.11.2 [INFO] [stderr] Checking cfg-if v0.1.10 [INFO] [stderr] Checking robust v0.2.3 [INFO] [stderr] Checking hashbag v0.1.3 [INFO] [stderr] Checking delaunator v0.2.1 [INFO] [stderr] Checking lock_api v0.4.4 [INFO] [stderr] Checking geographiclib-rs v0.2.0 [INFO] [stderr] Checking instant v0.1.10 [INFO] [stderr] Checking safe_arch v0.6.0 [INFO] [stderr] Checking hash32 v0.1.1 [INFO] [stderr] Checking matrixmultiply v0.3.1 [INFO] [stderr] Checking itertools v0.10.1 [INFO] [stderr] Compiling num-traits v0.2.14 [INFO] [stderr] Compiling num-integer v0.1.44 [INFO] [stderr] Compiling memoffset v0.6.4 [INFO] [stderr] Compiling num-rational v0.4.0 [INFO] [stderr] Compiling rayon v1.5.1 [INFO] [stderr] Compiling indexmap v1.7.0 [INFO] [stderr] Checking wide v0.7.0 [INFO] [stderr] Checking crossbeam-channel v0.5.1 [INFO] [stderr] Compiling generic-array v0.14.4 [INFO] [stderr] Compiling quote v1.0.9 [INFO] [stderr] Checking crossbeam-deque v0.8.1 [INFO] [stderr] Compiling pyo3 v0.14.2 [INFO] [stderr] Checking generic-array v0.12.4 [INFO] [stderr] Checking generic-array v0.13.3 [INFO] [stderr] Checking getrandom v0.2.3 [INFO] [stderr] Checking num_cpus v1.13.0 [INFO] [stderr] Checking parking_lot_core v0.8.3 [INFO] [stderr] Compiling paste-impl v0.1.18 [INFO] [stderr] Checking as-slice v0.1.5 [INFO] [stderr] Checking rand_core v0.6.3 [INFO] [stderr] Checking parking_lot v0.11.1 [INFO] [stderr] Checking rand_chacha v0.3.1 [INFO] [stderr] Checking num-complex v0.4.0 [INFO] [stderr] Checking approx v0.5.0 [INFO] [stderr] Checking approx v0.4.0 [INFO] [stderr] Checking noisy_float v0.2.0 [INFO] [stderr] Checking kiddo v0.1.4 [INFO] [stderr] Checking itertools-num v0.1.3 [INFO] [stderr] Checking counter v0.5.2 [INFO] [stderr] Checking rand v0.8.4 [INFO] [stderr] Checking paste v0.1.18 [INFO] [stderr] Checking rstar v0.8.3 [INFO] [stderr] Checking rstar v0.9.1 [INFO] [stderr] Checking simba v0.5.1 [INFO] [stderr] Checking simba v0.6.0 [INFO] [stderr] Checking geo-types v0.7.2 [INFO] [stderr] Checking rand_distr v0.4.1 [INFO] [stderr] Checking geo v0.18.0 [INFO] [stderr] Checking ndarray v0.15.3 [INFO] [stderr] Compiling pyo3-macros-backend v0.14.2 [INFO] [stderr] Compiling nalgebra-macros v0.1.0 [INFO] [stderr] Compiling indoc-impl v0.3.6 [INFO] [stderr] Checking indoc v0.3.6 [INFO] [stderr] Checking ndarray-stats v0.5.0 [INFO] [stderr] Compiling pyo3-macros v0.14.2 [INFO] [stderr] Checking nalgebra v0.29.0 [INFO] [stderr] Checking nalgebra v0.27.1 [INFO] [stderr] Checking numpy v0.14.1 [INFO] [stderr] Checking nalgebra-sparse v0.5.0 [INFO] [stderr] Checking statrs v0.15.0 [INFO] [stderr] Checking spatialtis_core v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused imports: `PyArray2`, `PyReadonlyArray1`, `PyReadonlyArray` [INFO] [stdout] --> src/lib.rs:6:52 [INFO] [stdout] | [INFO] [stdout] 6 | use numpy::{PyArray1, PyReadonlyArray2, ToPyArray, PyArray2, PyReadonlyArray1, PyReadonlyArray}; [INFO] [stdout] | ^^^^^^^^ ^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::hash::Hash` [INFO] [stdout] --> src/lib.rs:24:5 [INFO] [stdout] | [INFO] [stdout] 24 | use std::hash::Hash; [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `rayon::iter::IntoParallelRefIterator` [INFO] [stdout] --> src/corr.rs:5:5 [INFO] [stdout] | [INFO] [stdout] 5 | use rayon::iter::IntoParallelRefIterator; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `ndarray::prelude::*` [INFO] [stdout] --> src/stat.rs:2:5 [INFO] [stdout] | [INFO] [stdout] 2 | use ndarray::prelude::*; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `itertools::Itertools` [INFO] [stdout] --> src/stat.rs:3:5 [INFO] [stdout] | [INFO] [stdout] 3 | use itertools::Itertools; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::collections::HashMap` [INFO] [stdout] --> src/stat.rs:4:5 [INFO] [stdout] | [INFO] [stdout] 4 | use std::collections::HashMap; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `ndarray::prelude::*` [INFO] [stdout] --> src/entropy.rs:176:9 [INFO] [stdout] | [INFO] [stdout] 176 | use ndarray::prelude::*; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `PyArray2`, `PyReadonlyArray1`, `PyReadonlyArray` [INFO] [stdout] --> src/lib.rs:6:52 [INFO] [stdout] | [INFO] [stdout] 6 | use numpy::{PyArray1, PyReadonlyArray2, ToPyArray, PyArray2, PyReadonlyArray1, PyReadonlyArray}; [INFO] [stdout] | ^^^^^^^^ ^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::hash::Hash` [INFO] [stdout] --> src/lib.rs:24:5 [INFO] [stdout] | [INFO] [stdout] 24 | use std::hash::Hash; [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `rayon::iter::IntoParallelRefIterator` [INFO] [stdout] --> src/corr.rs:5:5 [INFO] [stdout] | [INFO] [stdout] 5 | use rayon::iter::IntoParallelRefIterator; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `ndarray::prelude::*` [INFO] [stdout] --> src/stat.rs:2:5 [INFO] [stdout] | [INFO] [stdout] 2 | use ndarray::prelude::*; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `itertools::Itertools` [INFO] [stdout] --> src/stat.rs:3:5 [INFO] [stdout] | [INFO] [stdout] 3 | use itertools::Itertools; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::collections::HashMap` [INFO] [stdout] --> src/stat.rs:4:5 [INFO] [stdout] | [INFO] [stdout] 4 | use std::collections::HashMap; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `ndarray::parallel::prelude` [INFO] [stdout] --> src/corr.rs:2:5 [INFO] [stdout] | [INFO] [stdout] 2 | use ndarray::parallel::prelude::*; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `ndarray::parallel::prelude` [INFO] [stdout] --> src/corr.rs:2:5 [INFO] [stdout] | [INFO] [stdout] 2 | use ndarray::parallel::prelude::*; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `py` [INFO] [stdout] --> src/lib.rs:163:33 [INFO] [stdout] | [INFO] [stdout] 163 | pub fn neighbor_components<'py>(py: Python<'py>, neighbors: Vec>, labels: Vec, types: Vec<&'py str>) [INFO] [stdout] | ^^ help: if this is intentional, prefix it with an underscore: `_py` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `py` [INFO] [stdout] --> src/lib.rs:163:33 [INFO] [stdout] | [INFO] [stdout] 163 | pub fn neighbor_components<'py>(py: Python<'py>, neighbors: Vec>, labels: Vec, types: Vec<&'py str>) [INFO] [stdout] | ^^ help: if this is intentional, prefix it with an underscore: `_py` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 8 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 9 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [optimized + debuginfo] target(s) in 1m 03s [INFO] running `Command { std: "docker" "inspect" "63986616d6042b4d4141d28e0a96a90cc686c1f26912cc860470c8d1899d54f0", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "63986616d6042b4d4141d28e0a96a90cc686c1f26912cc860470c8d1899d54f0", kill_on_drop: false }` [INFO] [stdout] 63986616d6042b4d4141d28e0a96a90cc686c1f26912cc860470c8d1899d54f0