[INFO] cloning repository https://github.com/IMTMarburg/mbf_bam [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/IMTMarburg/mbf_bam" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FIMTMarburg%2Fmbf_bam", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FIMTMarburg%2Fmbf_bam'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 7b70a70ee0d7c4e8eb11f2e3220c8173b0ac01c9 [INFO] checking IMTMarburg/mbf_bam against master#0599f3403366d9c57f0625e6de3af214b5042a90 for pr-87710 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FIMTMarburg%2Fmbf_bam" "/workspace/builds/worker-13/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-13/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/IMTMarburg/mbf_bam on toolchain 0599f3403366d9c57f0625e6de3af214b5042a90 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+0599f3403366d9c57f0625e6de3af214b5042a90" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/IMTMarburg/mbf_bam [INFO] finished tweaking git repo https://github.com/IMTMarburg/mbf_bam [INFO] tweaked toml for git repo https://github.com/IMTMarburg/mbf_bam written to /workspace/builds/worker-13/source/Cargo.toml [INFO] crate git repo https://github.com/IMTMarburg/mbf_bam already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+0599f3403366d9c57f0625e6de3af214b5042a90" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+0599f3403366d9c57f0625e6de3af214b5042a90" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] bc237bd60fe6ea80e25ecc27f257d8d64467527eb852e8b682e0f8ff97b51ba3 [INFO] running `Command { std: "docker" "start" "-a" "bc237bd60fe6ea80e25ecc27f257d8d64467527eb852e8b682e0f8ff97b51ba3", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "bc237bd60fe6ea80e25ecc27f257d8d64467527eb852e8b682e0f8ff97b51ba3", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "bc237bd60fe6ea80e25ecc27f257d8d64467527eb852e8b682e0f8ff97b51ba3", kill_on_drop: false }` [INFO] [stdout] bc237bd60fe6ea80e25ecc27f257d8d64467527eb852e8b682e0f8ff97b51ba3 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+0599f3403366d9c57f0625e6de3af214b5042a90" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 06b862ea588799b35d5194f0e6c1bf527ec7c57aa68b07230988ae3dd4fc95a8 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "06b862ea588799b35d5194f0e6c1bf527ec7c57aa68b07230988ae3dd4fc95a8", kill_on_drop: false }` [INFO] [stderr] Compiling autocfg v1.0.1 [INFO] [stderr] Compiling libc v0.2.79 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling cfg-if v1.0.0 [INFO] [stderr] Compiling either v1.5.2 [INFO] [stderr] Compiling unicode-xid v0.2.0 [INFO] [stderr] Compiling syn v1.0.73 [INFO] [stderr] Compiling proc-macro2 v0.4.27 [INFO] [stderr] Compiling unicode-xid v0.1.0 [INFO] [stderr] Compiling syn v0.15.30 [INFO] [stderr] Compiling memchr v2.2.1 [INFO] [stderr] Checking ppv-lite86 v0.2.10 [INFO] [stderr] Compiling serde v1.0.90 [INFO] [stderr] Checking cfg-if v0.1.10 [INFO] [stderr] Compiling pyo3-build-config v0.14.1 [INFO] [stderr] Checking scopeguard v1.1.0 [INFO] [stderr] Compiling getrandom v0.1.16 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling quick-error v1.2.2 [INFO] [stderr] Compiling byteorder v1.3.1 [INFO] [stderr] Compiling ryu v1.0.5 [INFO] [stderr] Checking smallvec v0.6.9 [INFO] [stderr] Checking regex-syntax v0.6.12 [INFO] [stderr] Compiling glob v0.3.0 [INFO] [stderr] Compiling unindent v0.1.7 [INFO] [stderr] Compiling failure_derive v0.1.5 [INFO] [stderr] Checking smallvec v1.4.2 [INFO] [stderr] Checking regex-automata v0.1.10 [INFO] [stderr] Compiling ndarray v0.14.0 [INFO] [stderr] Checking percent-encoding v2.1.0 [INFO] [stderr] Checking itoa v0.4.3 [INFO] [stderr] Compiling bio v0.37.0 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Checking fixedbitset v0.2.0 [INFO] [stderr] Checking bit-vec v0.5.1 [INFO] [stderr] Checking linear-map v1.2.0 [INFO] [stderr] Checking bytecount v0.6.2 [INFO] [stderr] Checking ieee754 v0.2.6 [INFO] [stderr] Checking fnv v1.0.6 [INFO] [stderr] Checking triple_accel v0.3.4 [INFO] [stderr] Checking instant v0.1.7 [INFO] [stderr] Checking thread_local v0.3.6 [INFO] [stderr] Compiling paste-impl v0.1.18 [INFO] [stderr] Checking lock_api v0.4.1 [INFO] [stderr] Checking matrixmultiply v0.3.1 [INFO] [stderr] Checking matrixmultiply v0.2.4 [INFO] [stderr] Compiling fs-utils v1.1.0 [INFO] [stderr] Compiling backtrace v0.3.15 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Checking unicode-normalization v0.1.8 [INFO] [stderr] Checking itertools v0.9.0 [INFO] [stderr] Checking miniz_oxide v0.3.5 [INFO] [stderr] Compiling memoffset v0.6.4 [INFO] [stderr] Compiling rayon v1.5.1 [INFO] [stderr] Compiling num-traits v0.2.14 [INFO] [stderr] Compiling num-integer v0.1.44 [INFO] [stderr] Compiling num-rational v0.3.2 [INFO] [stderr] Compiling indexmap v1.7.0 [INFO] [stderr] Compiling crossbeam-utils v0.8.5 [INFO] [stderr] Compiling proc-macro2 v1.0.27 [INFO] [stderr] Checking bit-set v0.5.1 [INFO] [stderr] Checking crc32fast v1.2.0 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Checking crossbeam-channel v0.5.1 [INFO] [stderr] Compiling quote v1.0.9 [INFO] [stderr] Checking aho-corasick v0.7.6 [INFO] [stderr] Checking csv-core v0.1.10 [INFO] [stderr] Checking fxhash v0.2.1 [INFO] [stderr] Checking paste v0.1.18 [INFO] [stderr] Compiling crossbeam-epoch v0.9.5 [INFO] [stderr] Compiling quote v0.6.12 [INFO] [stderr] Checking idna v0.2.0 [INFO] [stderr] Compiling num_cpus v1.10.0 [INFO] [stderr] Checking getrandom v0.2.3 [INFO] [stderr] Checking parking_lot_core v0.8.0 [INFO] [stderr] Checking flate2 v1.0.13 [INFO] [stderr] Compiling crossbeam-deque v0.8.0 [INFO] [stderr] Checking petgraph v0.5.1 [INFO] [stderr] Checking rand_core v0.6.3 [INFO] [stderr] Checking rand_core v0.5.1 [INFO] [stderr] Checking parking_lot v0.11.0 [INFO] [stderr] Compiling pyo3 v0.14.1 [INFO] [stderr] Compiling rayon-core v1.9.1 [INFO] [stderr] Checking url v2.1.1 [INFO] [stderr] Checking regex v1.3.1 [INFO] [stderr] Checking rand_chacha v0.3.1 [INFO] [stderr] Checking rand_chacha v0.2.2 [INFO] [stderr] Checking num-complex v0.3.1 [INFO] [stderr] Checking approx v0.4.0 [INFO] [stderr] Checking itertools-num v0.1.3 [INFO] [stderr] Checking ordered-float v1.0.2 [INFO] [stderr] Checking approx v0.3.2 [INFO] [stderr] Checking rand v0.7.3 [INFO] [stderr] Checking rand v0.8.4 [INFO] [stderr] Checking simba v0.4.0 [INFO] [stderr] Checking rand_distr v0.4.1 [INFO] [stderr] Compiling synstructure v0.10.1 [INFO] [stderr] Compiling cc v1.0.35 [INFO] [stderr] Compiling openssl-src v111.12.0+1.1.1h [INFO] [stderr] Compiling serde_derive v1.0.90 [INFO] [stderr] Compiling pyo3-macros-backend v0.14.1 [INFO] [stderr] Compiling libz-sys v1.1.2 [INFO] [stderr] Compiling openssl-sys v0.9.65 [INFO] [stderr] Compiling bzip2-sys v0.1.9+1.0.8 [INFO] [stderr] Compiling lzma-sys v0.1.17 [INFO] [stderr] Compiling curl-sys v0.4.36+curl-7.71.1 [INFO] [stderr] Compiling backtrace-sys v0.1.28 [INFO] [stderr] Compiling hts-sys v2.0.1 [INFO] [stderr] Checking failure v0.1.5 [INFO] [stderr] Compiling thiserror-impl v1.0.21 [INFO] [stderr] Compiling strum_macros v0.20.1 [INFO] [stderr] Compiling derive-new v0.5.8 [INFO] [stderr] Compiling enum-map-derive v0.4.6 [INFO] [stderr] Compiling indoc-impl v0.3.6 [INFO] [stderr] Compiling getset v0.0.9 [INFO] [stderr] Compiling pyo3-macros v0.14.1 [INFO] [stderr] Checking enum-map v0.6.4 [INFO] [stderr] Checking indoc v0.3.6 [INFO] [stderr] Checking thiserror v1.0.21 [INFO] [stderr] Checking nalgebra v0.26.2 [INFO] [stderr] Checking bio-types v0.12.0 [INFO] [stderr] Checking bstr v0.2.15 [INFO] [stderr] Checking bv v0.11.1 [INFO] [stderr] Checking multimap v0.8.3 [INFO] [stderr] Checking vec_map v0.8.1 [INFO] [stderr] Checking csv v1.1.6 [INFO] [stderr] Checking statrs v0.14.0 [INFO] [stderr] Checking rust-htslib v0.38.2 [INFO] [stderr] Checking mbf_bam v0.1.8 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/count_reads/counters.rs:398:13 [INFO] [stdout] | [INFO] [stdout] 398 | bam_in.fetch(bam::FetchDefinition::All); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_must_use)]` on by default [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 1 warning emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/count_reads/counters.rs:398:13 [INFO] [stdout] | [INFO] [stdout] 398 | bam_in.fetch(bam::FetchDefinition::All); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_must_use)]` on by default [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 1 warning emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 5m 48s [INFO] running `Command { std: "docker" "inspect" "06b862ea588799b35d5194f0e6c1bf527ec7c57aa68b07230988ae3dd4fc95a8", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "06b862ea588799b35d5194f0e6c1bf527ec7c57aa68b07230988ae3dd4fc95a8", kill_on_drop: false }` [INFO] [stdout] 06b862ea588799b35d5194f0e6c1bf527ec7c57aa68b07230988ae3dd4fc95a8