[INFO] fetching crate hdf5-sys 0.7.1... [INFO] checking hdf5-sys-0.7.1 against try#3e59a8c2f14152ccc92a6c079f592dc2dc6fa93f for pr-87248 [INFO] extracting crate hdf5-sys 0.7.1 into /workspace/builds/worker-2/source [INFO] validating manifest of crates.io crate hdf5-sys 0.7.1 on toolchain 3e59a8c2f14152ccc92a6c079f592dc2dc6fa93f [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+3e59a8c2f14152ccc92a6c079f592dc2dc6fa93f" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate hdf5-sys 0.7.1 [INFO] finished tweaking crates.io crate hdf5-sys 0.7.1 [INFO] tweaked toml for crates.io crate hdf5-sys 0.7.1 written to /workspace/builds/worker-2/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+3e59a8c2f14152ccc92a6c079f592dc2dc6fa93f" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+3e59a8c2f14152ccc92a6c079f592dc2dc6fa93f" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded bindgen v0.31.3 [INFO] [stderr] Downloaded build-probe-mpi v0.1.1 [INFO] [stderr] Downloaded mpi-sys v0.1.2 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+3e59a8c2f14152ccc92a6c079f592dc2dc6fa93f" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 41536b5493ab1af4d48b8f98b0b7ab17571557c84dd02e7ffbd31440447314b0 [INFO] running `Command { std: "docker" "start" "-a" "41536b5493ab1af4d48b8f98b0b7ab17571557c84dd02e7ffbd31440447314b0", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "41536b5493ab1af4d48b8f98b0b7ab17571557c84dd02e7ffbd31440447314b0", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "41536b5493ab1af4d48b8f98b0b7ab17571557c84dd02e7ffbd31440447314b0", kill_on_drop: false }` [INFO] [stdout] 41536b5493ab1af4d48b8f98b0b7ab17571557c84dd02e7ffbd31440447314b0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+3e59a8c2f14152ccc92a6c079f592dc2dc6fa93f" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 20392182fbd591609e64442be7077e216c396f4937e7b53143d4bdf6befd77d1 [INFO] running `Command { std: "docker" "start" "-a" "20392182fbd591609e64442be7077e216c396f4937e7b53143d4bdf6befd77d1", kill_on_drop: false }` [INFO] [stderr] Compiling regex-syntax v0.6.25 [INFO] [stderr] Compiling cfg-if v1.0.0 [INFO] [stderr] Compiling libc v0.2.98 [INFO] [stderr] Compiling pkg-config v0.3.19 [INFO] [stderr] Compiling memchr v2.4.0 [INFO] [stderr] Compiling libloading v0.6.7 [INFO] [stderr] Compiling aho-corasick v0.7.18 [INFO] [stderr] Compiling regex v1.5.4 [INFO] [stderr] Compiling hdf5-sys v0.7.1 (/opt/rustwide/workdir) [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.7.1 (/opt/rustwide/workdir)` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-4ef1eafef34fd08b/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_NO_PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', build.rs:549:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x556b7f3bc170 - std::backtrace_rs::backtrace::libunwind::trace::h0f5cd2ee8b0d7274 [INFO] [stderr] at /rustc/3e59a8c2f14152ccc92a6c079f592dc2dc6fa93f/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stderr] 1: 0x556b7f3bc170 - std::backtrace_rs::backtrace::trace_unsynchronized::h06905b5aeda069a1 [INFO] [stderr] at /rustc/3e59a8c2f14152ccc92a6c079f592dc2dc6fa93f/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x556b7f3bc170 - std::sys_common::backtrace::_print_fmt::h4fe4c7c875072f30 [INFO] [stderr] at /rustc/3e59a8c2f14152ccc92a6c079f592dc2dc6fa93f/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x556b7f3bc170 - ::fmt::hcc0746f004a9b7ef [INFO] [stderr] at /rustc/3e59a8c2f14152ccc92a6c079f592dc2dc6fa93f/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x556b7f3da6dc - core::fmt::write::h9a6d9c74526a6c1b [INFO] [stderr] at /rustc/3e59a8c2f14152ccc92a6c079f592dc2dc6fa93f/library/core/src/fmt/mod.rs:1115:17 [INFO] [stderr] 5: 0x556b7f3b9585 - std::io::Write::write_fmt::h23dab4cc9ce72ee2 [INFO] [stderr] at /rustc/3e59a8c2f14152ccc92a6c079f592dc2dc6fa93f/library/std/src/io/mod.rs:1665:15 [INFO] [stderr] 6: 0x556b7f3be1eb - std::sys_common::backtrace::_print::h173dc702502d65d2 [INFO] [stderr] at /rustc/3e59a8c2f14152ccc92a6c079f592dc2dc6fa93f/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x556b7f3be1eb - std::sys_common::backtrace::print::h61bd27c4742ba817 [INFO] [stderr] at /rustc/3e59a8c2f14152ccc92a6c079f592dc2dc6fa93f/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x556b7f3be1eb - std::panicking::default_hook::{{closure}}::hcaae87f0495ae613 [INFO] [stderr] at /rustc/3e59a8c2f14152ccc92a6c079f592dc2dc6fa93f/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x556b7f3bdcc1 - std::panicking::default_hook::h0538e728ee080db0 [INFO] [stderr] at /rustc/3e59a8c2f14152ccc92a6c079f592dc2dc6fa93f/library/std/src/panicking.rs:225:9 [INFO] [stderr] 10: 0x556b7f3be8b4 - std::panicking::rust_panic_with_hook::h3039e236b6ca482c [INFO] [stderr] at /rustc/3e59a8c2f14152ccc92a6c079f592dc2dc6fa93f/library/std/src/panicking.rs:622:17 [INFO] [stderr] 11: 0x556b7f1e6673 - std::panicking::begin_panic::{{closure}}::hdf9983629aba2c6d [INFO] [stderr] at /rustc/3e59a8c2f14152ccc92a6c079f592dc2dc6fa93f/library/std/src/panicking.rs:542:9 [INFO] [stderr] 12: 0x556b7f1e62c9 - std::sys_common::backtrace::__rust_end_short_backtrace::hd0c0fb69c8479bc7 [INFO] [stderr] at /rustc/3e59a8c2f14152ccc92a6c079f592dc2dc6fa93f/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x556b7f1e65a9 - std::panicking::begin_panic::hcdc9c5aff13791e2 [INFO] [stderr] at /rustc/3e59a8c2f14152ccc92a6c079f592dc2dc6fa93f/library/std/src/panicking.rs:541:12 [INFO] [stderr] 14: 0x556b7f1b6ed7 - build_script_build::LibrarySearcher::try_locate_hdf5_library::h5d9f8d2253dc1dcc [INFO] [stderr] at /opt/rustwide/workdir/build.rs:549:13 [INFO] [stderr] 15: 0x556b7f1b86fb - build_script_build::main::hc87f3ca323893b37 [INFO] [stderr] at /opt/rustwide/workdir/build.rs:647:9 [INFO] [stderr] 16: 0x556b7f1bc4ab - core::ops::function::FnOnce::call_once::h9bbcdef821c3468f [INFO] [stderr] at /rustc/3e59a8c2f14152ccc92a6c079f592dc2dc6fa93f/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 17: 0x556b7f1c2a8e - std::sys_common::backtrace::__rust_begin_short_backtrace::hb17487f619e4685d [INFO] [stderr] at /rustc/3e59a8c2f14152ccc92a6c079f592dc2dc6fa93f/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 18: 0x556b7f1c0fe1 - std::rt::lang_start::{{closure}}::hf204fc3b0f5eb87a [INFO] [stderr] at /rustc/3e59a8c2f14152ccc92a6c079f592dc2dc6fa93f/library/std/src/rt.rs:63:18 [INFO] [stderr] 19: 0x556b7f3bedba - core::ops::function::impls:: for &F>::call_once::h61bcc1dec5918b7e [INFO] [stderr] at /rustc/3e59a8c2f14152ccc92a6c079f592dc2dc6fa93f/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 20: 0x556b7f3bedba - std::panicking::try::do_call::h672d24f85ce22db4 [INFO] [stderr] at /rustc/3e59a8c2f14152ccc92a6c079f592dc2dc6fa93f/library/std/src/panicking.rs:401:40 [INFO] [stderr] 21: 0x556b7f3bedba - std::panicking::try::he383e7ef11604e58 [INFO] [stderr] at /rustc/3e59a8c2f14152ccc92a6c079f592dc2dc6fa93f/library/std/src/panicking.rs:365:19 [INFO] [stderr] 22: 0x556b7f3bedba - std::panic::catch_unwind::h502ac6058961e393 [INFO] [stderr] at /rustc/3e59a8c2f14152ccc92a6c079f592dc2dc6fa93f/library/std/src/panic.rs:434:14 [INFO] [stderr] 23: 0x556b7f3bedba - std::rt::lang_start_internal::{{closure}}::h851ee37bb5d99fdf [INFO] [stderr] at /rustc/3e59a8c2f14152ccc92a6c079f592dc2dc6fa93f/library/std/src/rt.rs:45:48 [INFO] [stderr] 24: 0x556b7f3bedba - std::panicking::try::do_call::h84f41bb3453bbd14 [INFO] [stderr] at /rustc/3e59a8c2f14152ccc92a6c079f592dc2dc6fa93f/library/std/src/panicking.rs:401:40 [INFO] [stderr] 25: 0x556b7f3bedba - std::panicking::try::h969c45dbbf2e4c94 [INFO] [stderr] at /rustc/3e59a8c2f14152ccc92a6c079f592dc2dc6fa93f/library/std/src/panicking.rs:365:19 [INFO] [stderr] 26: 0x556b7f3bedba - std::panic::catch_unwind::he40b1a4614f73e03 [INFO] [stderr] at /rustc/3e59a8c2f14152ccc92a6c079f592dc2dc6fa93f/library/std/src/panic.rs:434:14 [INFO] [stderr] 27: 0x556b7f3bedba - std::rt::lang_start_internal::h0fbab25cccdb30d8 [INFO] [stderr] at /rustc/3e59a8c2f14152ccc92a6c079f592dc2dc6fa93f/library/std/src/rt.rs:45:20 [INFO] [stderr] 28: 0x556b7f1c0fb0 - std::rt::lang_start::h133509857304e97d [INFO] [stderr] at /rustc/3e59a8c2f14152ccc92a6c079f592dc2dc6fa93f/library/std/src/rt.rs:62:5 [INFO] [stderr] 29: 0x556b7f1b9bec - main [INFO] [stderr] 30: 0x7f9971e240b3 - __libc_start_main [INFO] [stderr] 31: 0x556b7f1b1f2e - _start [INFO] [stderr] 32: 0x0 - [INFO] running `Command { std: "docker" "inspect" "20392182fbd591609e64442be7077e216c396f4937e7b53143d4bdf6befd77d1", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "20392182fbd591609e64442be7077e216c396f4937e7b53143d4bdf6befd77d1", kill_on_drop: false }` [INFO] [stdout] 20392182fbd591609e64442be7077e216c396f4937e7b53143d4bdf6befd77d1