[INFO] cloning repository https://github.com/Cardosaum/cdr3-parser [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/Cardosaum/cdr3-parser" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FCardosaum%2Fcdr3-parser", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FCardosaum%2Fcdr3-parser'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 2ca94ea3d440f1f54bff9854ed408ea406ecafd5 [INFO] checking Cardosaum/cdr3-parser against try#3e59a8c2f14152ccc92a6c079f592dc2dc6fa93f for pr-87248 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FCardosaum%2Fcdr3-parser" "/workspace/builds/worker-13/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-13/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/Cardosaum/cdr3-parser on toolchain 3e59a8c2f14152ccc92a6c079f592dc2dc6fa93f [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+3e59a8c2f14152ccc92a6c079f592dc2dc6fa93f" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/Cardosaum/cdr3-parser [INFO] finished tweaking git repo https://github.com/Cardosaum/cdr3-parser [INFO] tweaked toml for git repo https://github.com/Cardosaum/cdr3-parser written to /workspace/builds/worker-13/source/Cargo.toml [INFO] crate git repo https://github.com/Cardosaum/cdr3-parser already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+3e59a8c2f14152ccc92a6c079f592dc2dc6fa93f" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... 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running `Command { std: "docker" "inspect" "421629fff9c67c8989eb9e3d0d9b49504b12a0ca1cd2167d5b6bbf762b43d680", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "421629fff9c67c8989eb9e3d0d9b49504b12a0ca1cd2167d5b6bbf762b43d680", kill_on_drop: false }` [INFO] [stdout] 421629fff9c67c8989eb9e3d0d9b49504b12a0ca1cd2167d5b6bbf762b43d680 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+3e59a8c2f14152ccc92a6c079f592dc2dc6fa93f" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 86f0fbdc2d4632f810845724f14d66f094f9805f23ba8f4f4674236bd9caff39 [INFO] running `Command { std: "docker" "start" "-a" "86f0fbdc2d4632f810845724f14d66f094f9805f23ba8f4f4674236bd9caff39", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling autocfg v1.0.1 [INFO] [stderr] Compiling proc-macro2 v1.0.27 [INFO] [stderr] Compiling unicode-xid v0.2.2 [INFO] [stderr] Compiling syn v1.0.73 [INFO] [stderr] Compiling libc v0.2.97 [INFO] [stderr] Checking cfg-if v1.0.0 [INFO] [stderr] Compiling serde_derive v1.0.126 [INFO] [stderr] Checking lazy_static v1.4.0 [INFO] [stderr] Compiling getrandom v0.1.16 [INFO] [stderr] Checking ppv-lite86 v0.2.10 [INFO] [stderr] Compiling typenum v1.13.0 [INFO] [stderr] Compiling strsim v0.10.0 [INFO] [stderr] Compiling ident_case v1.0.1 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling ryu v1.0.5 [INFO] [stderr] Compiling crossbeam-epoch v0.9.5 [INFO] [stderr] Compiling fnv v1.0.7 [INFO] [stderr] Compiling rayon-core v1.9.1 [INFO] [stderr] Compiling fs_extra v1.2.0 [INFO] [stderr] Compiling unicode-segmentation v1.7.1 [INFO] [stderr] Checking scopeguard v1.1.0 [INFO] [stderr] Compiling cc v1.0.68 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Compiling ndarray v0.14.0 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Checking regex-syntax v0.6.25 [INFO] [stderr] Checking hashbrown v0.9.1 [INFO] [stderr] Compiling anyhow v1.0.41 [INFO] [stderr] Checking itoa 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Checking bstr v0.2.16 [INFO] [stderr] Checking multimap v0.8.3 [INFO] [stderr] Checking serde_json v1.0.64 [INFO] [stderr] Checking serde_with v1.9.3 [INFO] [stderr] Checking clap v2.33.3 [INFO] [stderr] Checking csv v1.1.6 [INFO] [stderr] Checking jemallocator v0.3.2 [INFO] [stderr] Checking cdr3-parser v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `Arg` [INFO] [stdout] --> src/app.rs:1:45 [INFO] [stdout] | [INFO] [stdout] 1 | use clap::{crate_version, App, AppSettings, Arg}; [INFO] [stdout] | ^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `App`, `Arg`, `Error`, `SubCommand` [INFO] [stdout] --> src/cdr3/cdr3.rs:1:12 [INFO] [stdout] | [INFO] [stdout] 1 | use clap::{App, Arg, Error, SubCommand}; [INFO] [stdout] | ^^^ ^^^ ^^^^^ ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `csv::Writer` [INFO] [stdout] --> src/cdr3/cdr3.rs:2:5 [INFO] [stdout] | [INFO] [stdout] 2 | use csv::Writer; [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Deserialize` [INFO] [stdout] --> src/cdr3/cdr3.rs:6:13 [INFO] [stdout] | [INFO] [stdout] 6 | use serde::{Deserialize, Serialize}; [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `OpenOptions`, `self` [INFO] [stdout] --> src/cdr3/cdr3.rs:10:15 [INFO] [stdout] | [INFO] [stdout] 10 | use std::fs::{self, File, OpenOptions}; [INFO] [stdout] | ^^^^ ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Path` [INFO] [stdout] --> src/cdr3/cdr3.rs:13:17 [INFO] [stdout] | [INFO] [stdout] 13 | use std::path::{Path, PathBuf}; [INFO] [stdout] | ^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `env` [INFO] [stdout] --> src/cdr3/cdr3.rs:14:11 [INFO] [stdout] | [INFO] [stdout] 14 | use std::{env, str}; [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `num::pow` [INFO] [stdout] --> src/cdr3/isoelectric_point.rs:33:5 [INFO] [stdout] | [INFO] [stdout] 33 | use num::pow; [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `num::pow` [INFO] [stdout] --> src/cdr3/protein_analysis.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 8 | use num::pow; [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `serde_json::json` [INFO] [stdout] --> src/cdr3/protein_analysis.rs:10:5 [INFO] [stdout] | [INFO] [stdout] 10 | use serde_json::json; [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `HashSet` [INFO] [stdout] --> src/cdr3/protein_analysis.rs:11:33 [INFO] [stdout] | [INFO] [stdout] 11 | use std::collections::{HashMap, HashSet}; [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `App`, `Arg`, `Error`, `SubCommand` [INFO] [stdout] --> src/main.rs:13:12 [INFO] [stdout] | [INFO] [stdout] 13 | use clap::{App, Arg, Error, SubCommand}; [INFO] [stdout] | ^^^ ^^^ ^^^^^ ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `csv::Writer` [INFO] [stdout] --> src/main.rs:14:5 [INFO] [stdout] | [INFO] [stdout] 14 | use csv::Writer; [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `serde_json::json` [INFO] [stdout] --> src/main.rs:15:5 [INFO] [stdout] | [INFO] [stdout] 15 | use serde_json::json; [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `File`, `OpenOptions`, `self` [INFO] [stdout] --> src/main.rs:16:15 [INFO] [stdout] | [INFO] [stdout] 16 | use std::fs::{self, File, OpenOptions}; [INFO] [stdout] | ^^^^ ^^^^ ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `BufReader`, `prelude::*`, `self` [INFO] [stdout] --> src/main.rs:17:15 [INFO] [stdout] | [INFO] [stdout] 17 | use std::io::{self, prelude::*, BufReader}; [INFO] [stdout] | ^^^^ ^^^^^^^^^^ ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::iter::FromIterator` [INFO] [stdout] --> src/main.rs:18:5 [INFO] [stdout] | [INFO] [stdout] 18 | use std::iter::FromIterator; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `str` [INFO] [stdout] --> src/main.rs:20:16 [INFO] [stdout] | [INFO] [stdout] 20 | use std::{env, str}; [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Arg` [INFO] [stdout] --> src/app.rs:1:45 [INFO] [stdout] | [INFO] [stdout] 1 | use clap::{crate_version, App, AppSettings, Arg}; [INFO] [stdout] | ^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `App`, `Arg`, `Error`, `SubCommand` [INFO] [stdout] --> src/cdr3/cdr3.rs:1:12 [INFO] [stdout] | [INFO] [stdout] 1 | use clap::{App, Arg, Error, SubCommand}; [INFO] [stdout] | ^^^ ^^^ ^^^^^ ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `csv::Writer` [INFO] [stdout] --> src/cdr3/cdr3.rs:2:5 [INFO] [stdout] | [INFO] [stdout] 2 | use csv::Writer; [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Deserialize` [INFO] [stdout] --> src/cdr3/cdr3.rs:6:13 [INFO] [stdout] | [INFO] [stdout] 6 | use serde::{Deserialize, Serialize}; [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `OpenOptions`, `self` [INFO] [stdout] --> src/cdr3/cdr3.rs:10:15 [INFO] [stdout] | [INFO] [stdout] 10 | use std::fs::{self, File, OpenOptions}; [INFO] [stdout] | ^^^^ ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Path` [INFO] [stdout] --> src/cdr3/cdr3.rs:13:17 [INFO] [stdout] | [INFO] [stdout] 13 | use std::path::{Path, PathBuf}; [INFO] [stdout] | ^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `env` [INFO] [stdout] --> src/cdr3/cdr3.rs:14:11 [INFO] [stdout] | [INFO] [stdout] 14 | use std::{env, str}; [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `num::pow` [INFO] [stdout] --> src/cdr3/isoelectric_point.rs:33:5 [INFO] [stdout] | [INFO] [stdout] 33 | use num::pow; [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `num::pow` [INFO] [stdout] --> src/cdr3/protein_analysis.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 8 | use num::pow; [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `serde_json::json` [INFO] [stdout] --> src/cdr3/protein_analysis.rs:10:5 [INFO] [stdout] | [INFO] [stdout] 10 | use serde_json::json; [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `HashSet` [INFO] [stdout] --> src/cdr3/protein_analysis.rs:11:33 [INFO] [stdout] | [INFO] [stdout] 11 | use std::collections::{HashMap, HashSet}; [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `App`, `Arg`, `Error`, `SubCommand` [INFO] [stdout] --> src/main.rs:13:12 [INFO] [stdout] | [INFO] [stdout] 13 | use clap::{App, Arg, Error, SubCommand}; [INFO] [stdout] | ^^^ ^^^ ^^^^^ ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `csv::Writer` [INFO] [stdout] --> src/main.rs:14:5 [INFO] [stdout] | [INFO] [stdout] 14 | use csv::Writer; [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `serde_json::json` [INFO] [stdout] --> src/main.rs:15:5 [INFO] [stdout] | [INFO] [stdout] 15 | use serde_json::json; [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `File`, `OpenOptions`, `self` [INFO] [stdout] --> src/main.rs:16:15 [INFO] [stdout] | [INFO] [stdout] 16 | use std::fs::{self, File, OpenOptions}; [INFO] [stdout] | ^^^^ ^^^^ ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `BufReader`, `prelude::*`, `self` [INFO] [stdout] --> src/main.rs:17:15 [INFO] [stdout] | [INFO] [stdout] 17 | use std::io::{self, prelude::*, BufReader}; [INFO] [stdout] | ^^^^ ^^^^^^^^^^ ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::iter::FromIterator` [INFO] [stdout] --> src/main.rs:18:5 [INFO] [stdout] | [INFO] [stdout] 18 | use std::iter::FromIterator; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `str` [INFO] [stdout] --> src/main.rs:20:16 [INFO] [stdout] | [INFO] [stdout] 20 | use std::{env, str}; [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `output_file` [INFO] [stdout] --> src/main.rs:55:9 [INFO] [stdout] | [INFO] [stdout] 55 | let output_file = PathBuf::from( [INFO] [stdout] | ^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_output_file` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `output_file` [INFO] [stdout] --> src/main.rs:55:9 [INFO] [stdout] | [INFO] [stdout] 55 | let output_file = PathBuf::from( [INFO] [stdout] | ^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_output_file` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `aa` [INFO] [stdout] --> src/cdr3/cdr3.rs:92:13 [INFO] [stdout] | [INFO] [stdout] 92 | let aa = match monoisotopic_protein_weights.get_key_value(&str::from_utf8(&[c]).unwrap()) { [INFO] [stdout] | ^^ help: if this is intentional, prefix it with an underscore: `_aa` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `sequence` [INFO] [stdout] --> src/cdr3/cdr3.rs:122:24 [INFO] [stdout] | [INFO] [stdout] 122 | pub fn aa_groups<'seq>(sequence: String) -> BTreeMap> { [INFO] [stdout] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_sequence` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `n` [INFO] [stdout] --> src/cdr3/isoelectric_point.rs:152:25 [INFO] [stdout] | [INFO] [stdout] 152 | if let Some(n) = pKnterminal.get_mut(&nterm) {} [INFO] [stdout] | ^ help: if this is intentional, prefix it with an underscore: `_n` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `v` [INFO] [stdout] --> src/cdr3/protein_analysis.rs:253:22 [INFO] [stdout] | [INFO] [stdout] 253 | for (aa, v) in &self.count_amino_acids() { [INFO] [stdout] | ^ help: if this is intentional, prefix it with an underscore: `_v` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `v` [INFO] [stdout] --> src/cdr3/protein_analysis.rs:290:30 [INFO] [stdout] | [INFO] [stdout] 290 | .filter(|(k, v)| **k == 'Y' || **k == 'W' || **k == 'F') [INFO] [stdout] | ^ help: if this is intentional, prefix it with an underscore: `_v` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `k` [INFO] [stdout] --> src/cdr3/protein_analysis.rs:291:24 [INFO] [stdout] | [INFO] [stdout] 291 | .map(|(k, v)| *v) [INFO] [stdout] | ^ help: if this is intentional, prefix it with an underscore: `_k` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `aromatic_aas` [INFO] [stdout] --> src/cdr3/protein_analysis.rs:285:17 [INFO] [stdout] | [INFO] [stdout] 285 | let aromatic_aas = "YWF"; [INFO] [stdout] | ^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_aromatic_aas` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `aromaticity` [INFO] [stdout] --> src/cdr3/protein_analysis.rs:286:17 [INFO] [stdout] | [INFO] [stdout] 286 | let aromaticity: f64 = 0.0; [INFO] [stdout] | ^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_aromaticity` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/app.rs:10:9 [INFO] [stdout] | [INFO] [stdout] 10 | let mut app = App::new("cdr3-parser") [INFO] [stdout] | ----^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `aa` [INFO] [stdout] --> src/cdr3/cdr3.rs:92:13 [INFO] [stdout] | [INFO] [stdout] 92 | let aa = match monoisotopic_protein_weights.get_key_value(&str::from_utf8(&[c]).unwrap()) { [INFO] [stdout] | ^^ help: if this is intentional, prefix it with an underscore: `_aa` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `sequence` [INFO] [stdout] --> src/cdr3/cdr3.rs:122:24 [INFO] [stdout] | [INFO] [stdout] 122 | pub fn aa_groups<'seq>(sequence: String) -> BTreeMap> { [INFO] [stdout] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_sequence` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `n` [INFO] [stdout] --> src/cdr3/isoelectric_point.rs:152:25 [INFO] [stdout] | [INFO] [stdout] 152 | if let Some(n) = pKnterminal.get_mut(&nterm) {} [INFO] [stdout] | ^ help: if this is intentional, prefix it with an underscore: `_n` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `v` [INFO] [stdout] --> src/cdr3/protein_analysis.rs:253:22 [INFO] [stdout] | [INFO] [stdout] 253 | for (aa, v) in &self.count_amino_acids() { [INFO] [stdout] | ^ help: if this is intentional, prefix it with an underscore: `_v` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `v` [INFO] [stdout] --> src/cdr3/protein_analysis.rs:290:30 [INFO] [stdout] | [INFO] [stdout] 290 | .filter(|(k, v)| **k == 'Y' || **k == 'W' || **k == 'F') [INFO] [stdout] | ^ help: if this is intentional, prefix it with an underscore: `_v` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `k` [INFO] [stdout] --> src/cdr3/protein_analysis.rs:291:24 [INFO] [stdout] | [INFO] [stdout] 291 | .map(|(k, v)| *v) [INFO] [stdout] | ^ help: if this is intentional, prefix it with an underscore: `_k` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `aromatic_aas` [INFO] [stdout] --> src/cdr3/protein_analysis.rs:285:17 [INFO] [stdout] | [INFO] [stdout] 285 | let aromatic_aas = "YWF"; [INFO] [stdout] | ^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_aromatic_aas` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `aromaticity` [INFO] [stdout] --> src/cdr3/protein_analysis.rs:286:17 [INFO] [stdout] | [INFO] [stdout] 286 | let aromaticity: f64 = 0.0; [INFO] [stdout] | ^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_aromaticity` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/app.rs:10:9 [INFO] [stdout] | [INFO] [stdout] 10 | let mut app = App::new("cdr3-parser") [INFO] [stdout] | ----^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/cdr3/cdr3.rs:269:15 [INFO] [stdout] | [INFO] [stdout] 269 | fn parse_file(mut input_file: PathBuf) -> Vec { [INFO] [stdout] | ----^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/cdr3/cdr3.rs:291:22 [INFO] [stdout] | [INFO] [stdout] 291 | pub fn pipeline_cdr3(mut input_file: PathBuf) -> Result<(), Box> { [INFO] [stdout] | ----^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/cdr3/isoelectric_point.rs:134:17 [INFO] [stdout] | [INFO] [stdout] 134 | let mut pos_pKs: HashMap = POSITIVE_PKS.clone(); [INFO] [stdout] | ----^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/cdr3/isoelectric_point.rs:135:17 [INFO] [stdout] | [INFO] [stdout] 135 | let mut neg_pKs: HashMap = NEGATIVE_PKS.clone(); [INFO] [stdout] | ----^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/cdr3/cdr3.rs:269:15 [INFO] [stdout] | [INFO] [stdout] 269 | fn parse_file(mut input_file: PathBuf) -> Vec { [INFO] [stdout] | ----^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/cdr3/cdr3.rs:291:22 [INFO] [stdout] | [INFO] [stdout] 291 | pub fn pipeline_cdr3(mut input_file: PathBuf) -> Result<(), Box> { [INFO] [stdout] | ----^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/cdr3/isoelectric_point.rs:134:17 [INFO] [stdout] | [INFO] [stdout] 134 | let mut pos_pKs: HashMap = POSITIVE_PKS.clone(); [INFO] [stdout] | ----^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/cdr3/isoelectric_point.rs:135:17 [INFO] [stdout] | [INFO] [stdout] 135 | let mut neg_pKs: HashMap = NEGATIVE_PKS.clone(); [INFO] [stdout] | ----^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `molecular_weight` [INFO] [stdout] --> src/cdr3/cdr3.rs:62:8 [INFO] [stdout] | [INFO] [stdout] 62 | pub fn molecular_weight(sequence: &str) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `aromaticity` [INFO] [stdout] --> src/cdr3/cdr3.rs:104:8 [INFO] [stdout] | [INFO] [stdout] 104 | pub fn aromaticity(sequence: &str) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `create_cdr3_dict` [INFO] [stdout] --> src/cdr3/cdr3.rs:111:8 [INFO] [stdout] | [INFO] [stdout] 111 | pub fn create_cdr3_dict(cdr3_sequence: Vec) -> BTreeMap { [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `aa_groups` [INFO] [stdout] --> src/cdr3/cdr3.rs:122:8 [INFO] [stdout] | [INFO] [stdout] 122 | pub fn aa_groups<'seq>(sequence: String) -> BTreeMap> { [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `molecular_weight` [INFO] [stdout] --> src/cdr3/cdr3.rs:62:8 [INFO] [stdout] | [INFO] [stdout] 62 | pub fn molecular_weight(sequence: &str) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `aromaticity` [INFO] [stdout] --> src/cdr3/cdr3.rs:104:8 [INFO] [stdout] | [INFO] [stdout] 104 | pub fn aromaticity(sequence: &str) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `create_cdr3_dict` [INFO] [stdout] --> src/cdr3/cdr3.rs:111:8 [INFO] [stdout] | [INFO] [stdout] 111 | pub fn create_cdr3_dict(cdr3_sequence: Vec) -> BTreeMap { [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `aa_groups` [INFO] [stdout] --> src/cdr3/cdr3.rs:122:8 [INFO] [stdout] | [INFO] [stdout] 122 | pub fn aa_groups<'seq>(sequence: String) -> BTreeMap> { [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/main.rs:102:5 [INFO] [stdout] | [INFO] [stdout] 102 | pipeline_cdr3(input_file); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_must_use)]` on by default [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `MW` should have a snake case name [INFO] [stdout] --> src/cdr3/cdr3.rs:25:9 [INFO] [stdout] | [INFO] [stdout] 25 | pub MW: f64, [INFO] [stdout] | ^^ help: convert the identifier to snake case: `mw` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_snake_case)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `AV` should have a snake case name [INFO] [stdout] --> src/cdr3/cdr3.rs:26:9 [INFO] [stdout] | [INFO] [stdout] 26 | pub AV: f64, [INFO] [stdout] | ^^ help: convert the identifier to snake case: `av` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `IP` should have a snake case name [INFO] [stdout] --> src/cdr3/cdr3.rs:27:5 [INFO] [stdout] | [INFO] [stdout] 27 | IP: f64, [INFO] [stdout] | ^^ help: convert the identifier to snake case: `ip` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `P` should have a snake case name [INFO] [stdout] --> src/cdr3/cdr3.rs:249:13 [INFO] [stdout] | [INFO] [stdout] 249 | let mut P = ProteinAnalysis::new(sequence); [INFO] [stdout] | ^ help: convert the identifier to snake case: `p` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `IP` should have a snake case name [INFO] [stdout] --> src/cdr3/cdr3.rs:250:13 [INFO] [stdout] | [INFO] [stdout] 250 | let mut IP = IsoelectricPoint::new(sequence, None); [INFO] [stdout] | ^^ help: convert the identifier to snake case: `ip` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/cdr3/cdr3.rs:294:5 [INFO] [stdout] | [INFO] [stdout] 294 | write_cdr3_header(); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/cdr3/cdr3.rs:296:9 [INFO] [stdout] | [INFO] [stdout] 296 | write_cdr3_attributes(s); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `pos_pKs` should have a snake case name [INFO] [stdout] --> src/cdr3/isoelectric_point.rs:95:5 [INFO] [stdout] | [INFO] [stdout] 95 | pos_pKs: HashMap, [INFO] [stdout] | ^^^^^^^ help: convert the identifier to snake case: `pos_p_ks` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `neg_pKs` should have a snake case name [INFO] [stdout] --> src/cdr3/isoelectric_point.rs:96:5 [INFO] [stdout] | [INFO] [stdout] 96 | neg_pKs: HashMap, [INFO] [stdout] | ^^^^^^^ help: convert the identifier to snake case: `neg_p_ks` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `charge_at_pH` should have a snake case name [INFO] [stdout] --> src/cdr3/isoelectric_point.rs:99:9 [INFO] [stdout] | [INFO] [stdout] 99 | pub charge_at_pH: Option, [INFO] [stdout] | ^^^^^^^^^^^^ help: convert the identifier to snake case: `charge_at_p_h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `pH` should have a snake case name [INFO] [stdout] --> src/cdr3/isoelectric_point.rs:103:32 [INFO] [stdout] | [INFO] [stdout] 103 | pub fn new(sequence: &str, pH: Option) -> Self { [INFO] [stdout] | ^^ help: convert the identifier to snake case: `p_h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `pK_table` should have a snake case name [INFO] [stdout] --> src/cdr3/isoelectric_point.rs:132:8 [INFO] [stdout] | [INFO] [stdout] 132 | fn pK_table(&mut self) -> (HashMap, HashMap) { [INFO] [stdout] | ^^^^^^^^ help: convert the identifier to snake case: `p_k_table` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `pos_pKs` should have a snake case name [INFO] [stdout] --> src/cdr3/isoelectric_point.rs:134:21 [INFO] [stdout] | [INFO] [stdout] 134 | let mut pos_pKs: HashMap = POSITIVE_PKS.clone(); [INFO] [stdout] | ^^^^^^^ help: convert the identifier to snake case: `pos_p_ks` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `neg_pKs` should have a snake case name [INFO] [stdout] --> src/cdr3/isoelectric_point.rs:135:21 [INFO] [stdout] | [INFO] [stdout] 135 | let mut neg_pKs: HashMap = NEGATIVE_PKS.clone(); [INFO] [stdout] | ^^^^^^^ help: convert the identifier to snake case: `neg_p_ks` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `pKnterminal` should have a snake case name [INFO] [stdout] --> src/cdr3/isoelectric_point.rs:149:21 [INFO] [stdout] | [INFO] [stdout] 149 | let mut pKnterminal = PKNTERMINAL.clone(); [INFO] [stdout] | ^^^^^^^^^^^ help: convert the identifier to snake case: `p_knterminal` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `pKcterminal` should have a snake case name [INFO] [stdout] --> src/cdr3/isoelectric_point.rs:150:21 [INFO] [stdout] | [INFO] [stdout] 150 | let mut pKcterminal = PKCTERMINAL.clone(); [INFO] [stdout] | ^^^^^^^^^^^ help: convert the identifier to snake case: `p_kcterminal` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `charge_at_pH` should have a snake case name [INFO] [stdout] --> src/cdr3/isoelectric_point.rs:177:12 [INFO] [stdout] | [INFO] [stdout] 177 | pub fn charge_at_pH(&mut self, mut pH: Option) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^^ help: convert the identifier to snake case: `charge_at_p_h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `pH` should have a snake case name [INFO] [stdout] --> src/cdr3/isoelectric_point.rs:177:40 [INFO] [stdout] | [INFO] [stdout] 177 | pub fn charge_at_pH(&mut self, mut pH: Option) -> f64 { [INFO] [stdout] | ^^ help: convert the identifier to snake case: `p_h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `pK` should have a snake case name [INFO] [stdout] --> src/cdr3/isoelectric_point.rs:184:22 [INFO] [stdout] | [INFO] [stdout] 184 | for (aa, pK) in &self.pos_pKs { [INFO] [stdout] | ^^ help: convert the identifier to snake case: `p_k` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `pK` should have a snake case name [INFO] [stdout] --> src/cdr3/isoelectric_point.rs:195:22 [INFO] [stdout] | [INFO] [stdout] 195 | for (aa, pK) in &self.neg_pKs { [INFO] [stdout] | ^^ help: convert the identifier to snake case: `p_k` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `pH` should have a snake case name [INFO] [stdout] --> src/cdr3/isoelectric_point.rs:211:30 [INFO] [stdout] | [INFO] [stdout] 211 | pub fn pi(&mut self, mut pH: Option, mut min_: Option, mut max_: Option) -> f64 { [INFO] [stdout] | ^^ help: convert the identifier to snake case: `p_h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `H` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:68:13 [INFO] [stdout] | [INFO] [stdout] 68 | let H: HashMap> = [INFO] [stdout] | ^ help: convert the identifier to snake case: `h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `charge_at_pH` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:205:9 [INFO] [stdout] | [INFO] [stdout] 205 | pub charge_at_pH: Option, [INFO] [stdout] | ^^^^^^^^^^^^ help: convert the identifier to snake case: `charge_at_p_h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `PA` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:212:17 [INFO] [stdout] | [INFO] [stdout] 212 | let mut PA = ProteinAnalysis { [INFO] [stdout] | ^^ help: convert the identifier to snake case: `pa` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `IP` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:217:17 [INFO] [stdout] | [INFO] [stdout] 217 | let mut IP = IsoelectricPoint::new(sequence, None); [INFO] [stdout] | ^^ help: convert the identifier to snake case: `ip` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `IP` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:352:41 [INFO] [stdout] | [INFO] [stdout] 352 | pub fn isoelectric_point(&mut self, IP: &mut IsoelectricPoint) -> f64 { [INFO] [stdout] | ^^ help: convert the identifier to snake case: `ip` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `charge_at_pH` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:359:12 [INFO] [stdout] | [INFO] [stdout] 359 | pub fn charge_at_pH(&mut self, IP: &mut IsoelectricPoint) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^^ help: convert the identifier to snake case: `charge_at_p_h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `IP` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:359:36 [INFO] [stdout] | [INFO] [stdout] 359 | pub fn charge_at_pH(&mut self, IP: &mut IsoelectricPoint) -> f64 { [INFO] [stdout] | ^^ help: convert the identifier to snake case: `ip` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/main.rs:102:5 [INFO] [stdout] | [INFO] [stdout] 102 | pipeline_cdr3(input_file); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_must_use)]` on by default [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `MW` should have a snake case name [INFO] [stdout] --> src/cdr3/cdr3.rs:25:9 [INFO] [stdout] | [INFO] [stdout] 25 | pub MW: f64, [INFO] [stdout] | ^^ help: convert the identifier to snake case: `mw` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_snake_case)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `AV` should have a snake case name [INFO] [stdout] --> src/cdr3/cdr3.rs:26:9 [INFO] [stdout] | [INFO] [stdout] 26 | pub AV: f64, [INFO] [stdout] | ^^ help: convert the identifier to snake case: `av` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `IP` should have a snake case name [INFO] [stdout] --> src/cdr3/cdr3.rs:27:5 [INFO] [stdout] | [INFO] [stdout] 27 | IP: f64, [INFO] [stdout] | ^^ help: convert the identifier to snake case: `ip` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `P` should have a snake case name [INFO] [stdout] --> src/cdr3/cdr3.rs:249:13 [INFO] [stdout] | [INFO] [stdout] 249 | let mut P = ProteinAnalysis::new(sequence); [INFO] [stdout] | ^ help: convert the identifier to snake case: `p` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `IP` should have a snake case name [INFO] [stdout] --> src/cdr3/cdr3.rs:250:13 [INFO] [stdout] | [INFO] [stdout] 250 | let mut IP = IsoelectricPoint::new(sequence, None); [INFO] [stdout] | ^^ help: convert the identifier to snake case: `ip` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/cdr3/cdr3.rs:294:5 [INFO] [stdout] | [INFO] [stdout] 294 | write_cdr3_header(); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/cdr3/cdr3.rs:296:9 [INFO] [stdout] | [INFO] [stdout] 296 | write_cdr3_attributes(s); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `pos_pKs` should have a snake case name [INFO] [stdout] --> src/cdr3/isoelectric_point.rs:95:5 [INFO] [stdout] | [INFO] [stdout] 95 | pos_pKs: HashMap, [INFO] [stdout] | ^^^^^^^ help: convert the identifier to snake case: `pos_p_ks` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `neg_pKs` should have a snake case name [INFO] [stdout] --> src/cdr3/isoelectric_point.rs:96:5 [INFO] [stdout] | [INFO] [stdout] 96 | neg_pKs: HashMap, [INFO] [stdout] | ^^^^^^^ help: convert the identifier to snake case: `neg_p_ks` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `charge_at_pH` should have a snake case name [INFO] [stdout] --> src/cdr3/isoelectric_point.rs:99:9 [INFO] [stdout] | [INFO] [stdout] 99 | pub charge_at_pH: Option, [INFO] [stdout] | ^^^^^^^^^^^^ help: convert the identifier to snake case: `charge_at_p_h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `pH` should have a snake case name [INFO] [stdout] --> src/cdr3/isoelectric_point.rs:103:32 [INFO] [stdout] | [INFO] [stdout] 103 | pub fn new(sequence: &str, pH: Option) -> Self { [INFO] [stdout] | ^^ help: convert the identifier to snake case: `p_h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `pK_table` should have a snake case name [INFO] [stdout] --> src/cdr3/isoelectric_point.rs:132:8 [INFO] [stdout] | [INFO] [stdout] 132 | fn pK_table(&mut self) -> (HashMap, HashMap) { [INFO] [stdout] | ^^^^^^^^ help: convert the identifier to snake case: `p_k_table` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `pos_pKs` should have a snake case name [INFO] [stdout] --> src/cdr3/isoelectric_point.rs:134:21 [INFO] [stdout] | [INFO] [stdout] 134 | let mut pos_pKs: HashMap = POSITIVE_PKS.clone(); [INFO] [stdout] | ^^^^^^^ help: convert the identifier to snake case: `pos_p_ks` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `neg_pKs` should have a snake case name [INFO] [stdout] --> src/cdr3/isoelectric_point.rs:135:21 [INFO] [stdout] | [INFO] [stdout] 135 | let mut neg_pKs: HashMap = NEGATIVE_PKS.clone(); [INFO] [stdout] | ^^^^^^^ help: convert the identifier to snake case: `neg_p_ks` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `pKnterminal` should have a snake case name [INFO] [stdout] --> src/cdr3/isoelectric_point.rs:149:21 [INFO] [stdout] | [INFO] [stdout] 149 | let mut pKnterminal = PKNTERMINAL.clone(); [INFO] [stdout] | ^^^^^^^^^^^ help: convert the identifier to snake case: `p_knterminal` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `pKcterminal` should have a snake case name [INFO] [stdout] --> src/cdr3/isoelectric_point.rs:150:21 [INFO] [stdout] | [INFO] [stdout] 150 | let mut pKcterminal = PKCTERMINAL.clone(); [INFO] [stdout] | ^^^^^^^^^^^ help: convert the identifier to snake case: `p_kcterminal` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `charge_at_pH` should have a snake case name [INFO] [stdout] --> src/cdr3/isoelectric_point.rs:177:12 [INFO] [stdout] | [INFO] [stdout] 177 | pub fn charge_at_pH(&mut self, mut pH: Option) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^^ help: convert the identifier to snake case: `charge_at_p_h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `pH` should have a snake case name [INFO] [stdout] --> src/cdr3/isoelectric_point.rs:177:40 [INFO] [stdout] | [INFO] [stdout] 177 | pub fn charge_at_pH(&mut self, mut pH: Option) -> f64 { [INFO] [stdout] | ^^ help: convert the identifier to snake case: `p_h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `pK` should have a snake case name [INFO] [stdout] --> src/cdr3/isoelectric_point.rs:184:22 [INFO] [stdout] | [INFO] [stdout] 184 | for (aa, pK) in &self.pos_pKs { [INFO] [stdout] | ^^ help: convert the identifier to snake case: `p_k` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `pK` should have a snake case name [INFO] [stdout] --> src/cdr3/isoelectric_point.rs:195:22 [INFO] [stdout] | [INFO] [stdout] 195 | for (aa, pK) in &self.neg_pKs { [INFO] [stdout] | ^^ help: convert the identifier to snake case: `p_k` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `pH` should have a snake case name [INFO] [stdout] --> src/cdr3/isoelectric_point.rs:211:30 [INFO] [stdout] | [INFO] [stdout] 211 | pub fn pi(&mut self, mut pH: Option, mut min_: Option, mut max_: Option) -> f64 { [INFO] [stdout] | ^^ help: convert the identifier to snake case: `p_h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `H` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:68:13 [INFO] [stdout] | [INFO] [stdout] 68 | let H: HashMap> = [INFO] [stdout] | ^ help: convert the identifier to snake case: `h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `charge_at_pH` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:205:9 [INFO] [stdout] | [INFO] [stdout] 205 | pub charge_at_pH: Option, [INFO] [stdout] | ^^^^^^^^^^^^ help: convert the identifier to snake case: `charge_at_p_h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `PA` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:212:17 [INFO] [stdout] | [INFO] [stdout] 212 | let mut PA = ProteinAnalysis { [INFO] [stdout] | ^^ help: convert the identifier to snake case: `pa` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `IP` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:217:17 [INFO] [stdout] | [INFO] [stdout] 217 | let mut IP = IsoelectricPoint::new(sequence, None); [INFO] [stdout] | ^^ help: convert the identifier to snake case: `ip` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `IP` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:352:41 [INFO] [stdout] | [INFO] [stdout] 352 | pub fn isoelectric_point(&mut self, IP: &mut IsoelectricPoint) -> f64 { [INFO] [stdout] | ^^ help: convert the identifier to snake case: `ip` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `charge_at_pH` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:359:12 [INFO] [stdout] | [INFO] [stdout] 359 | pub fn charge_at_pH(&mut self, IP: &mut IsoelectricPoint) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^^ help: convert the identifier to snake case: `charge_at_p_h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `IP` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:359:36 [INFO] [stdout] | [INFO] [stdout] 359 | pub fn charge_at_pH(&mut self, IP: &mut IsoelectricPoint) -> f64 { [INFO] [stdout] | ^^ help: convert the identifier to snake case: `ip` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 65 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 65 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 1m 58s [INFO] running `Command { std: "docker" "inspect" "86f0fbdc2d4632f810845724f14d66f094f9805f23ba8f4f4674236bd9caff39", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "86f0fbdc2d4632f810845724f14d66f094f9805f23ba8f4f4674236bd9caff39", kill_on_drop: false }` [INFO] [stdout] 86f0fbdc2d4632f810845724f14d66f094f9805f23ba8f4f4674236bd9caff39