[INFO] fetching crate rust-bio-tools 0.26.1...
[INFO] checking rust-bio-tools-0.26.1 against try#a7a572ce3edd6d476191fbfe92c9c1986e009b34 for pr-87190-3
[INFO] extracting crate rust-bio-tools 0.26.1 into /workspace/builds/worker-91/source
[INFO] validating manifest of crates.io crate rust-bio-tools 0.26.1 on toolchain a7a572ce3edd6d476191fbfe92c9c1986e009b34
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a7a572ce3edd6d476191fbfe92c9c1986e009b34" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] removed /workspace/builds/worker-91/source/.cargo/config
[INFO] started tweaking crates.io crate rust-bio-tools 0.26.1
[INFO] finished tweaking crates.io crate rust-bio-tools 0.26.1
[INFO] tweaked toml for crates.io crate rust-bio-tools 0.26.1 written to /workspace/builds/worker-91/source/Cargo.toml
[INFO] crate crates.io crate rust-bio-tools 0.26.1 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a7a572ce3edd6d476191fbfe92c9c1986e009b34" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded streaming-stats v0.2.3
[INFO] [stderr]   Downloaded feature-probe v0.1.1
[INFO] [stderr]   Downloaded getset v0.0.9
[INFO] [stderr]   Downloaded statrs v0.12.0
[INFO] [stderr]   Downloaded rust-htslib v0.36.0
[INFO] [stderr]   Downloaded c_vec v1.0.12
[INFO] [stderr]   Downloaded rocksdb v0.17.0
[INFO] [stderr]   Downloaded humansize v1.1.1
[INFO] [stderr]   Downloaded backtrace v0.3.59
[INFO] [stderr]   Downloaded itertools-num v0.1.3
[INFO] [stderr]   Downloaded tera v1.12.1
[INFO] [stderr]   Downloaded object v0.24.0
[INFO] [stderr]   Downloaded jsonm v0.1.4
[INFO] [stderr]   Downloaded bv v0.11.1
[INFO] [stderr]   Downloaded lz-str v0.1.0
[INFO] [stderr]   Downloaded xlsxwriter v0.3.5
[INFO] [stderr]   Downloaded GSL v1.1.0
[INFO] [stderr]   Downloaded bindgen v0.58.1
[INFO] [stderr]   Downloaded httparse v1.5.0
[INFO] [stderr]   Downloaded bio v0.32.0
[INFO] [stderr]   Downloaded derefable v0.1.0
[INFO] [stderr]   Downloaded triple_accel v0.3.4
[INFO] [stderr]   Downloaded libxlsxwriter-sys v1.1.1
[INFO] [stderr]   Downloaded hts-sys v1.11.1-fix2
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-91/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-91/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+a7a572ce3edd6d476191fbfe92c9c1986e009b34" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] b43fbcbcaa5e7b803811bddfc9484cff04b31a18ffec44847fa72125b45516b0
[INFO] running `Command { std: "docker" "start" "-a" "b43fbcbcaa5e7b803811bddfc9484cff04b31a18ffec44847fa72125b45516b0", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "b43fbcbcaa5e7b803811bddfc9484cff04b31a18ffec44847fa72125b45516b0", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "b43fbcbcaa5e7b803811bddfc9484cff04b31a18ffec44847fa72125b45516b0", kill_on_drop: false }`
[INFO] [stdout] b43fbcbcaa5e7b803811bddfc9484cff04b31a18ffec44847fa72125b45516b0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-91/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-91/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+a7a572ce3edd6d476191fbfe92c9c1986e009b34" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 85c818ae43b6ac090b8a8fb8e367fbb696b3007e5f31a78588b4f83355e4f7f3
[INFO] running `Command { std: "docker" "start" "-a" "85c818ae43b6ac090b8a8fb8e367fbb696b3007e5f31a78588b4f83355e4f7f3", kill_on_drop: false }`
[INFO] [stderr] Copying to /tmp/fixit
[INFO] [stderr] Running `cargo fix --edition`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr] note: Switching to Edition 2021 will enable the use of the version 2 feature resolver in Cargo.
[INFO] [stderr] This may cause some dependencies to be built with fewer features enabled than previously.
[INFO] [stderr] More information about the resolver changes may be found at https://doc.rust-lang.org/nightly/edition-guide/rust-2021/default-cargo-resolver.html
[INFO] [stderr] When building the following dependencies, the given features will no longer be used:
[INFO] [stderr] 
[INFO] [stderr]   byteorder v1.4.3 (as host dependency): default, std
[INFO] [stderr]   clap v2.33.3 (as host dependency): yaml, yaml-rust
[INFO] [stderr]   regex v1.4.6 (as host dependency): default
[INFO] [stderr]   regex-syntax v0.6.25 (as host dependency): default
[INFO] [stderr]   vec_map v0.8.2 (as host dependency): eders, serde
[INFO] [stderr] 
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]    Compiling libc v0.2.99
[INFO] [stderr]    Compiling autocfg v1.0.1
[INFO] [stderr]    Compiling syn v1.0.74
[INFO] [stderr]    Compiling memchr v2.3.4
[INFO] [stderr]    Compiling version_check v0.9.3
[INFO] [stderr]     Checking lazy_static v1.4.0
[INFO] [stderr]    Compiling serde_derive v1.0.127
[INFO] [stderr]    Compiling serde v1.0.127
[INFO] [stderr]    Compiling pkg-config v0.3.19
[INFO] [stderr]     Checking cfg-if v0.1.10
[INFO] [stderr]    Compiling glob v0.3.0
[INFO] [stderr]     Checking scopeguard v1.1.0
[INFO] [stderr]     Checking futures v0.1.31
[INFO] [stderr]    Compiling regex-syntax v0.6.25
[INFO] [stderr]     Checking either v1.6.1
[INFO] [stderr]     Checking byteorder v1.4.3
[INFO] [stderr]    Compiling semver-parser v0.7.0
[INFO] [stderr]     Checking fnv v1.0.7
[INFO] [stderr]    Compiling maybe-uninit v2.0.0
[INFO] [stderr]    Compiling cfg-if v1.0.0
[INFO] [stderr]     Checking itoa v0.4.7
[INFO] [stderr]     Checking tinyvec_macros v0.1.0
[INFO] [stderr]    Compiling bitflags v1.3.2
[INFO] [stderr]    Compiling autocfg v0.1.7
[INFO] [stderr]     Checking hashbrown v0.11.2
[INFO] [stderr]     Checking rand_core v0.4.2
[INFO] [stderr]     Checking matches v0.1.9
[INFO] [stderr]     Checking slab v0.4.4
[INFO] [stderr]     Checking unicode-bidi v0.3.6
[INFO] [stderr]    Compiling peeking_take_while v0.1.2
[INFO] [stderr]    Compiling radium v0.5.3
[INFO] [stderr]    Compiling rustc-hash v1.1.0
[INFO] [stderr]    Compiling crossbeam-utils v0.8.5
[INFO] [stderr]    Compiling shlex v1.0.0
[INFO] [stderr]    Compiling lazycell v1.3.0
[INFO] [stderr]    Compiling ryu v1.0.5
[INFO] [stderr]    Compiling tap v1.0.1
[INFO] [stderr]    Compiling unicode-segmentation v1.8.0
[INFO] [stderr]    Compiling funty v1.1.0
[INFO] [stderr]    Compiling wyz v0.2.0
[INFO] [stderr]     Checking once_cell v1.8.0
[INFO] [stderr]     Checking regex-automata v0.1.10
[INFO] [stderr]     Checking percent-encoding v2.1.0
[INFO] [stderr]    Compiling unicode-width v0.1.8
[INFO] [stderr]     Checking adler v1.0.2
[INFO] [stderr]    Compiling yaml-rust v0.3.5
[INFO] [stderr]    Compiling strsim v0.8.0
[INFO] [stderr]    Compiling humantime v2.1.0
[INFO] [stderr]    Compiling serde_json v1.0.66
[INFO] [stderr]    Compiling proc-macro2 v0.4.30
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling termcolor v1.1.2
[INFO] [stderr]    Compiling ansi_term v0.11.0
[INFO] [stderr]    Compiling bindgen v0.59.1
[INFO] [stderr]    Compiling bindgen v0.58.1
[INFO] [stderr]    Compiling failure_derive v0.1.8
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling crossbeam-epoch v0.9.5
[INFO] [stderr]     Checking percent-encoding v1.0.1
[INFO] [stderr]    Compiling ucd-trie v0.1.3
[INFO] [stderr]    Compiling unicode-xid v0.1.0
[INFO] [stderr]     Checking gimli v0.24.0
[INFO] [stderr]    Compiling openssl v0.10.36
[INFO] [stderr]    Compiling httparse v1.5.0
[INFO] [stderr]     Checking foreign-types-shared v0.1.1
[INFO] [stderr]    Compiling native-tls v0.2.8
[INFO] [stderr]     Checking object v0.24.0
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]     Checking try-lock v0.2.3
[INFO] [stderr]    Compiling rayon-core v1.9.1
[INFO] [stderr]     Checking unic-char-range v0.9.0
[INFO] [stderr]    Compiling crc32fast v1.2.1
[INFO] [stderr]     Checking same-file v1.0.6
[INFO] [stderr]    Compiling syn v0.15.44
[INFO] [stderr]     Checking rustc-demangle v0.1.20
[INFO] [stderr]     Checking unic-common v0.9.0
[INFO] [stderr]    Compiling doc-comment v0.3.3
[INFO] [stderr]    Compiling maplit v1.0.2
[INFO] [stderr]    Compiling encoding_rs v0.8.28
[INFO] [stderr]     Checking rawpointer v0.2.1
[INFO] [stderr]     Checking openssl-probe v0.1.4
[INFO] [stderr]     Checking smallvec v1.6.1
[INFO] [stderr]    Compiling ndarray v0.13.1
[INFO] [stderr]    Compiling anyhow v1.0.43
[INFO] [stderr]     Checking array-macro v1.0.5
[INFO] [stderr]    Compiling bio v0.32.0
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking mime v0.3.16
[INFO] [stderr]     Checking fixedbitset v0.2.0
[INFO] [stderr]     Checking dtoa v0.4.8
[INFO] [stderr]     Checking deunicode v0.4.3
[INFO] [stderr]     Checking bit-vec v0.6.3
[INFO] [stderr]     Checking void v1.0.2
[INFO] [stderr]     Checking linear-map v1.2.0
[INFO] [stderr]     Checking strum v0.18.0
[INFO] [stderr]     Checking bytecount v0.6.2
[INFO] [stderr]     Checking ieee754 v0.2.6
[INFO] [stderr]     Checking remove_dir_all v0.5.3
[INFO] [stderr]     Checking c_vec v1.0.12
[INFO] [stderr]     Checking triple_accel v0.3.4
[INFO] [stderr]     Checking humansize v1.1.1
[INFO] [stderr]     Checking rustc-serialize v0.3.24
[INFO] [stderr]     Checking lz-str v0.1.0
[INFO] [stderr]    Compiling semver v0.9.0
[INFO] [stderr]     Checking tinyvec v1.3.1
[INFO] [stderr]    Compiling libloading v0.7.0
[INFO] [stderr]     Checking lock_api v0.3.4
[INFO] [stderr]    Compiling textwrap v0.11.0
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]     Checking instant v0.1.10
[INFO] [stderr]     Checking lock_api v0.4.4
[INFO] [stderr]     Checking try_from v0.3.2
[INFO] [stderr]     Checking itertools v0.9.0
[INFO] [stderr]     Checking rand_core v0.3.1
[INFO] [stderr]    Compiling log v0.4.14
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]     Checking form_urlencoded v1.0.1
[INFO] [stderr]     Checking foreign-types v0.3.2
[INFO] [stderr]    Compiling pest v2.1.3
[INFO] [stderr]     Checking thread_local v1.1.3
[INFO] [stderr]     Checking rand_jitter v0.1.4
[INFO] [stderr]     Checking matrixmultiply v0.2.4
[INFO] [stderr]     Checking base64 v0.10.1
[INFO] [stderr]     Checking fxhash v0.2.1
[INFO] [stderr] error: could not compile `regex-syntax`
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `rustc --crate-name regex_syntax --edition=2018 /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/regex-syntax-0.6.25/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no -C debuginfo=2 --cfg 'feature="default"' --cfg 'feature="unicode"' --cfg 'feature="unicode-age"' --cfg 'feature="unicode-bool"' --cfg 'feature="unicode-case"' --cfg 'feature="unicode-gencat"' --cfg 'feature="unicode-perl"' --cfg 'feature="unicode-script"' --cfg 'feature="unicode-segment"' -C metadata=c25dc19d7487cdf7 -C extra-filename=-c25dc19d7487cdf7 --out-dir /opt/rustwide/target/debug/deps -L dependency=/opt/rustwide/target/debug/deps --cap-lints allow --cap-lints=forbid` (signal: 9, SIGKILL: kill)
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] [stderr] error: build failed
[INFO] [stderr] error: failed to migrate to next edition
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `cargo fix --edition --allow-no-vcs --allow-dirty --frozen --all --all-targets --message-format=json` (exit status: 101)
[INFO] running `Command { std: "docker" "inspect" "85c818ae43b6ac090b8a8fb8e367fbb696b3007e5f31a78588b4f83355e4f7f3", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "85c818ae43b6ac090b8a8fb8e367fbb696b3007e5f31a78588b4f83355e4f7f3", kill_on_drop: false }`
[INFO] [stdout] 85c818ae43b6ac090b8a8fb8e367fbb696b3007e5f31a78588b4f83355e4f7f3