[INFO] fetching crate omics-tools 0.1.0...
[INFO] checking omics-tools-0.1.0 against try#a7a572ce3edd6d476191fbfe92c9c1986e009b34 for pr-87190-3
[INFO] extracting crate omics-tools 0.1.0 into /workspace/builds/worker-1/source
[INFO] validating manifest of crates.io crate omics-tools 0.1.0 on toolchain a7a572ce3edd6d476191fbfe92c9c1986e009b34
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a7a572ce3edd6d476191fbfe92c9c1986e009b34" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate omics-tools 0.1.0
[INFO] finished tweaking crates.io crate omics-tools 0.1.0
[INFO] tweaked toml for crates.io crate omics-tools 0.1.0 written to /workspace/builds/worker-1/source/Cargo.toml
[INFO] crate crates.io crate omics-tools 0.1.0 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a7a572ce3edd6d476191fbfe92c9c1986e009b34" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded openssl-src v111.10.2+1.1.1g
[INFO] [stderr]   Downloaded rust-htslib v0.32.0
[INFO] [stderr]   Downloaded hts-sys v1.10.3
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+a7a572ce3edd6d476191fbfe92c9c1986e009b34" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 9e6ed087266db588910a564cee98057b55a8ae830bb96fc6dfee4ca1fa5ea572
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "9e6ed087266db588910a564cee98057b55a8ae830bb96fc6dfee4ca1fa5ea572", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "9e6ed087266db588910a564cee98057b55a8ae830bb96fc6dfee4ca1fa5ea572", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "9e6ed087266db588910a564cee98057b55a8ae830bb96fc6dfee4ca1fa5ea572", kill_on_drop: false }`
[INFO] [stdout] 9e6ed087266db588910a564cee98057b55a8ae830bb96fc6dfee4ca1fa5ea572
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+a7a572ce3edd6d476191fbfe92c9c1986e009b34" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 9c7b8478c63184c1c25145a32e68b60f422ab70b0e3985630ed4dbd254c8f630
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "9c7b8478c63184c1c25145a32e68b60f422ab70b0e3985630ed4dbd254c8f630", kill_on_drop: false }`
[INFO] [stderr] Copying to /tmp/fixit
[INFO] [stderr] Running `cargo fix --edition`
[INFO] [stderr]    Compiling libc v0.2.77
[INFO] [stderr]    Compiling autocfg v1.0.1
[INFO] [stderr]    Compiling pkg-config v0.3.18
[INFO] [stderr]    Compiling unicode-xid v0.2.1
[INFO] [stderr]     Checking lazy_static v1.4.0
[INFO] [stderr]    Compiling syn v1.0.40
[INFO] [stderr]    Compiling version_check v0.9.2
[INFO] [stderr]     Checking cfg-if v0.1.10
[INFO] [stderr]    Compiling maybe-uninit v2.0.0
[INFO] [stderr]    Compiling memchr v2.3.3
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]     Checking matches v0.1.8
[INFO] [stderr]     Checking tinyvec v0.3.4
[INFO] [stderr]    Compiling bitflags v1.2.1
[INFO] [stderr]    Compiling serde_derive v1.0.116
[INFO] [stderr]    Compiling rayon-core v1.8.0
[INFO] [stderr]    Compiling glob v0.3.0
[INFO] [stderr]    Compiling log v0.4.11
[INFO] [stderr]     Checking void v1.0.2
[INFO] [stderr]    Compiling unicode-segmentation v1.6.0
[INFO] [stderr]     Checking lazy_static v0.2.11
[INFO] [stderr]     Checking percent-encoding v2.1.0
[INFO] [stderr]     Checking either v1.6.0
[INFO] [stderr]     Checking linear-map v1.2.0
[INFO] [stderr]     Checking termcolor v1.1.0
[INFO] [stderr]     Checking ieee754 v0.2.6
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking exitcode v1.1.2
[INFO] [stderr]     Checking thread_local v1.0.1
[INFO] [stderr]     Checking unicode-bidi v0.3.4
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]     Checking unreachable v1.0.0
[INFO] [stderr]     Checking unicode-normalization v0.1.13
[INFO] [stderr]    Compiling proc-macro2 v1.0.21
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking thread_local v0.3.4
[INFO] [stderr]    Compiling heck v0.3.1
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling crossbeam-utils v0.7.2
[INFO] [stderr]    Compiling memoffset v0.5.5
[INFO] [stderr]    Compiling crossbeam-epoch v0.8.2
[INFO] [stderr]    Compiling num-traits v0.2.12
[INFO] [stderr]    Compiling num-integer v0.1.43
[INFO] [stderr]    Compiling rayon v1.4.0
[INFO] [stderr]     Checking aho-corasick v0.7.13
[INFO] [stderr]    Compiling quote v1.0.7
[INFO] [stderr]     Checking atty v0.2.11
[INFO] [stderr]     Checking time v0.1.44
[INFO] [stderr]     Checking num_cpus v1.13.0
[INFO] [stderr]     Checking clap v2.33.3
[INFO] [stderr]    Compiling jobserver v0.1.21
[INFO] [stderr]     Checking idna v0.2.0
[INFO] [stderr]     Checking crossbeam-channel v0.4.4
[INFO] [stderr]    Compiling cc v1.0.59
[INFO] [stderr]     Checking regex v1.3.9
[INFO] [stderr]     Checking crossbeam-deque v0.7.3
[INFO] [stderr]     Checking url v2.1.1
[INFO] [stderr]    Compiling openssl-src v111.10.2+1.1.1g
[INFO] [stderr]     Checking chrono v0.4.15
[INFO] [stderr]    Compiling libz-sys v1.1.2
[INFO] [stderr]    Compiling openssl-sys v0.9.58
[INFO] [stderr]    Compiling bzip2-sys v0.1.9+1.0.8
[INFO] [stderr]    Compiling lzma-sys v0.1.16
[INFO] [stderr]    Compiling curl-sys v0.4.36+curl-7.71.1
[INFO] [stderr]    Compiling hts-sys v1.10.3
[INFO] [stderr]     Checking stderrlog v0.4.3
[INFO] [stderr]    Compiling derive-new v0.5.8
[INFO] [stderr]    Compiling thiserror-impl v1.0.20
[INFO] [stderr]    Compiling structopt-derive v0.4.10
[INFO] [stderr]     Checking thiserror v1.0.20
[INFO] [stderr]     Checking structopt v0.3.17
[INFO] [stderr]     Checking bio-types v0.7.0
[INFO] [stderr]     Checking rust-htslib v0.32.0
[INFO] [stderr]     Checking omics-tools v0.1.0 (/tmp/fixit)
[INFO] [stderr]    Migrating src/lib.rs from 2018 edition to 2021
[INFO] [stderr]    Migrating src/bin/bam-util.rs from 2018 edition to 2021
[INFO] [stdout] warning: unused `#[macro_use]` import
[INFO] [stdout]  --> src/bin/bam-util.rs:1:1
[INFO] [stdout]   |
[INFO] [stdout] 1 | #[macro_use]
[INFO] [stdout]   | ^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 1 warning emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `#[macro_use]` import
[INFO] [stdout]  --> src/bin/bam-util.rs:1:1
[INFO] [stdout]   |
[INFO] [stdout] 1 | #[macro_use]
[INFO] [stdout]   | ^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 1 warning emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 1m 53s
[INFO] [stderr] Running `cargo check` to verify 2021
[INFO] [stderr]     Checking omics-tools v0.1.0 (/tmp/fixit)
[INFO] [stdout] warning: unused `#[macro_use]` import
[INFO] [stdout]  --> src/bin/bam-util.rs:1:1
[INFO] [stdout]   |
[INFO] [stdout] 1 | #[macro_use]
[INFO] [stdout]   | ^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `#[macro_use]` import
[INFO] [stdout]  --> src/bin/bam-util.rs:1:1
[INFO] [stdout]   |
[INFO] [stdout] 1 | #[macro_use]
[INFO] [stdout]   | ^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 1 warning emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 1 warning emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 0.80s
[INFO] running `Command { std: "docker" "inspect" "9c7b8478c63184c1c25145a32e68b60f422ab70b0e3985630ed4dbd254c8f630", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "9c7b8478c63184c1c25145a32e68b60f422ab70b0e3985630ed4dbd254c8f630", kill_on_drop: false }`
[INFO] [stdout] 9c7b8478c63184c1c25145a32e68b60f422ab70b0e3985630ed4dbd254c8f630