[INFO] fetching crate netcdf 0.6.1... [INFO] checking netcdf-0.6.1 against try#a7a572ce3edd6d476191fbfe92c9c1986e009b34 for pr-87190-3 [INFO] extracting crate netcdf 0.6.1 into /workspace/builds/worker-15/source [INFO] validating manifest of crates.io crate netcdf 0.6.1 on toolchain a7a572ce3edd6d476191fbfe92c9c1986e009b34 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a7a572ce3edd6d476191fbfe92c9c1986e009b34" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate netcdf 0.6.1 [INFO] finished tweaking crates.io crate netcdf 0.6.1 [INFO] tweaked toml for crates.io crate netcdf 0.6.1 written to /workspace/builds/worker-15/source/Cargo.toml [INFO] crate crates.io crate netcdf 0.6.1 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a7a572ce3edd6d476191fbfe92c9c1986e009b34" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded thread_local v1.1.2 [INFO] [stderr] Downloaded rand_core v0.6.1 [INFO] [stderr] Downloaded libc v0.2.84 [INFO] [stderr] Downloaded libz-sys v1.1.2 [INFO] [stderr] Downloaded netcdf-sys v0.3.4 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-15/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-15/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+a7a572ce3edd6d476191fbfe92c9c1986e009b34" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] d6f1baa3f7f4a51ba8308037d6c0fc7870762854813ac8c2cfd7cf0382df00fd [INFO] running `Command { std: "docker" "start" "-a" "d6f1baa3f7f4a51ba8308037d6c0fc7870762854813ac8c2cfd7cf0382df00fd", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "d6f1baa3f7f4a51ba8308037d6c0fc7870762854813ac8c2cfd7cf0382df00fd", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "d6f1baa3f7f4a51ba8308037d6c0fc7870762854813ac8c2cfd7cf0382df00fd", kill_on_drop: false }` [INFO] [stdout] d6f1baa3f7f4a51ba8308037d6c0fc7870762854813ac8c2cfd7cf0382df00fd [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-15/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-15/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+a7a572ce3edd6d476191fbfe92c9c1986e009b34" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 814f1753498665d6117e3939f47a11e8701f4ec39c4bdfbfee3f908a396ff4ea [INFO] running `Command { std: "docker" "start" "-a" "814f1753498665d6117e3939f47a11e8701f4ec39c4bdfbfee3f908a396ff4ea", kill_on_drop: false }` [INFO] [stderr] Copying to /tmp/fixit [INFO] [stderr] Running `cargo fix --edition` [INFO] [stderr] Compiling libc v0.2.84 [INFO] [stderr] Compiling autocfg v1.0.1 [INFO] [stderr] Compiling pkg-config v0.3.19 [INFO] [stderr] Compiling once_cell v1.5.2 [INFO] [stderr] Compiling cfg-if v1.0.0 [INFO] [stderr] Compiling regex-syntax v0.6.22 [INFO] [stderr] Compiling cc v1.0.66 [INFO] [stderr] Compiling getrandom v0.2.2 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling syn v1.0.60 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Checking unicode-width v0.1.8 [INFO] [stderr] Compiling netcdf-sys v0.3.4 [INFO] [stderr] Compiling ndarray v0.13.1 [INFO] [stderr] Checking ppv-lite86 v0.2.10 [INFO] [stderr] Compiling unicode-segmentation v1.7.1 [INFO] [stderr] Checking strsim v0.8.0 [INFO] [stderr] Checking ansi_term v0.11.0 [INFO] [stderr] Checking vec_map v0.8.2 [INFO] [stderr] Compiling memchr v2.3.4 [INFO] [stderr] Compiling quote v1.0.8 [INFO] [stderr] Checking matrixmultiply v0.2.4 [INFO] [stderr] Checking textwrap v0.11.0 [INFO] [stderr] Compiling heck v0.3.2 [INFO] [stderr] Compiling libloading v0.6.7 [INFO] [stderr] Compiling proc-macro-error-attr v1.0.4 [INFO] [stderr] Compiling aho-corasick v0.7.15 [INFO] [stderr] Compiling num-traits v0.2.14 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling num-integer v0.1.44 [INFO] [stderr] Compiling thread_local v1.1.2 [INFO] [stderr] Compiling libz-sys v1.1.2 [INFO] [stderr] Checking atty v0.2.14 [INFO] [stderr] Checking clap v2.33.3 [INFO] [stderr] Compiling regex v1.4.3 [INFO] [stderr] Checking rand_core v0.6.1 [INFO] [stderr] Compiling proc-macro-error v1.0.4 [INFO] [stderr] Checking rand_chacha v0.3.0 [INFO] [stderr] Compiling structopt-derive v0.4.14 [INFO] [stderr] Checking rand v0.8.3 [INFO] [stderr] Compiling hdf5-sys v0.7.1 [INFO] [stderr] Checking tempfile v3.2.0 [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.7.1` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-2d1b2b3df17a3a83/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_NO_PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.1/build.rs:549:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55573d4eb82c - std::backtrace_rs::backtrace::libunwind::trace::ha21b6ba3016b6364 [INFO] [stderr] at /rustc/a7a572ce3edd6d476191fbfe92c9c1986e009b34/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stderr] 1: 0x55573d4eb82c - std::backtrace_rs::backtrace::trace_unsynchronized::hf515241a118c4e5a [INFO] [stderr] at /rustc/a7a572ce3edd6d476191fbfe92c9c1986e009b34/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x55573d4eb82c - std::sys_common::backtrace::_print_fmt::h339cd474d88b8467 [INFO] [stderr] at /rustc/a7a572ce3edd6d476191fbfe92c9c1986e009b34/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x55573d4eb82c - ::fmt::h06b8f714a0700be1 [INFO] [stderr] at /rustc/a7a572ce3edd6d476191fbfe92c9c1986e009b34/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x55573d50925c - core::fmt::write::h9a6d9c74526a6c1b [INFO] [stderr] at /rustc/a7a572ce3edd6d476191fbfe92c9c1986e009b34/library/core/src/fmt/mod.rs:1117:17 [INFO] [stderr] 5: 0x55573d4e8af5 - std::io::Write::write_fmt::hb1c61d571fcd8cbf [INFO] [stderr] at /rustc/a7a572ce3edd6d476191fbfe92c9c1986e009b34/library/std/src/io/mod.rs:1667:15 [INFO] [stderr] 6: 0x55573d4ed280 - std::sys_common::backtrace::_print::hcd1fe1237ea0c752 [INFO] [stderr] at /rustc/a7a572ce3edd6d476191fbfe92c9c1986e009b34/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x55573d4ed280 - std::sys_common::backtrace::print::hae7d6625a78cd32e [INFO] [stderr] at /rustc/a7a572ce3edd6d476191fbfe92c9c1986e009b34/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x55573d4ed280 - std::panicking::default_hook::{{closure}}::h9a7fffa4e6b396ed [INFO] [stderr] at /rustc/a7a572ce3edd6d476191fbfe92c9c1986e009b34/library/std/src/panicking.rs:210:50 [INFO] [stderr] 9: 0x55573d4ece3b - std::panicking::default_hook::h5dc58e323cddd123 [INFO] [stderr] at /rustc/a7a572ce3edd6d476191fbfe92c9c1986e009b34/library/std/src/panicking.rs:227:9 [INFO] [stderr] 10: 0x55573d4ed934 - std::panicking::rust_panic_with_hook::hbef17e4338d7de57 [INFO] [stderr] at /rustc/a7a572ce3edd6d476191fbfe92c9c1986e009b34/library/std/src/panicking.rs:624:17 [INFO] [stderr] 11: 0x55573d314bb2 - std::panicking::begin_panic::{{closure}}::h174cc6c5ecd255d1 [INFO] [stderr] at /rustc/a7a572ce3edd6d476191fbfe92c9c1986e009b34/library/std/src/panicking.rs:544:9 [INFO] [stderr] 12: 0x55573d314859 - std::sys_common::backtrace::__rust_end_short_backtrace::hd3b8a92dcafaa235 [INFO] [stderr] at /rustc/a7a572ce3edd6d476191fbfe92c9c1986e009b34/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x55573d314af3 - std::panicking::begin_panic::h737fb609fb2baea8 [INFO] [stderr] at /rustc/a7a572ce3edd6d476191fbfe92c9c1986e009b34/library/std/src/panicking.rs:543:12 [INFO] [stderr] 14: 0x55573d2e4bc7 - build_script_build::LibrarySearcher::try_locate_hdf5_library::hac2ab27b0fba1515 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.1/build.rs:549:13 [INFO] [stderr] 15: 0x55573d2e6397 - build_script_build::main::h6e934be73ee16d1f [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.1/build.rs:647:9 [INFO] [stderr] 16: 0x55573d2eb58b - core::ops::function::FnOnce::call_once::had14445c12bbbf9c [INFO] [stderr] at /rustc/a7a572ce3edd6d476191fbfe92c9c1986e009b34/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 17: 0x55573d2f236e - std::sys_common::backtrace::__rust_begin_short_backtrace::h580f33c3dbcf373d [INFO] [stderr] at /rustc/a7a572ce3edd6d476191fbfe92c9c1986e009b34/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 18: 0x55573d2f0541 - std::rt::lang_start::{{closure}}::had0eb7c8613e63ea [INFO] [stderr] at /rustc/a7a572ce3edd6d476191fbfe92c9c1986e009b34/library/std/src/rt.rs:63:18 [INFO] [stderr] 19: 0x55573d4ede3a - core::ops::function::impls:: for &F>::call_once::hc9bc8961e4809a14 [INFO] [stderr] at /rustc/a7a572ce3edd6d476191fbfe92c9c1986e009b34/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 20: 0x55573d4ede3a - std::panicking::try::do_call::h6f00e12df2af6579 [INFO] [stderr] at /rustc/a7a572ce3edd6d476191fbfe92c9c1986e009b34/library/std/src/panicking.rs:403:40 [INFO] [stderr] 21: 0x55573d4ede3a - std::panicking::try::h588c31a0a9a8ad2c [INFO] [stderr] at /rustc/a7a572ce3edd6d476191fbfe92c9c1986e009b34/library/std/src/panicking.rs:367:19 [INFO] [stderr] 22: 0x55573d4ede3a - std::panic::catch_unwind::h8ebc4fcb0e51bec0 [INFO] [stderr] at /rustc/a7a572ce3edd6d476191fbfe92c9c1986e009b34/library/std/src/panic.rs:129:14 [INFO] [stderr] 23: 0x55573d4ede3a - std::rt::lang_start_internal::{{closure}}::had93e50fbfd893a1 [INFO] [stderr] at /rustc/a7a572ce3edd6d476191fbfe92c9c1986e009b34/library/std/src/rt.rs:45:48 [INFO] [stderr] 24: 0x55573d4ede3a - std::panicking::try::do_call::hf70c5056d8b410b7 [INFO] [stderr] at /rustc/a7a572ce3edd6d476191fbfe92c9c1986e009b34/library/std/src/panicking.rs:403:40 [INFO] [stderr] 25: 0x55573d4ede3a - std::panicking::try::h0c680320de5deb84 [INFO] [stderr] at /rustc/a7a572ce3edd6d476191fbfe92c9c1986e009b34/library/std/src/panicking.rs:367:19 [INFO] [stderr] 26: 0x55573d4ede3a - std::panic::catch_unwind::h7b94a99f13366c53 [INFO] [stderr] at /rustc/a7a572ce3edd6d476191fbfe92c9c1986e009b34/library/std/src/panic.rs:129:14 [INFO] [stderr] 27: 0x55573d4ede3a - std::rt::lang_start_internal::hca14fb2549072049 [INFO] [stderr] at /rustc/a7a572ce3edd6d476191fbfe92c9c1986e009b34/library/std/src/rt.rs:45:20 [INFO] [stderr] 28: 0x55573d2f0510 - std::rt::lang_start::h1f5898b20e9e7098 [INFO] [stderr] at /rustc/a7a572ce3edd6d476191fbfe92c9c1986e009b34/library/std/src/rt.rs:62:5 [INFO] [stderr] 29: 0x55573d2e784c - main [INFO] [stderr] 30: 0x7fc7149240b3 - __libc_start_main [INFO] [stderr] 31: 0x55573d2dfede - _start [INFO] [stderr] 32: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] [stderr] error: failed to migrate to next edition [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `cargo fix --edition --allow-no-vcs --allow-dirty --frozen --all --all-targets --message-format=json` (exit status: 101) [INFO] running `Command { std: "docker" "inspect" "814f1753498665d6117e3939f47a11e8701f4ec39c4bdfbfee3f908a396ff4ea", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "814f1753498665d6117e3939f47a11e8701f4ec39c4bdfbfee3f908a396ff4ea", kill_on_drop: false }` [INFO] [stdout] 814f1753498665d6117e3939f47a11e8701f4ec39c4bdfbfee3f908a396ff4ea