[INFO] fetching crate hdf5 0.7.1... [INFO] checking hdf5-0.7.1 against try#a7a572ce3edd6d476191fbfe92c9c1986e009b34 for pr-87190-3 [INFO] extracting crate hdf5 0.7.1 into /workspace/builds/worker-6/source [INFO] validating manifest of crates.io crate hdf5 0.7.1 on toolchain a7a572ce3edd6d476191fbfe92c9c1986e009b34 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a7a572ce3edd6d476191fbfe92c9c1986e009b34" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate hdf5 0.7.1 [INFO] finished tweaking crates.io crate hdf5 0.7.1 [INFO] tweaked toml for crates.io crate hdf5 0.7.1 written to /workspace/builds/worker-6/source/Cargo.toml [INFO] crate crates.io crate hdf5 0.7.1 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a7a572ce3edd6d476191fbfe92c9c1986e009b34" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+a7a572ce3edd6d476191fbfe92c9c1986e009b34" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] d89ec0e39f20206f66ef6ce648afce7911d80e0e726b960bb357125b8485bea5 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "d89ec0e39f20206f66ef6ce648afce7911d80e0e726b960bb357125b8485bea5", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "d89ec0e39f20206f66ef6ce648afce7911d80e0e726b960bb357125b8485bea5", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "d89ec0e39f20206f66ef6ce648afce7911d80e0e726b960bb357125b8485bea5", kill_on_drop: false }` [INFO] [stdout] d89ec0e39f20206f66ef6ce648afce7911d80e0e726b960bb357125b8485bea5 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+a7a572ce3edd6d476191fbfe92c9c1986e009b34" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 267e4ca221c734a1603c78c1c039a00825dbbfd182952a35d06471f6f6697411 [INFO] running `Command { std: "docker" "start" "-a" "267e4ca221c734a1603c78c1c039a00825dbbfd182952a35d06471f6f6697411", kill_on_drop: false }` [INFO] [stderr] Copying to /tmp/fixit [INFO] [stderr] Running `cargo fix --edition` [INFO] [stderr] note: Switching to Edition 2021 will enable the use of the version 2 feature resolver in Cargo. [INFO] [stderr] This may cause some dependencies to be built with fewer features enabled than previously. [INFO] [stderr] More information about the resolver changes may be found at https://doc.rust-lang.org/nightly/edition-guide/rust-2021/default-cargo-resolver.html [INFO] [stderr] When building the following dependencies, the given features will no longer be used: [INFO] [stderr] [INFO] [stderr] scopeguard v1.1.0: default, use_std [INFO] [stderr] syn v1.0.38 (as host dependency): full, visit [INFO] [stderr] [INFO] [stderr] Compiling memchr v2.3.3 [INFO] [stderr] Checking cfg-if v1.0.0 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling libloading v0.6.2 [INFO] [stderr] Compiling pkg-config v0.3.18 [INFO] [stderr] Compiling unicode-xid v0.2.1 [INFO] [stderr] Compiling syn v1.0.38 [INFO] [stderr] Compiling ndarray v0.13.1 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Checking ascii v1.0.0 [INFO] [stderr] Compiling hdf5 v0.7.1 (/tmp/fixit) [INFO] [stderr] Checking remove_dir_all v0.5.3 [INFO] [stderr] Compiling paste v1.0.4 [INFO] [stderr] Compiling num-traits v0.2.12 [INFO] [stderr] Migrating build.rs from 2018 edition to 2021 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling num-integer v0.1.43 [INFO] [stderr] Checking lock_api v0.4.2 [INFO] [stderr] Checking pretty_assertions v0.6.1 [INFO] [stderr] Checking instant v0.1.9 [INFO] [stderr] Checking matrixmultiply v0.2.3 [INFO] [stderr] Compiling proc-macro2 v1.0.19 [INFO] [stderr] Compiling thread_local v1.0.1 [INFO] [stderr] Checking getrandom v0.2.2 [INFO] [stderr] Checking parking_lot_core v0.8.2 [INFO] [stderr] Checking hdf5-types v0.7.1 [INFO] [stderr] Checking rand_core v0.6.1 [INFO] [stderr] Checking parking_lot v0.11.1 [INFO] [stderr] Checking aho-corasick v0.7.13 [INFO] [stderr] Compiling quote v1.0.7 [INFO] [stderr] Checking rand_chacha v0.3.0 [INFO] [stderr] Checking rand v0.8.3 [INFO] [stderr] Checking regex v1.3.9 [INFO] [stderr] Checking tempfile v3.2.0 [INFO] [stderr] Compiling hdf5-sys v0.7.1 [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.7.1` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-1fbaa1ebdbaf3492/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_NO_PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.1/build.rs:549:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x561a2b10a1ac - std::backtrace_rs::backtrace::libunwind::trace::ha21b6ba3016b6364 [INFO] [stderr] at /rustc/a7a572ce3edd6d476191fbfe92c9c1986e009b34/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stderr] 1: 0x561a2b10a1ac - std::backtrace_rs::backtrace::trace_unsynchronized::hf515241a118c4e5a [INFO] [stderr] at /rustc/a7a572ce3edd6d476191fbfe92c9c1986e009b34/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x561a2b10a1ac - std::sys_common::backtrace::_print_fmt::h339cd474d88b8467 [INFO] [stderr] at /rustc/a7a572ce3edd6d476191fbfe92c9c1986e009b34/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x561a2b10a1ac - ::fmt::h06b8f714a0700be1 [INFO] [stderr] at /rustc/a7a572ce3edd6d476191fbfe92c9c1986e009b34/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x561a2b127bbc - core::fmt::write::h9a6d9c74526a6c1b [INFO] [stderr] at /rustc/a7a572ce3edd6d476191fbfe92c9c1986e009b34/library/core/src/fmt/mod.rs:1117:17 [INFO] [stderr] 5: 0x561a2b107475 - std::io::Write::write_fmt::hb1c61d571fcd8cbf [INFO] [stderr] at /rustc/a7a572ce3edd6d476191fbfe92c9c1986e009b34/library/std/src/io/mod.rs:1667:15 [INFO] [stderr] 6: 0x561a2b10bc00 - std::sys_common::backtrace::_print::hcd1fe1237ea0c752 [INFO] [stderr] at /rustc/a7a572ce3edd6d476191fbfe92c9c1986e009b34/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x561a2b10bc00 - std::sys_common::backtrace::print::hae7d6625a78cd32e [INFO] [stderr] at /rustc/a7a572ce3edd6d476191fbfe92c9c1986e009b34/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x561a2b10bc00 - std::panicking::default_hook::{{closure}}::h9a7fffa4e6b396ed [INFO] [stderr] at /rustc/a7a572ce3edd6d476191fbfe92c9c1986e009b34/library/std/src/panicking.rs:210:50 [INFO] [stderr] 9: 0x561a2b10b7bb - std::panicking::default_hook::h5dc58e323cddd123 [INFO] [stderr] at /rustc/a7a572ce3edd6d476191fbfe92c9c1986e009b34/library/std/src/panicking.rs:227:9 [INFO] [stderr] 10: 0x561a2b10c2b4 - std::panicking::rust_panic_with_hook::hbef17e4338d7de57 [INFO] [stderr] at /rustc/a7a572ce3edd6d476191fbfe92c9c1986e009b34/library/std/src/panicking.rs:624:17 [INFO] [stderr] 11: 0x561a2af33d72 - std::panicking::begin_panic::{{closure}}::hae8ba9ee6dd0e006 [INFO] [stderr] at /rustc/a7a572ce3edd6d476191fbfe92c9c1986e009b34/library/std/src/panicking.rs:544:9 [INFO] [stderr] 12: 0x561a2af2f259 - std::sys_common::backtrace::__rust_end_short_backtrace::hffa0f346bf0114e5 [INFO] [stderr] at /rustc/a7a572ce3edd6d476191fbfe92c9c1986e009b34/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x561a2af33cb3 - std::panicking::begin_panic::h21da261340715c99 [INFO] [stderr] at /rustc/a7a572ce3edd6d476191fbfe92c9c1986e009b34/library/std/src/panicking.rs:543:12 [INFO] [stderr] 14: 0x561a2af04bd7 - build_script_build::LibrarySearcher::try_locate_hdf5_library::h7b83347d73d3479c [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.1/build.rs:549:13 [INFO] [stderr] 15: 0x561a2af063a7 - build_script_build::main::hf168214a2a3a8503 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.1/build.rs:647:9 [INFO] [stderr] 16: 0x561a2af09bfb - core::ops::function::FnOnce::call_once::hc64f302006864d38 [INFO] [stderr] at /rustc/a7a572ce3edd6d476191fbfe92c9c1986e009b34/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 17: 0x561a2af10a4e - std::sys_common::backtrace::__rust_begin_short_backtrace::h1d1c89f88d440384 [INFO] [stderr] at /rustc/a7a572ce3edd6d476191fbfe92c9c1986e009b34/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 18: 0x561a2af0e181 - std::rt::lang_start::{{closure}}::he7051224709473f8 [INFO] [stderr] at /rustc/a7a572ce3edd6d476191fbfe92c9c1986e009b34/library/std/src/rt.rs:63:18 [INFO] [stderr] 19: 0x561a2b10c7ba - core::ops::function::impls:: for &F>::call_once::hc9bc8961e4809a14 [INFO] [stderr] at /rustc/a7a572ce3edd6d476191fbfe92c9c1986e009b34/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 20: 0x561a2b10c7ba - std::panicking::try::do_call::h6f00e12df2af6579 [INFO] [stderr] at /rustc/a7a572ce3edd6d476191fbfe92c9c1986e009b34/library/std/src/panicking.rs:403:40 [INFO] [stderr] 21: 0x561a2b10c7ba - std::panicking::try::h588c31a0a9a8ad2c [INFO] [stderr] at /rustc/a7a572ce3edd6d476191fbfe92c9c1986e009b34/library/std/src/panicking.rs:367:19 [INFO] [stderr] 22: 0x561a2b10c7ba - std::panic::catch_unwind::h8ebc4fcb0e51bec0 [INFO] [stderr] at /rustc/a7a572ce3edd6d476191fbfe92c9c1986e009b34/library/std/src/panic.rs:129:14 [INFO] [stderr] 23: 0x561a2b10c7ba - std::rt::lang_start_internal::{{closure}}::had93e50fbfd893a1 [INFO] [stderr] at /rustc/a7a572ce3edd6d476191fbfe92c9c1986e009b34/library/std/src/rt.rs:45:48 [INFO] [stderr] 24: 0x561a2b10c7ba - std::panicking::try::do_call::hf70c5056d8b410b7 [INFO] [stderr] at /rustc/a7a572ce3edd6d476191fbfe92c9c1986e009b34/library/std/src/panicking.rs:403:40 [INFO] [stderr] 25: 0x561a2b10c7ba - std::panicking::try::h0c680320de5deb84 [INFO] [stderr] at /rustc/a7a572ce3edd6d476191fbfe92c9c1986e009b34/library/std/src/panicking.rs:367:19 [INFO] [stderr] 26: 0x561a2b10c7ba - std::panic::catch_unwind::h7b94a99f13366c53 [INFO] [stderr] at /rustc/a7a572ce3edd6d476191fbfe92c9c1986e009b34/library/std/src/panic.rs:129:14 [INFO] [stderr] 27: 0x561a2b10c7ba - std::rt::lang_start_internal::hca14fb2549072049 [INFO] [stderr] at /rustc/a7a572ce3edd6d476191fbfe92c9c1986e009b34/library/std/src/rt.rs:45:20 [INFO] [stderr] 28: 0x561a2af0e150 - std::rt::lang_start::hfd380b174a962e5b [INFO] [stderr] at /rustc/a7a572ce3edd6d476191fbfe92c9c1986e009b34/library/std/src/rt.rs:62:5 [INFO] [stderr] 29: 0x561a2af0785c - main [INFO] [stderr] 30: 0x7f9b8e1420b3 - __libc_start_main [INFO] [stderr] 31: 0x561a2aeffede - _start [INFO] [stderr] 32: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] [stderr] error: failed to migrate to next edition [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `cargo fix --edition --allow-no-vcs --allow-dirty --frozen --all --all-targets --message-format=json` (exit status: 101) [INFO] running `Command { std: "docker" "inspect" "267e4ca221c734a1603c78c1c039a00825dbbfd182952a35d06471f6f6697411", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "267e4ca221c734a1603c78c1c039a00825dbbfd182952a35d06471f6f6697411", kill_on_drop: false }` [INFO] [stdout] 267e4ca221c734a1603c78c1c039a00825dbbfd182952a35d06471f6f6697411