[INFO] fetching crate gchemol-core 0.0.42...
[INFO] checking gchemol-core-0.0.42 against try#a7a572ce3edd6d476191fbfe92c9c1986e009b34 for pr-87190-3
[INFO] extracting crate gchemol-core 0.0.42 into /workspace/builds/worker-9/source
[INFO] validating manifest of crates.io crate gchemol-core 0.0.42 on toolchain a7a572ce3edd6d476191fbfe92c9c1986e009b34
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a7a572ce3edd6d476191fbfe92c9c1986e009b34" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate gchemol-core 0.0.42
[INFO] finished tweaking crates.io crate gchemol-core 0.0.42
[INFO] tweaked toml for crates.io crate gchemol-core 0.0.42 written to /workspace/builds/worker-9/source/Cargo.toml
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a7a572ce3edd6d476191fbfe92c9c1986e009b34" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }`
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a7a572ce3edd6d476191fbfe92c9c1986e009b34" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+a7a572ce3edd6d476191fbfe92c9c1986e009b34" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] 6c81a3c04b046d02d4b3e06e2c0c537ac8982a1eedce5a58f9943134ffbed841
[INFO] running `Command { std: "docker" "start" "-a" "6c81a3c04b046d02d4b3e06e2c0c537ac8982a1eedce5a58f9943134ffbed841", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "6c81a3c04b046d02d4b3e06e2c0c537ac8982a1eedce5a58f9943134ffbed841", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "6c81a3c04b046d02d4b3e06e2c0c537ac8982a1eedce5a58f9943134ffbed841", kill_on_drop: false }`
[INFO] [stdout] 6c81a3c04b046d02d4b3e06e2c0c537ac8982a1eedce5a58f9943134ffbed841
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+a7a572ce3edd6d476191fbfe92c9c1986e009b34" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 62c0f7a8b1e2074125c07689d33c3b7e93abfc0c5f7310584863b710645fc023
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "62c0f7a8b1e2074125c07689d33c3b7e93abfc0c5f7310584863b710645fc023", kill_on_drop: false }`
[INFO] [stderr] Copying to /tmp/fixit
[INFO] [stderr] Running `cargo fix --edition`
[INFO] [stderr]    Compiling autocfg v1.0.1
[INFO] [stderr]    Compiling unicode-xid v0.2.2
[INFO] [stderr]    Compiling syn v1.0.75
[INFO] [stderr]     Checking cfg-if v1.0.0
[INFO] [stderr]    Compiling serde_derive v1.0.128
[INFO] [stderr]    Compiling libm v0.2.1
[INFO] [stderr]    Compiling version_check v0.9.3
[INFO] [stderr]     Checking lazy_static v1.4.0
[INFO] [stderr]    Compiling getrandom v0.1.16
[INFO] [stderr]    Compiling crossbeam-utils v0.8.5
[INFO] [stderr]    Compiling memchr v2.4.1
[INFO] [stderr]     Checking ppv-lite86 v0.2.10
[INFO] [stderr]    Compiling crossbeam-epoch v0.9.5
[INFO] [stderr]     Checking unicode-width v0.1.8
[INFO] [stderr]     Checking either v1.6.1
[INFO] [stderr]     Checking scopeguard v1.1.0
[INFO] [stderr]    Compiling rayon-core v1.9.1
[INFO] [stderr]    Compiling log v0.4.14
[INFO] [stderr]     Checking rawpointer v0.2.1
[INFO] [stderr]    Compiling ryu v1.0.5
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]    Compiling serde_json v1.0.66
[INFO] [stderr]     Checking ansi_term v0.11.0
[INFO] [stderr]     Checking termcolor v1.1.2
[INFO] [stderr]     Checking strsim v0.8.0
[INFO] [stderr]     Checking regex-syntax v0.6.25
[INFO] [stderr]     Checking humantime v2.1.0
[INFO] [stderr]     Checking strsim v0.10.0
[INFO] [stderr]     Checking os_str_bytes v3.1.0
[INFO] [stderr]     Checking fixedbitset v0.2.0
[INFO] [stderr]     Checking textwrap v0.11.0
[INFO] [stderr]     Checking textwrap v0.14.2
[INFO] [stderr]     Checking itertools v0.9.0
[INFO] [stderr]     Checking itertools v0.8.2
[INFO] [stderr]     Checking matrixmultiply v0.2.4
[INFO] [stderr]    Compiling proc-macro2 v1.0.28
[INFO] [stderr]     Checking atty v0.2.14
[INFO] [stderr]     Checking num_cpus v1.13.0
[INFO] [stderr]     Checking shared_child v0.3.5
[INFO] [stderr]     Checking os_pipe v0.9.2
[INFO] [stderr]     Checking generic-array v0.13.3
[INFO] [stderr]     Checking clap v2.33.3
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]     Checking duct v0.13.5
[INFO] [stderr]    Compiling num-traits v0.2.14
[INFO] [stderr]    Compiling memoffset v0.6.4
[INFO] [stderr]    Compiling num-integer v0.1.44
[INFO] [stderr]    Compiling indexmap v1.7.0
[INFO] [stderr]    Compiling num-complex v0.2.4
[INFO] [stderr]    Compiling num-rational v0.2.4
[INFO] [stderr]    Compiling rayon v1.5.1
[INFO] [stderr]     Checking rand_core v0.5.1
[INFO] [stderr]     Checking crossbeam-channel v0.5.1
[INFO] [stderr]    Compiling quote v1.0.9
[INFO] [stderr]     Checking rand_chacha v0.2.2
[INFO] [stderr]     Checking aho-corasick v0.7.18
[INFO] [stderr]     Checking rand v0.7.3
[INFO] [stderr]     Checking crossbeam-deque v0.8.1
[INFO] [stderr]     Checking regex v1.5.4
[INFO] [stderr]     Checking approx v0.3.2
[INFO] [stderr]     Checking rand_distr v0.2.2
[INFO] [stderr]     Checking env_logger v0.9.0
[INFO] [stderr]    Compiling clap_derive v3.0.0-beta.4
[INFO] [stderr]    Compiling structopt-derive v0.4.15
[INFO] [stderr]     Checking structopt v0.3.22
[INFO] [stderr]     Checking clap v3.0.0-beta.4
[INFO] [stderr]     Checking serde v1.0.128
[INFO] [stderr]     Checking toml v0.5.8
[INFO] [stderr]     Checking petgraph v0.5.1
[INFO] [stderr]     Checking envy v0.4.2
[INFO] [stderr]     Checking bimap v0.4.0
[INFO] [stderr]     Checking alga v0.9.3
[INFO] [stderr]     Checking gchemol-gut v0.1.7
[INFO] [stderr]     Checking nalgebra v0.20.0
[INFO] [stderr]     Checking gchemol-graph v0.1.1
[INFO] [stderr]     Checking vecfx v0.1.2
[INFO] [stderr]     Checking gchemol-lattice v0.1.0
[INFO] [stderr]     Checking octree v0.1.0
[INFO] [stderr]     Checking gchemol-neighbors v0.1.0
[INFO] [stderr]     Checking gchemol-core v0.0.42 (/tmp/fixit)
[INFO] [stderr]    Migrating src/lib.rs from 2018 edition to 2021
[INFO] [stderr]        Fixed src/property.rs (2 fixes)
[INFO] [stderr]    Migrating tests/formula.rs from 2018 edition to 2021
[INFO] [stderr]    Migrating tests/basic.rs from 2018 edition to 2021
[INFO] [stderr]    Migrating tests/vector3.rs from 2018 edition to 2021
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 1m 46s
[INFO] [stderr] Running `cargo check` to verify 2021
[INFO] [stderr]     Checking gchemol-core v0.0.42 (/tmp/fixit)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 1.99s
[INFO] running `Command { std: "docker" "inspect" "62c0f7a8b1e2074125c07689d33c3b7e93abfc0c5f7310584863b710645fc023", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "62c0f7a8b1e2074125c07689d33c3b7e93abfc0c5f7310584863b710645fc023", kill_on_drop: false }`
[INFO] [stdout] 62c0f7a8b1e2074125c07689d33c3b7e93abfc0c5f7310584863b710645fc023