[INFO] fetching crate gchemol 0.0.41...
[INFO] checking gchemol-0.0.41 against try#a7a572ce3edd6d476191fbfe92c9c1986e009b34 for pr-87190-3
[INFO] extracting crate gchemol 0.0.41 into /workspace/builds/worker-13/source
[INFO] validating manifest of crates.io crate gchemol 0.0.41 on toolchain a7a572ce3edd6d476191fbfe92c9c1986e009b34
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a7a572ce3edd6d476191fbfe92c9c1986e009b34" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate gchemol 0.0.41
[INFO] finished tweaking crates.io crate gchemol 0.0.41
[INFO] tweaked toml for crates.io crate gchemol 0.0.41 written to /workspace/builds/worker-13/source/Cargo.toml
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a7a572ce3edd6d476191fbfe92c9c1986e009b34" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }`
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a7a572ce3edd6d476191fbfe92c9c1986e009b34" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded gchemol-geometry v0.0.39
[INFO] [stderr]   Downloaded gchemol-readwrite v0.0.41
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+a7a572ce3edd6d476191fbfe92c9c1986e009b34" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 0503ac0b29f6d5dc352d6154ebf79f384d002dcf8b15460c3f3e4f7c060379e0
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "0503ac0b29f6d5dc352d6154ebf79f384d002dcf8b15460c3f3e4f7c060379e0", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "0503ac0b29f6d5dc352d6154ebf79f384d002dcf8b15460c3f3e4f7c060379e0", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "0503ac0b29f6d5dc352d6154ebf79f384d002dcf8b15460c3f3e4f7c060379e0", kill_on_drop: false }`
[INFO] [stdout] 0503ac0b29f6d5dc352d6154ebf79f384d002dcf8b15460c3f3e4f7c060379e0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+a7a572ce3edd6d476191fbfe92c9c1986e009b34" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 6891edb10c44c2701c7aa2fec21f6786d09f3ae4c969e45874c845350263848f
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "6891edb10c44c2701c7aa2fec21f6786d09f3ae4c969e45874c845350263848f", kill_on_drop: false }`
[INFO] [stderr] Copying to /tmp/fixit
[INFO] [stderr] Running `cargo fix --edition`
[INFO] [stderr] note: Switching to Edition 2021 will enable the use of the version 2 feature resolver in Cargo.
[INFO] [stderr] This may cause some dependencies to be built with fewer features enabled than previously.
[INFO] [stderr] More information about the resolver changes may be found at https://doc.rust-lang.org/nightly/edition-guide/rust-2021/default-cargo-resolver.html
[INFO] [stderr] When building the following dependencies, the given features will no longer be used:
[INFO] [stderr] 
[INFO] [stderr]   approx v0.3.2: default, std
[INFO] [stderr]   regex v1.5.4 (as host dependency): aho-corasick, default, memchr, perf, perf-cache, perf-dfa, perf-inline, perf-literal, unicode, unicode-age, unicode-bool, unicode-case, unicode-gencat, unicode-script, unicode-segment
[INFO] [stderr]   regex-syntax v0.6.25 (as host dependency): default, unicode, unicode-age, unicode-bool, unicode-case, unicode-gencat, unicode-script, unicode-segment
[INFO] [stderr] 
[INFO] [stderr]    Compiling libc v0.2.100
[INFO] [stderr]    Compiling syn v1.0.75
[INFO] [stderr]    Compiling memchr v2.4.1
[INFO] [stderr]     Checking regex-syntax v0.6.25
[INFO] [stderr]    Compiling serde_json v1.0.66
[INFO] [stderr]     Checking os_str_bytes v3.1.0
[INFO] [stderr]     Checking strsim v0.10.0
[INFO] [stderr]     Checking unic-char-range v0.9.0
[INFO] [stderr]     Checking unic-common v0.9.0
[INFO] [stderr]    Compiling lexical-core v0.7.6
[INFO] [stderr]     Checking arrayvec v0.5.2
[INFO] [stderr]     Checking static_assertions v1.1.0
[INFO] [stderr]     Checking ucd-trie v0.1.3
[INFO] [stderr]     Checking deunicode v0.4.3
[INFO] [stderr]     Checking remove_dir_all v0.5.3
[INFO] [stderr]     Checking quick-error v2.0.1
[INFO] [stderr]    Compiling num-traits v0.2.14
[INFO] [stderr]    Compiling memoffset v0.6.4
[INFO] [stderr]    Compiling indexmap v1.7.0
[INFO] [stderr]    Compiling num-complex v0.2.4
[INFO] [stderr]    Compiling num-rational v0.2.4
[INFO] [stderr]    Compiling rayon v1.5.1
[INFO] [stderr]    Compiling nom v5.1.2
[INFO] [stderr]     Checking textwrap v0.14.2
[INFO] [stderr]     Checking itertools v0.9.0
[INFO] [stderr]     Checking thread_local v1.1.3
[INFO] [stderr]     Checking unic-ucd-version v0.9.0
[INFO] [stderr]     Checking unic-char-property v0.9.0
[INFO] [stderr]     Checking pest v2.1.3
[INFO] [stderr]     Checking slug v0.1.4
[INFO] [stderr]     Checking crossbeam-utils v0.8.5
[INFO] [stderr]    Compiling pest_meta v2.1.3
[INFO] [stderr]     Checking generic-array v0.13.3
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]     Checking unic-ucd-segment v0.9.0
[INFO] [stderr]     Checking crossbeam-epoch v0.9.5
[INFO] [stderr]     Checking crossbeam-channel v0.5.1
[INFO] [stderr]     Checking crossbeam-deque v0.8.1
[INFO] [stderr]     Checking unic-segment v0.9.0
[INFO] [stderr]     Checking aho-corasick v0.7.18
[INFO] [stderr]     Checking bstr v0.2.16
[INFO] [stderr]     Checking getrandom v0.1.16
[INFO] [stderr]     Checking atty v0.2.14
[INFO] [stderr]     Checking num_cpus v1.13.0
[INFO] [stderr]     Checking os_pipe v0.9.2
[INFO] [stderr]     Checking shared_child v0.3.5
[INFO] [stderr]     Checking getrandom v0.2.3
[INFO] [stderr]     Checking clap v2.33.3
[INFO] [stderr]     Checking duct v0.13.5
[INFO] [stderr]     Checking rayon-core v1.9.1
[INFO] [stderr]     Checking rand_core v0.6.3
[INFO] [stderr]     Checking rand_core v0.5.1
[INFO] [stderr]     Checking num-integer v0.1.44
[INFO] [stderr]     Checking approx v0.3.2
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]     Checking rand_chacha v0.2.2
[INFO] [stderr]     Checking chrono v0.4.19
[INFO] [stderr]     Checking rand v0.7.3
[INFO] [stderr]     Checking rand v0.8.4
[INFO] [stderr]     Checking regex v1.5.4
[INFO] [stderr]     Checking tempfile v3.2.0
[INFO] [stderr]     Checking rand_distr v0.2.2
[INFO] [stderr]     Checking env_logger v0.9.0
[INFO] [stderr]     Checking globset v0.4.8
[INFO] [stderr]     Checking ignore v0.4.18
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling pest_generator v2.1.3
[INFO] [stderr]    Compiling parse-zoneinfo v0.3.0
[INFO] [stderr]     Checking globwalk v0.8.1
[INFO] [stderr]    Compiling chrono-tz v0.5.3
[INFO] [stderr]    Compiling serde_derive v1.0.128
[INFO] [stderr]    Compiling clap_derive v3.0.0-beta.4
[INFO] [stderr]    Compiling structopt-derive v0.4.15
[INFO] [stderr]    Compiling pest_derive v2.1.0
[INFO] [stderr]     Checking structopt v0.3.22
[INFO] [stderr]     Checking clap v3.0.0-beta.4
[INFO] [stderr]     Checking serde v1.0.128
[INFO] [stderr]     Checking toml v0.5.8
[INFO] [stderr]     Checking petgraph v0.5.1
[INFO] [stderr]     Checking envy v0.4.2
[INFO] [stderr]     Checking bimap v0.4.0
[INFO] [stderr]     Checking alga v0.9.3
[INFO] [stderr]     Checking handlebars v3.5.5
[INFO] [stderr]     Checking tera v1.12.1
[INFO] [stderr]     Checking gchemol-gut v0.1.7
[INFO] [stderr]     Checking nalgebra v0.20.0
[INFO] [stderr]     Checking gchemol-parser v0.2.1
[INFO] [stderr]     Checking gchemol-graph v0.1.1
[INFO] [stderr]     Checking vecfx v0.1.2
[INFO] [stderr]     Checking gchemol-lattice v0.1.0
[INFO] [stderr]     Checking octree v0.1.0
[INFO] [stderr]     Checking gchemol-geometry v0.0.39
[INFO] [stderr]     Checking gchemol-neighbors v0.1.0
[INFO] [stderr]     Checking gchemol-core v0.0.42
[INFO] [stderr]     Checking gchemol-readwrite v0.0.41
[INFO] [stderr]     Checking gchemol v0.0.41 (/tmp/fixit)
[INFO] [stderr]    Migrating src/lib.rs from 2018 edition to 2021
[INFO] [stderr]    Migrating tests/crystal.rs from 2018 edition to 2021
[INFO] [stderr]    Migrating tests/molecule.rs from 2018 edition to 2021
[INFO] [stderr]    Migrating tests/io.rs from 2018 edition to 2021
[INFO] [stderr]        Fixed tests/io.rs (1 fix)
[INFO] [stderr]        Fixed tests/molecule.rs (1 fix)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 2m 13s
[INFO] [stderr] Running `cargo check` to verify 2021
[INFO] [stderr]     Checking chrono-tz v0.5.3
[INFO] [stderr]     Checking tera v1.12.1
[INFO] [stderr]     Checking gchemol-readwrite v0.0.41
[INFO] [stderr]     Checking gchemol v0.0.41 (/tmp/fixit)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 13.22s
[INFO] running `Command { std: "docker" "inspect" "6891edb10c44c2701c7aa2fec21f6786d09f3ae4c969e45874c845350263848f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "6891edb10c44c2701c7aa2fec21f6786d09f3ae4c969e45874c845350263848f", kill_on_drop: false }`
[INFO] [stdout] 6891edb10c44c2701c7aa2fec21f6786d09f3ae4c969e45874c845350263848f