[INFO] fetching crate biostats 0.6.4... 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[INFO] [stderr] Downloaded ndarray-rand v0.9.0 [INFO] [stderr] Downloaded program-flow v0.1.3 [INFO] [stderr] Downloaded biofile v1.10.3 [INFO] [stderr] Downloaded math v0.10.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-51/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-51/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+a7a572ce3edd6d476191fbfe92c9c1986e009b34" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 3f2ee3e4ed4b5cbd078a7e2a648e21bfc927d9deb23e7e4df8cf461226ccfff1 [INFO] running `Command { std: "docker" "start" "-a" "3f2ee3e4ed4b5cbd078a7e2a648e21bfc927d9deb23e7e4df8cf461226ccfff1", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "3f2ee3e4ed4b5cbd078a7e2a648e21bfc927d9deb23e7e4df8cf461226ccfff1", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "3f2ee3e4ed4b5cbd078a7e2a648e21bfc927d9deb23e7e4df8cf461226ccfff1", kill_on_drop: false }` [INFO] [stdout] 3f2ee3e4ed4b5cbd078a7e2a648e21bfc927d9deb23e7e4df8cf461226ccfff1 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-51/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-51/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+a7a572ce3edd6d476191fbfe92c9c1986e009b34" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 720a234282df1e6e33c91dbeba77e028f6893332048ad93aa6f293ca97917508 [INFO] running `Command { std: "docker" "start" "-a" "720a234282df1e6e33c91dbeba77e028f6893332048ad93aa6f293ca97917508", kill_on_drop: false }` [INFO] [stderr] Copying to /tmp/fixit [INFO] [stderr] Running `cargo fix --edition` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling libc v0.2.73 [INFO] [stderr] Checking lazy_static v1.4.0 [INFO] [stderr] Compiling matrixmultiply v0.1.15 [INFO] [stderr] Compiling proc-macro2 v1.0.28 [INFO] [stderr] Checking rawpointer v0.1.0 [INFO] [stderr] Compiling unicode-xid v0.2.2 [INFO] [stderr] Compiling log v0.4.11 [INFO] [stderr] Checking unicode-width v0.1.8 [INFO] [stderr] Compiling ndarray v0.12.1 [INFO] [stderr] Compiling syn v1.0.74 [INFO] [stderr] Compiling once_cell v1.8.0 [INFO] [stderr] Compiling num-traits v0.2.12 [INFO] [stderr] Compiling crossbeam-utils v0.7.2 [INFO] [stderr] Compiling num-integer v0.1.43 [INFO] [stderr] Compiling memoffset v0.5.5 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling crossbeam-epoch v0.8.2 [INFO] [stderr] 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[stderr] Checking program-flow v0.1.3 [INFO] [stderr] Checking math v0.10.0 [INFO] [stderr] Checking ndarray-rand v0.9.0 [INFO] [stderr] Checking biofile v1.10.3 [INFO] [stderr] Compiling enum_dispatch v0.3.7 [INFO] [stderr] Checking biostats v0.6.4 (/tmp/fixit) [INFO] [stderr] Migrating src/lib.rs from 2018 edition to 2021 [INFO] [stderr] warning: failed to automatically apply fixes suggested by rustc to crate `biostats` [INFO] [stderr] [INFO] [stderr] after fixes were automatically applied the compiler reported errors within these files: [INFO] [stderr] [INFO] [stderr] * src/linear_track_mixture.rs [INFO] [stderr] * src/track_correlation.rs [INFO] [stderr] * src/track_histogram.rs [INFO] [stderr] * src/track_zipper.rs [INFO] [stderr] [INFO] [stderr] This likely indicates a bug in either rustc or cargo itself, [INFO] [stderr] and we would appreciate a bug report! You're likely to see [INFO] [stderr] a number of compiler warnings after this message which cargo [INFO] [stderr] attempted to fix but failed. If you could open an issue at [INFO] [stderr] https://github.com/rust-lang/rust/issues [INFO] [stderr] quoting the full output of this command we'd be very appreciative! [INFO] [stderr] Note that you may be able to make some more progress in the near-term [INFO] [stderr] fixing code with the `--broken-code` flag [INFO] [stderr] [INFO] [stderr] The following errors were reported: [INFO] [stderr] error[E0107]: missing generics for trait `ToChromIntervalValueIter` [INFO] [stderr] --> src/linear_track_mixture.rs:52:18 [INFO] [stderr] | [INFO] [stderr] 52 | ::get_chrom_to_interval_to_val( [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^ expected 4 generic arguments [INFO] [stderr] | [INFO] [stderr] note: trait defined here, with 4 generic parameters: `I`, `C`, `T`, `V` [INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/biofile-1.10.3/src/iter.rs:18:11 [INFO] [stderr] | [INFO] [stderr] 18 | pub trait ToChromIntervalValueIter [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^ - - - - [INFO] [stderr] help: add missing generic arguments [INFO] [stderr] | [INFO] [stderr] 52 | >::get_chrom_to_interval_to_val( [INFO] [stderr] | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] [INFO] [stderr] error[E0107]: missing generics for trait `ToChromIntervalValueIter` [INFO] [stderr] --> src/linear_track_mixture.rs:88:22 [INFO] [stderr] | [INFO] [stderr] 88 | ::get_chrom_to_interval_to_val( [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^ expected 4 generic arguments [INFO] [stderr] | [INFO] [stderr] note: trait defined here, with 4 generic parameters: `I`, `C`, `T`, `V` [INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/biofile-1.10.3/src/iter.rs:18:11 [INFO] [stderr] | [INFO] [stderr] 18 | pub trait ToChromIntervalValueIter [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^ - - - - [INFO] [stderr] help: add missing generic arguments [INFO] [stderr] | [INFO] [stderr] 88 | >::get_chrom_to_interval_to_val( [INFO] [stderr] | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] [INFO] [stderr] error[E0107]: missing generics for trait `ToChromIntervalValueIter` [INFO] [stderr] --> src/track_correlation.rs:56:18 [INFO] [stderr] | [INFO] [stderr] 56 | ::get_chrom_to_interval_to_val(bed, exclude) [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^ expected 4 generic arguments [INFO] [stderr] | [INFO] [stderr] note: trait defined here, with 4 generic parameters: `I`, `C`, `T`, `V` [INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/biofile-1.10.3/src/iter.rs:18:11 [INFO] [stderr] | [INFO] [stderr] 18 | pub trait ToChromIntervalValueIter [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^ - - - - [INFO] [stderr] help: add missing generic arguments [INFO] [stderr] | [INFO] [stderr] 56 | >::get_chrom_to_interval_to_val(bed, exclude) [INFO] [stderr] | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] [INFO] [stderr] error[E0107]: missing generics for trait `ToChromIntervalValueIter` [INFO] [stderr] --> src/track_correlation.rs:59:18 [INFO] [stderr] | [INFO] [stderr] 59 | ::get_chrom_to_interval_to_val( [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^ expected 4 generic arguments [INFO] [stderr] | [INFO] [stderr] note: trait defined here, with 4 generic parameters: `I`, `C`, `T`, `V` [INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/biofile-1.10.3/src/iter.rs:18:11 [INFO] [stderr] | [INFO] [stderr] 18 | pub trait ToChromIntervalValueIter [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^ - - - - [INFO] [stderr] help: add missing generic arguments [INFO] [stderr] | [INFO] [stderr] 59 | >::get_chrom_to_interval_to_val( [INFO] [stderr] | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] [INFO] [stderr] error[E0107]: missing generics for trait `ToChromIntervalValueIter` [INFO] [stderr] --> src/track_histogram.rs:33:20 [INFO] [stderr] | [INFO] [stderr] 33 | match ::get_chrom_to_interval_to_val( [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^ expected 4 generic arguments [INFO] [stderr] | [INFO] [stderr] note: trait defined here, with 4 generic parameters: `I`, `C`, `T`, `V` [INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/biofile-1.10.3/src/iter.rs:18:11 [INFO] [stderr] | [INFO] [stderr] 18 | pub trait ToChromIntervalValueIter [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^ - - - - [INFO] [stderr] help: add missing generic arguments [INFO] [stderr] | [INFO] [stderr] 33 | match >::get_chrom_to_interval_to_val( [INFO] [stderr] | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] [INFO] [stderr] error[E0107]: missing generics for trait `ToChromIntervalValueIter` [INFO] [stderr] --> src/track_zipper.rs:40:22 [INFO] [stderr] | [INFO] [stderr] 40 | ::get_chrom_to_interval_to_val( [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^ expected 4 generic arguments [INFO] [stderr] | [INFO] [stderr] note: trait defined here, with 4 generic parameters: `I`, `C`, `T`, `V` [INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/biofile-1.10.3/src/iter.rs:18:11 [INFO] [stderr] | [INFO] [stderr] 18 | pub trait ToChromIntervalValueIter [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^ - - - - [INFO] [stderr] help: add missing generic arguments [INFO] [stderr] | [INFO] [stderr] 40 | >::get_chrom_to_interval_to_val( [INFO] [stderr] | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] [INFO] [stderr] error: aborting due to 6 previous errors [INFO] [stderr] [INFO] [stderr] For more information about this error, try `rustc --explain E0107`. [INFO] [stderr] Original diagnostics will follow. [INFO] [stderr] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/linear_track_mixture.rs:52:13 [INFO] [stdout] | [INFO] [stdout] 52 | ToChromIntervalValueIter::get_chrom_to_interval_to_val( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^ help: use `dyn`: `` [INFO] [stdout] | [INFO] [stdout] = note: `--force-warn bare-trait-objects` implied by `--force-warn rust-2021-compatibility` [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2018) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/linear_track_mixture.rs:88:17 [INFO] [stdout] | [INFO] [stdout] 88 | ToChromIntervalValueIter::get_chrom_to_interval_to_val( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^ help: use `dyn`: `` [INFO] [stdout] | [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2018) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/track_correlation.rs:56:13 [INFO] [stdout] | [INFO] [stdout] 56 | ToChromIntervalValueIter::get_chrom_to_interval_to_val(bed, exclude) [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^ help: use `dyn`: `` [INFO] [stdout] | [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2018) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/track_correlation.rs:59:13 [INFO] [stdout] | [INFO] [stdout] 59 | ToChromIntervalValueIter::get_chrom_to_interval_to_val( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^ help: use `dyn`: `` [INFO] [stdout] | [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2018) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/track_histogram.rs:33:15 [INFO] [stdout] | [INFO] [stdout] 33 | match ToChromIntervalValueIter::get_chrom_to_interval_to_val( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^ help: use `dyn`: `` [INFO] [stdout] | [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2018) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/track_zipper.rs:40:17 [INFO] [stdout] | [INFO] [stdout] 40 | ToChromIntervalValueIter::get_chrom_to_interval_to_val( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^ help: use `dyn`: `` [INFO] [stdout] | [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2018) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/linear_track_mixture.rs:52:13 [INFO] [stdout] | [INFO] [stdout] 52 | ToChromIntervalValueIter::get_chrom_to_interval_to_val( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^ help: use `dyn`: `` [INFO] [stdout] | [INFO] [stdout] = note: `--force-warn bare-trait-objects` implied by `--force-warn rust-2021-compatibility` [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2018) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/linear_track_mixture.rs:88:17 [INFO] [stdout] | [INFO] [stdout] 88 | ToChromIntervalValueIter::get_chrom_to_interval_to_val( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^ help: use `dyn`: `` [INFO] [stdout] | [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2018) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/linear_track_mixture.rs:267:17 [INFO] [stdout] | [INFO] [stdout] 267 | ToChromIntervalValueIter::get_chrom_to_interval_to_val( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^ help: use `dyn`: `` [INFO] [stdout] | [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2018) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/linear_track_mixture.rs:304:17 [INFO] [stdout] | [INFO] [stdout] 304 | ToChromIntervalValueIter::get_chrom_to_interval_to_val( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^ help: use `dyn`: `` [INFO] [stdout] | [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2018) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/linear_track_mixture.rs:349:17 [INFO] [stdout] | [INFO] [stdout] 349 | ToChromIntervalValueIter::get_chrom_to_interval_to_val( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^ help: use `dyn`: `` [INFO] [stdout] | [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2018) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/track_correlation.rs:56:13 [INFO] [stdout] | [INFO] [stdout] 56 | ToChromIntervalValueIter::get_chrom_to_interval_to_val(bed, exclude) [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^ help: use `dyn`: `` [INFO] [stdout] | [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2018) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/track_correlation.rs:59:13 [INFO] [stdout] | [INFO] [stdout] 59 | ToChromIntervalValueIter::get_chrom_to_interval_to_val( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^ help: use `dyn`: `` [INFO] [stdout] | [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2018) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/track_histogram.rs:33:15 [INFO] [stdout] | [INFO] [stdout] 33 | match ToChromIntervalValueIter::get_chrom_to_interval_to_val( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^ help: use `dyn`: `` [INFO] [stdout] | [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2018) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/track_zipper.rs:40:17 [INFO] [stdout] | [INFO] [stdout] 40 | ToChromIntervalValueIter::get_chrom_to_interval_to_val( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^ help: use `dyn`: `` [INFO] [stdout] | [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2018) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 6 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Migrating src/bin/refine_bed.rs from 2018 edition to 2021 [INFO] [stderr] Migrating src/bin/compute_track_correlation.rs from 2018 edition to 2021 [INFO] [stderr] Migrating src/bin/zip_refined_beds.rs from 2018 edition to 2021 [INFO] [stderr] Migrating src/bin/linearly_mix_tracks.rs from 2018 edition to 2021 [INFO] [stderr] Migrating src/bin/generate_track_histogram.rs from 2018 edition to 2021 [INFO] [stderr] Migrating tests/test_bed_refinery.rs from 2018 edition to 2021 [INFO] [stderr] Migrating tests/test_track_correlation.rs from 2018 edition to 2021 [INFO] [stdout] warning: 9 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 18.09s [INFO] [stderr] Running `cargo check` to verify 2021 [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Checking biostats v0.6.4 (/tmp/fixit) [INFO] [stdout] error[E0783]: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/linear_track_mixture.rs:52:13 [INFO] [stdout] | [INFO] [stdout] 52 | ToChromIntervalValueIter::get_chrom_to_interval_to_val( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^ help: : `use `dyn`` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0783]: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/linear_track_mixture.rs:88:17 [INFO] [stdout] | [INFO] [stdout] 88 | ToChromIntervalValueIter::get_chrom_to_interval_to_val( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^ help: : `use `dyn`` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0783]: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/linear_track_mixture.rs:52:13 [INFO] [stdout] | [INFO] [stdout] 52 | ToChromIntervalValueIter::get_chrom_to_interval_to_val( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^ help: : `use `dyn`` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0783]: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/linear_track_mixture.rs:88:17 [INFO] [stdout] | [INFO] [stdout] 88 | ToChromIntervalValueIter::get_chrom_to_interval_to_val( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^ help: : `use `dyn`` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0783]: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/linear_track_mixture.rs:267:17 [INFO] [stdout] | [INFO] [stdout] 267 | ToChromIntervalValueIter::get_chrom_to_interval_to_val( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^ help: : `use `dyn`` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0783]: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/track_correlation.rs:56:13 [INFO] [stdout] | [INFO] [stdout] 56 | ToChromIntervalValueIter::get_chrom_to_interval_to_val(bed, exclude) [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^ help: : `use `dyn`` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0783]: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/track_correlation.rs:59:13 [INFO] [stdout] | [INFO] [stdout] 59 | ToChromIntervalValueIter::get_chrom_to_interval_to_val( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^ help: : `use `dyn`` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0783]: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/track_histogram.rs:33:15 [INFO] [stdout] | [INFO] [stdout] 33 | match ToChromIntervalValueIter::get_chrom_to_interval_to_val( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^ help: : `use `dyn`` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0783]: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/track_zipper.rs:40:17 [INFO] [stdout] | [INFO] [stdout] 40 | ToChromIntervalValueIter::get_chrom_to_interval_to_val( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^ help: : `use `dyn`` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to 6 previous errors [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] For more information about this error, try `rustc --explain E0783`. [INFO] [stdout] [INFO] [stdout] error[E0783]: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/linear_track_mixture.rs:304:17 [INFO] [stdout] | [INFO] [stdout] 304 | ToChromIntervalValueIter::get_chrom_to_interval_to_val( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^ help: : `use `dyn`` [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] error: could not compile `biostats` due to 7 previous errors [INFO] [stdout] error[E0783]: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/linear_track_mixture.rs:349:17 [INFO] [stdout] | [INFO] [stdout] 349 | ToChromIntervalValueIter::get_chrom_to_interval_to_val( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^ help: : `use `dyn`` [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stdout] error[E0783]: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/track_correlation.rs:56:13 [INFO] [stdout] | [INFO] [stdout] 56 | ToChromIntervalValueIter::get_chrom_to_interval_to_val(bed, exclude) [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^ help: : `use `dyn`` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0783]: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/track_correlation.rs:59:13 [INFO] [stdout] | [INFO] [stdout] 59 | ToChromIntervalValueIter::get_chrom_to_interval_to_val( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^ help: : `use `dyn`` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0783]: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/track_histogram.rs:33:15 [INFO] [stdout] | [INFO] [stdout] 33 | match ToChromIntervalValueIter::get_chrom_to_interval_to_val( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^ help: : `use `dyn`` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0783]: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/track_zipper.rs:40:17 [INFO] [stdout] | [INFO] [stdout] 40 | ToChromIntervalValueIter::get_chrom_to_interval_to_val( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^ help: : `use `dyn`` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to 9 previous errors [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] For more information about this error, try `rustc --explain E0783`. [INFO] [stdout] [INFO] [stderr] error: build failed [INFO] [stderr] error: failed to check after updating to 2021 [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `cargo check --frozen --all --all-targets --message-format=json` (exit status: 101) [INFO] running `Command { std: "docker" "inspect" "720a234282df1e6e33c91dbeba77e028f6893332048ad93aa6f293ca97917508", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "720a234282df1e6e33c91dbeba77e028f6893332048ad93aa6f293ca97917508", kill_on_drop: false }` [INFO] [stdout] 720a234282df1e6e33c91dbeba77e028f6893332048ad93aa6f293ca97917508