[INFO] fetching crate bio 0.37.0...
[INFO] checking bio-0.37.0 against try#a7a572ce3edd6d476191fbfe92c9c1986e009b34 for pr-87190-3
[INFO] extracting crate bio 0.37.0 into /workspace/builds/worker-84/source
[INFO] validating manifest of crates.io crate bio 0.37.0 on toolchain a7a572ce3edd6d476191fbfe92c9c1986e009b34
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a7a572ce3edd6d476191fbfe92c9c1986e009b34" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate bio 0.37.0
[INFO] finished tweaking crates.io crate bio 0.37.0
[INFO] tweaked toml for crates.io crate bio 0.37.0 written to /workspace/builds/worker-84/source/Cargo.toml
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a7a572ce3edd6d476191fbfe92c9c1986e009b34" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }`
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a7a572ce3edd6d476191fbfe92c9c1986e009b34" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded simba v0.4.0
[INFO] [stderr]   Downloaded statrs v0.14.0
[INFO] [stderr]   Downloaded nalgebra v0.26.2
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-84/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-84/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+a7a572ce3edd6d476191fbfe92c9c1986e009b34" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] abd0f578eb1273348e7275223a676b7ca23c9cb65f8af2062e8203c0200d09dd
[INFO] running `Command { std: "docker" "start" "-a" "abd0f578eb1273348e7275223a676b7ca23c9cb65f8af2062e8203c0200d09dd", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "abd0f578eb1273348e7275223a676b7ca23c9cb65f8af2062e8203c0200d09dd", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "abd0f578eb1273348e7275223a676b7ca23c9cb65f8af2062e8203c0200d09dd", kill_on_drop: false }`
[INFO] [stdout] abd0f578eb1273348e7275223a676b7ca23c9cb65f8af2062e8203c0200d09dd
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-84/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-84/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+a7a572ce3edd6d476191fbfe92c9c1986e009b34" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 41e2d0aec014f208a45c119dd7ce5456905a00c4c0bde40c35652dd82ad4b0d3
[INFO] running `Command { std: "docker" "start" "-a" "41e2d0aec014f208a45c119dd7ce5456905a00c4c0bde40c35652dd82ad4b0d3", kill_on_drop: false }`
[INFO] [stderr] Copying to /tmp/fixit
[INFO] [stderr] Running `cargo fix --edition`
[INFO] [stderr] note: Switching to Edition 2021 will enable the use of the version 2 feature resolver in Cargo.
[INFO] [stderr] This may cause some dependencies to be built with fewer features enabled than previously.
[INFO] [stderr] More information about the resolver changes may be found at https://doc.rust-lang.org/nightly/edition-guide/rust-2021/default-cargo-resolver.html
[INFO] [stderr] When building the following dependencies, the given features will no longer be used:
[INFO] [stderr] 
[INFO] [stderr]   libc v0.2.100: default, std
[INFO] [stderr] 
[INFO] [stderr]    Compiling autocfg v1.0.1
[INFO] [stderr]    Compiling proc-macro2 v1.0.28
[INFO] [stderr]    Compiling unicode-xid v0.2.2
[INFO] [stderr]    Compiling libc v0.2.100
[INFO] [stderr]    Compiling syn v1.0.75
[INFO] [stderr]    Compiling libm v0.2.1
[INFO] [stderr]    Compiling serde_derive v1.0.128
[INFO] [stderr]    Compiling memchr v2.4.1
[INFO] [stderr]    Compiling serde v1.0.128
[INFO] [stderr]    Compiling getrandom v0.1.16
[INFO] [stderr]     Checking rawpointer v0.2.1
[INFO] [stderr]    Compiling typenum v1.13.0
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]     Checking regex-syntax v0.6.25
[INFO] [stderr]    Compiling ryu v1.0.5
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]    Compiling paste v1.0.5
[INFO] [stderr]    Compiling unicode-segmentation v1.8.0
[INFO] [stderr]     Checking regex-automata v0.1.10
[INFO] [stderr]    Compiling anyhow v1.0.43
[INFO] [stderr]     Checking byteorder v1.4.3
[INFO] [stderr]     Checking hashbrown v0.11.2
[INFO] [stderr]     Checking bit-vec v0.6.3
[INFO] [stderr]    Compiling ndarray v0.14.0
[INFO] [stderr]     Checking fixedbitset v0.2.0
[INFO] [stderr]     Checking either v1.6.1
[INFO] [stderr]     Checking quick-error v1.2.3
[INFO] [stderr]     Checking array-macro v1.0.5
[INFO] [stderr]    Compiling bio v0.37.0 (/tmp/fixit)
[INFO] [stderr]     Checking itoa v0.4.8
[INFO] [stderr]     Checking quick-error v2.0.1
[INFO] [stderr]     Checking strum v0.20.0
[INFO] [stderr]     Checking triple_accel v0.3.4
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking bytecount v0.6.2
[INFO] [stderr]    Migrating build.rs from 2018 edition to 2021
[INFO] [stderr]     Checking matrixmultiply v0.3.1
[INFO] [stderr]     Checking matrixmultiply v0.2.4
[INFO] [stderr]     Checking itertools v0.9.0
[INFO] [stderr]     Checking bit-set v0.5.2
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling num-traits v0.2.14
[INFO] [stderr]    Compiling num-integer v0.1.44
[INFO] [stderr]    Compiling num-rational v0.3.2
[INFO] [stderr]    Compiling indexmap v1.7.0
[INFO] [stderr]     Checking fxhash v0.2.1
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling heck v0.3.3
[INFO] [stderr]     Checking aho-corasick v0.7.18
[INFO] [stderr]     Checking csv-core v0.1.10
[INFO] [stderr]    Compiling quote v1.0.9
[INFO] [stderr]     Checking getrandom v0.2.3
[INFO] [stderr]     Checking wait-timeout v0.2.0
[INFO] [stderr]     Checking petgraph v0.5.1
[INFO] [stderr]     Checking rand_core v0.6.3
[INFO] [stderr]     Checking rand_core v0.5.1
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]     Checking rand_xorshift v0.3.0
[INFO] [stderr]     Checking rand_chacha v0.2.2
[INFO] [stderr]     Checking rand v0.7.3
[INFO] [stderr]     Checking rand v0.8.4
[INFO] [stderr]     Checking num-complex v0.3.1
[INFO] [stderr]     Checking approx v0.4.0
[INFO] [stderr]     Checking approx v0.3.2
[INFO] [stderr]     Checking ordered-float v1.1.1
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]     Checking simba v0.4.0
[INFO] [stderr]     Checking regex v1.5.4
[INFO] [stderr]     Checking rand_distr v0.4.1
[INFO] [stderr]     Checking tempfile v3.2.0
[INFO] [stderr]     Checking rusty-fork v0.3.0
[INFO] [stderr]     Checking proptest v1.0.0
[INFO] [stderr]    Compiling thiserror-impl v1.0.26
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling enum-map-derive v0.4.6
[INFO] [stderr]    Compiling strum_macros v0.20.1
[INFO] [stderr]    Compiling getset v0.0.9
[INFO] [stderr]     Checking enum-map v0.6.4
[INFO] [stderr]     Checking thiserror v1.0.26
[INFO] [stderr]     Checking bio-types v0.12.0
[INFO] [stderr]     Checking nalgebra v0.26.2
[INFO] [stderr]     Checking bstr v0.2.16
[INFO] [stderr]     Checking multimap v0.8.3
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]     Checking csv v1.1.6
[INFO] [stderr]     Checking statrs v0.14.0
[INFO] [stderr]    Migrating src/lib.rs from 2018 edition to 2021
[INFO] [stderr]    Migrating benches/pairhmm.rs from 2018 edition to 2021
[INFO] [stderr]    Migrating benches/suffix_array.rs from 2018 edition to 2021
[INFO] [stderr]    Migrating benches/orf.rs from 2018 edition to 2021
[INFO] [stderr]    Migrating tests/mod.rs from 2018 edition to 2021
[INFO] [stderr]    Migrating benches/fmindex.rs from 2018 edition to 2021
[INFO] [stderr]    Migrating benches/pairwise.rs from 2018 edition to 2021
[INFO] [stderr]    Migrating benches/distance.rs from 2018 edition to 2021
[INFO] [stderr]    Migrating benches/pattern_matching.rs from 2018 edition to 2021
[INFO] [stderr]    Migrating benches/approximate_matching.rs from 2018 edition to 2021
[INFO] [stderr]    Migrating benches/fasta_buffer_size.rs from 2018 edition to 2021
[INFO] [stderr]    Migrating benches/interval_tree.rs from 2018 edition to 2021
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 45.56s
[INFO] [stderr] Running `cargo check` to verify 2021
[INFO] [stderr]    Compiling bio v0.37.0 (/tmp/fixit)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 7.76s
[INFO] running `Command { std: "docker" "inspect" "41e2d0aec014f208a45c119dd7ce5456905a00c4c0bde40c35652dd82ad4b0d3", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "41e2d0aec014f208a45c119dd7ce5456905a00c4c0bde40c35652dd82ad4b0d3", kill_on_drop: false }`
[INFO] [stdout] 41e2d0aec014f208a45c119dd7ce5456905a00c4c0bde40c35652dd82ad4b0d3